Chy10G177690 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G177690
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Rad60-SLD domain-containing protein
Location	chrH10: 12384095 .. 12387356 (+)
RNA-Seq Expression	Chy10G177690
Synteny	Chy10G177690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGTTCCCTCTCAAGTCTCTACCGTAGCGCCAACTCTATGAAAACCAACTATTTCGAATCAAATCGGAAAAAGGAGATTCTCCTAAACCCCCATCTTCCATCTAAATTAAAATATCTATTGGGTTCTTCTTCTTCGGCTTCAGAACCGAAGTACTACACGTGTTCTTCGTGTCCTCATAGTTTTAGTAATGGATATTGGACGCGATGCACCAAATGTTCCGAAATTATGACTACTGAAGCATCGTATGTTCACTATGATCGTGGAGACGGTTATGTGGTTGGGGCTCGGGGAATGGTTACGTATATGGTTATGGATGATCTAACTGTTAAGCCCATTACATCTTCTATGTCTACTATTTCGGTGTTGACTCAGTTGAATGTGGAGGATATTCGCCATATTGAGGAGAAAGTTATTCCTTTCCATCTGATTCACTACACTAGAAATGTTTTGATTATCTTCTCTTGAGAAACACAAATTTTAACCTGACTAACGTTCTTGCTGTTAGTTTTGATTCATAACTCACAACATATATACCGTTTGTTTGAGTTGTTTTCTGGGGTTTTGGTCTTAAAGGGCGTGGAGTTGCTGAGGGCTTCTCTTGATTCGAACAAGGTGCTCACGGACATGTTTTATTACAAGCTCGACCTCTCAACAAAGCCTGGTATAGCTGGTATGTTTTGATATTTTATTTAGAAAGTGTCATTCTTCAAACTTTTTTTTGAAGAAAAATTGTTGAATATTCATCAACTCTTTTTACTCAATTGTCTCCACAATATCATTCTTCATTGCTATACTAAGGATTAACTATCAAAATAAGGCCATTTTAAAAAATATTTGCAGATGTGATGCTTTCTCAAACTATTTGTAAAAATACTGTGAACTTTTTTGTCTCTATTACTTTCACCATCTTTGAAAGACTGAATTTAAAAGAATTCAGAACTCCATTTTTGTAACAGACTGAACTCTGTGAGCCCGTTTGTCTCTTAGATTTGAGAGGAATGGATTGAGCTATTTATGCACACTCAGAGCCCAAATTTGGATAACCTTAGGATTAGGTTCCTAATCCTTTCTCTTCCTGTCAGTAGGCCGATAATCCTTCTCCCTTACTCTTAGTTACTCACTCCGATGATAATATTTATCCCTCTCTTCCATCACTGTTTCTTACTCTTTCGATAACCCTTCTCCAGTCCTACTCCGTCTTTCCCATCCCTCTTTCCCTACTTCTCTTCTCCGAATCCGTTCTCTCATTCCCTTATCCGAATCCGTCACACGTACGTCCCGAATGGGTCTTGGATTCCCTCCTTCAAACCTTCCTTGGTTTCGTTGAATGTTTGGTTTTTCAAAGCCTGTTTCTCTCTTTAATTCCACGGGCACGGGACTCTCTTCTGTTCATTTCTGCTCCCGCTTTTCCTTCCTCTCACACTTGTCAATTCTTACTTTGAGTTTTCATTTTTAGGCGCATTCCCATGAAGAAGTTGAACCCTTGTTCGATTACAGCCGCGTTCAGCCTCCCTCCGTTGTCTGTCTCGATGATAAAAGTTCTCCATGATATTTGAATTTCAAGGAAGTTAGAACTTTCTATTTCAGTGTTTAATGTGATTACAGTTCTTTTTTAGCAAGAAATTTCGACATTGGGTTTCCTTATGCATACGGTCTTTCAAACTGATGGTTATTTTGTGATTTTTTTTCCTCTTATTTGGAGTAACAACATTAGACGAGGATTCAGACGCAGACAAATCTCCGGCTCCTTTTGCAAAGCGAGCAAAGATTGTGAATCGGGCGGTATATTATTCCCTTCATGTAGTGAAATAGTGGAGTTTCTGTTTACCCAAGATTACTGTTCGTTGAAACAGTCAGTAAAGCTTGTTTTTTTTGGTGACCATTTCCTTTTAATCAATATTTAGGCTACGAGTTCGGTGCATGGTAACCCAAAGGAAAAACAAGCGGAAATTGAAGATAAAGAGGAAGAATGGCTTTCTCCTCCACCGAAAGTGTTAGTTGATGCAAAGAATAGGCGTGGGAAAGATTCCACATTGAAGAAGTTAAGGTATTCCAATTTAGTGTTATGCATCTATTCCTTGATTAATCAATTAATATAAAATGGAACTATGATTTGTTATGTGCATAAGCTGCCATGGCCTTTGTCTCATGCCATTTTTCCTTTGCATGTCATATTATAATATGTACTGATAGGTTAAAGAAGCAAGAGTCGGCCTCTGTAAGAGCAAAAATTGTAAGAATTGTTGTTTCTGTACGCGACAGTGACAAGGAAGACCTCAGAAAGTGTCGCATGCTTGTGGTATATTCTCGTCCATCTCTGCGTGTTGTTGACAACTCGCAATTGGCATTCTTTAATTGCAACCATCTTGTTCTGTGAATATATCACATGTCATATGTTTGCGATCACTGTTTTCTGTACACTTGGTAAGCATATGTTTAGATCTAGGGAAACAAATGAATATGATGAAGTTGAATGGTGAGGAAAGGAAGTAAGGATAGACAATATTGGTAGCAAATCTTGAAAACATTGATTAATTGGAATGGAGGTTGTGGAGAACTGTAATTCCTTCAATTTCCTAAGTAGTCACTTTATTATCTTGAAAAGCGTTTGGTTTCCTGGGTTACTTTCTGGTTGTCAATAGTGATTTGCCACATATACCCTTTAATTTGATTTTTCTTGTTCTGCCCTTCCACGTTATGATTGCCTTAAATTTTCTATTTTTATGCGGTGATCACTAGATTTGAAGTTGAACTTAGATTTTTACTTTTGTTACATTACTGTTCTCGTACAGTTTTTGCAATTATGAATGTGGGTTGTCTTAGAACGACTCTTTTCTATGAATCATATCCATGCTCAGGCTATAGTGCAAGTACTGTAGGTCTCCATACTGGGAGATGTTATTTGATTGAATTATTTAGGAGTAACTCCCTCATCTTGTACCTTGGTTTGTTGTTAGGTATTACTTTTTTCTTATCTCCGTATTGTTTATCTTTATATAACCCTACTACATAGGTTCTGTATCTAACTTTATGATGTGAGTGTGACACTTGTTCAATGCATGATTTTGGAATTTTGTTGTTTGTATAGGATTACAAGTTTGAGCAACTTTTTGAAATATATGCAATCAAACTTAAAGTCGATCTCAAGAGTCTGGTCTTTGTTTTTGATGGGGATAAAATTGGCCCAGATGATACCCCAGGTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTTCGCATCAAGTCGAGTTGA

mRNA sequence

ATGATTGGTTCCCTCTCAAGTCTCTACCGTAGCGCCAACTCTATGAAAACCAACTATTTCGAATCAAATCGGAAAAAGGAGATTCTCCTAAACCCCCATCTTCCATCTAAATTAAAATATCTATTGGGTTCTTCTTCTTCGGCTTCAGAACCGAAGTACTACACGTGTTCTTCGTGTCCTCATAGTTTTAGTAATGGATATTGGACGCGATGCACCAAATGTTCCGAAATTATGACTACTGAAGCATCGTATGTTCACTATGATCGTGGAGACGGTTATGTGGTTGGGGCTCGGGGAATGGTTACGTATATGGTTATGGATGATCTAACTGTTAAGCCCATTACATCTTCTATGTCTACTATTTCGGTGTTGACTCAGTTGAATGTGGAGGATATTCGCCATATTGAGGAGAAAGGCGTGGAGTTGCTGAGGGCTTCTCTTGATTCGAACAAGGTGCTCACGGACATGTTTTATTACAAGCTCGACCTCTCAACAAAGCCTGGTATAGCTGTTACTCACTCCGATGATAATATTTATCCCTCTCTTCCATCACTGTTTCTTACTCTTTCGATAACCCTTCTCCAGTCCTACTCCGTCTTTCCCATCCCTCTTTCCCTACTTCTCTTCTCCGAATCCGTTCTCTCATTCCCTTATCCGAATCCGTCACACGCGCATTCCCATGAAGAAGTTGAACCCTTGTTCGATTACAGCCGCGTTCAGCCTCCCTCCGTTGTCTGTCTCGATGATAAAATAACAACATTAGACGAGGATTCAGACGCAGACAAATCTCCGGCTCCTTTTGCAAAGCGAGCAAAGATTGTGAATCGGGCGGCTACGAGTTCGGTGCATGGTAACCCAAAGGAAAAACAAGCGGAAATTGAAGATAAAGAGGAAGAATGGCTTTCTCCTCCACCGAAAGTGTTAGTTGATGCAAAGAATAGGCGTGGGAAAGATTCCACATTGAAGAAGTTAAGGTTAAAGAAGCAAGAGTCGGCCTCTGTAAGAGCAAAAATTGTAAGAATTGTTGTTTCTGTACGCGACAGTGACAAGGAAGACCTCAGAAAGTGTCGCATGCTTGTGGATTACAAGTTTGAGCAACTTTTTGAAATATATGCAATCAAACTTAAAGTCGATCTCAAGAGTCTGGTCTTTGTTTTTGATGGGGATAAAATTGGCCCAGATGATACCCCAGGTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTTCGCATCAAGTCGAGTTGA

Coding sequence (CDS)

ATGATTGGTTCCCTCTCAAGTCTCTACCGTAGCGCCAACTCTATGAAAACCAACTATTTCGAATCAAATCGGAAAAAGGAGATTCTCCTAAACCCCCATCTTCCATCTAAATTAAAATATCTATTGGGTTCTTCTTCTTCGGCTTCAGAACCGAAGTACTACACGTGTTCTTCGTGTCCTCATAGTTTTAGTAATGGATATTGGACGCGATGCACCAAATGTTCCGAAATTATGACTACTGAAGCATCGTATGTTCACTATGATCGTGGAGACGGTTATGTGGTTGGGGCTCGGGGAATGGTTACGTATATGGTTATGGATGATCTAACTGTTAAGCCCATTACATCTTCTATGTCTACTATTTCGGTGTTGACTCAGTTGAATGTGGAGGATATTCGCCATATTGAGGAGAAAGGCGTGGAGTTGCTGAGGGCTTCTCTTGATTCGAACAAGGTGCTCACGGACATGTTTTATTACAAGCTCGACCTCTCAACAAAGCCTGGTATAGCTGTTACTCACTCCGATGATAATATTTATCCCTCTCTTCCATCACTGTTTCTTACTCTTTCGATAACCCTTCTCCAGTCCTACTCCGTCTTTCCCATCCCTCTTTCCCTACTTCTCTTCTCCGAATCCGTTCTCTCATTCCCTTATCCGAATCCGTCACACGCGCATTCCCATGAAGAAGTTGAACCCTTGTTCGATTACAGCCGCGTTCAGCCTCCCTCCGTTGTCTGTCTCGATGATAAAATAACAACATTAGACGAGGATTCAGACGCAGACAAATCTCCGGCTCCTTTTGCAAAGCGAGCAAAGATTGTGAATCGGGCGGCTACGAGTTCGGTGCATGGTAACCCAAAGGAAAAACAAGCGGAAATTGAAGATAAAGAGGAAGAATGGCTTTCTCCTCCACCGAAAGTGTTAGTTGATGCAAAGAATAGGCGTGGGAAAGATTCCACATTGAAGAAGTTAAGGTTAAAGAAGCAAGAGTCGGCCTCTGTAAGAGCAAAAATTGTAAGAATTGTTGTTTCTGTACGCGACAGTGACAAGGAAGACCTCAGAAAGTGTCGCATGCTTGTGGATTACAAGTTTGAGCAACTTTTTGAAATATATGCAATCAAACTTAAAGTCGATCTCAAGAGTCTGGTCTTTGTTTTTGATGGGGATAAAATTGGCCCAGATGATACCCCAGGTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTTCGCATCAAGTCGAGTTGA

Protein sequence

MIGSLSSLYRSANSMKTNYFESNRKKEILLNPHLPSKLKYLLGSSSSASEPKYYTCSSCPHSFSNGYWTRCTKCSEIMTTEASYVHYDRGDGYVVGARGMVTYMVMDDLTVKPITSSMSTISVLTQLNVEDIRHIEEKGVELLRASLDSNKVLTDMFYYKLDLSTKPGIAVTHSDDNIYPSLPSLFLTLSITLLQSYSVFPIPLSLLLFSESVLSFPYPNPSHAHSHEEVEPLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVHGNPKEKQAEIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASVRAKIVRIVVSVRDSDKEDLRKCRMLVDYKFEQLFEIYAIKLKVDLKSLVFVFDGDKIGPDDTPGGLGMEDDDMIEVRIKSS*

Homology

[Close]

BLAST of Chy10G177690 vs. ExPASy TrEMBL
Match: A0A0A0KQ74 (Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G180310 PE=4 SV=1)

HSP 1 Score: 644.0 bits (1660), Expect = 4.2e-181
Identity = 373/517 (72.15%), Postives = 389/517 (75.24%), Query Frame = 0


Query: 1   MIGSLSSLYRSANSMKTNYFESNRKKEILLNPHLPSKLKYLLGSSSSASEPKYYTCSSCP 60
           MIGSLSSLYRSANSMKTNYFESNRKKE LLNPHLPSKLKYLLGSSSSASEPKY+TCSSCP
Sbjct: 112 MIGSLSSLYRSANSMKTNYFESNRKKESLLNPHLPSKLKYLLGSSSSASEPKYFTCSSCP 171

Query: 61  HSFSNGYWTRCTKCSEIMTTEASYVHYDRGDGYVVGARGMVTYMVMDDLTVKPITSSMST 120
            SFSNGY+ RCTKCSEIMTTEA YVHYD GDGYVVGA GMVTYMVMDDLTVKPITSSMST
Sbjct: 172 DSFSNGYFARCTKCSEIMTTEALYVHYDLGDGYVVGAGGMVTYMVMDDLTVKPITSSMST 231

Query: 121 ISVLTQLNVEDIRHIEEK---------GVELLRASLDSNKVLTDMFYYKLDLSTKPGIA- 180
           IS+LTQLNVEDIRHIEEK         GVELLRASLDSNKVLTDMFYYKLDLSTKPGIA 
Sbjct: 232 ISMLTQLNVEDIRHIEEKVIPFHLSNEGVELLRASLDSNKVLTDMFYYKLDLSTKPGIAE 291

Query: 181 ------------------------------VTHSDDNIYPSLPSLFLTLSITLLQSYSVF 240
                                         VTHS DN+YPSLPSLFLTLSITLLQSYSVF
Sbjct: 292 EWIELFMHTQSPNLDNLRISRPIILLPLLFVTHSFDNVYPSLPSLFLTLSITLLQSYSVF 351

Query: 241 PIPLSLL------LFSESVLSFPY---PNPS------------HAHSHEEVEPLFDYSRV 300
           PIP SL        FS S++   +   PN S            +A   EE EPLFDYSRV
Sbjct: 352 PIPFSLFPYSSPNPFSHSLIRIRHTYVPNGSWIPSFKLSLVSLNADFAEEFEPLFDYSRV 411

Query: 301 QPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVHGNPKEKQAEIEDKEEE 360
           +PPSVV LDD+ITTLDEDSDADKSPAPFAKRAKIVN AATSSV+GNPKEKQ EIE KEEE
Sbjct: 412 KPPSVVYLDDRITTLDEDSDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQVEIEHKEEE 471

Query: 361 WLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASV------------------------- 416
            LSPPPKVLVDAKNRRGKDSTLKKLRLKKQESA V                         
Sbjct: 472 RLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKVDVGNTSKD 531

[Close]

BLAST of Chy10G177690 vs. ExPASy TrEMBL
Match: A0A0A0KWH7 (Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.3e-67
Identity = 151/230 (65.65%), Postives = 168/230 (73.04%), Query Frame = 0


Query: 224 AHSHEEVEPLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVH 283
           A S EE EPLFDYSRVQPPSVVCLD      DEDSDADKSPAPF KRAKIVN AATSSV+
Sbjct: 2   ADSAEEFEPLFDYSRVQPPSVVCLD------DEDSDADKSPAPFTKRAKIVNPAATSSVN 61

Query: 284 GNPKEKQAEIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASV--------- 343
           GNPKEKQ EIEDKEE+WL PPPKVLVDA+NR  +DSTLK+LRLKKQE ASV         
Sbjct: 62  GNPKEKQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLR 121

Query: 344 ----RAKI-------------------------VRIVVSVRDSDKEDLRKCRMLVDYKFE 403
                AK+                          +IV+SVRDSDKE+L++ R+ VD KFE
Sbjct: 122 EVEESAKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKEELKQYRLFVDDKFE 181

Query: 404 QLFEIYAIKLKVDLKSLVFVFDGDKIGPDDTPGGLGMEDDDMIEVRIKSS 416
           +LF++YA KLK+D KSLVFVFDGDK+GPDDTPGGLGMEDDDMIEV IKSS
Sbjct: 182 RLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Chy10G177690 vs. ExPASy TrEMBL
Match: A0A5A7SVU4 (Putative Ubiquitin-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001350 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.9e-66
Identity = 149/230 (64.78%), Postives = 165/230 (71.74%), Query Frame = 0


Query: 224 AHSHEEVEPLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVH 283
           A S EE EPLFDYSRVQPPSVVCLD      DEDSDADKSPAPF KRAKI N AATSSV+
Sbjct: 2   ADSAEEFEPLFDYSRVQPPSVVCLD------DEDSDADKSPAPFTKRAKIANLAATSSVN 61

Query: 284 GNPKEKQAEIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASV--------- 343
           GNPKEKQ EIED EE+WL PPPKVLVD  NRRG+DSTLK+LRLKKQE ASV         
Sbjct: 62  GNPKEKQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELRLKKQELASVALSAKNLLR 121

Query: 344 ----RAKI-------------------------VRIVVSVRDSDKEDLRKCRMLVDYKFE 403
                AK+                          +IV+SVRDSDKE+L++ R+ VD  FE
Sbjct: 122 EVEESAKVDVGNTSKDSLEPDLDVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFE 181

Query: 404 QLFEIYAIKLKVDLKSLVFVFDGDKIGPDDTPGGLGMEDDDMIEVRIKSS 416
           +LF+IYA KLK+D +SLVFVFDGDKIGP+DTPGGLGMEDDDMIEV IKSS
Sbjct: 182 RLFKIYADKLKIDPESLVFVFDGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Chy10G177690 vs. ExPASy TrEMBL
Match: A0A1S3BF31 (uncharacterized protein LOC103489317 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489317 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.9e-66
Identity = 149/230 (64.78%), Postives = 165/230 (71.74%), Query Frame = 0


Query: 224 AHSHEEVEPLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVH 283
           A S EE EPLFDYSRVQPPSVVCLD      DEDSDADKSPAPF KRAKI N AATSSV+
Sbjct: 2   ADSAEEFEPLFDYSRVQPPSVVCLD------DEDSDADKSPAPFTKRAKIANLAATSSVN 61

Query: 284 GNPKEKQAEIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASV--------- 343
           GNPKEKQ EIED EE+WL PPPKVLVD  NRRG+DSTLK+LRLKKQE ASV         
Sbjct: 62  GNPKEKQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELRLKKQELASVALSAKNLLR 121

Query: 344 ----RAKI-------------------------VRIVVSVRDSDKEDLRKCRMLVDYKFE 403
                AK+                          +IV+SVRDSDKE+L++ R+ VD  FE
Sbjct: 122 EVEESAKVDVGNTSKDSLEPDLDVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFE 181

Query: 404 QLFEIYAIKLKVDLKSLVFVFDGDKIGPDDTPGGLGMEDDDMIEVRIKSS 416
           +LF+IYA KLK+D +SLVFVFDGDKIGP+DTPGGLGMEDDDMIEV IKSS
Sbjct: 182 RLFKIYADKLKIDPESLVFVFDGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Chy10G177690 vs. ExPASy TrEMBL
Match: A0A6J1JEF8 (uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.7e-52
Identity = 126/226 (55.75%), Postives = 152/226 (67.26%), Query Frame = 0


Query: 228 EEVEPLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVHGNPK 287
           EE EPLF+YSRV P SV CLD      +EDSDA  SP PF+KR++I+N A TS V GNPK
Sbjct: 6   EEFEPLFNYSRVHPRSVDCLD------EEDSDACMSPEPFSKRSRILNPAVTSLVDGNPK 65

Query: 288 EKQAEIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASV------------- 347
           EKQ EIED+EE+WL PPPKV VDAKN  G+DSTLK+LRL K E ASV             
Sbjct: 66  EKQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEE 125

Query: 348 RAKI-------------------------VRIVVSVRDSDKEDLRKCRMLVDYKFEQLFE 407
            AK+                          +IV+SVRDSDKE+L++ R+ +D KFE+LF+
Sbjct: 126 SAKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFK 185

Query: 408 IYAIKLKVDLKSLVFVFDGDKIGPDDTPGGLGMEDDDMIEVRIKSS 416
           +YA K K+D KSLVF+FDGDK+GPDDTP GLGMEDDDMI+V I+ S
Sbjct: 186 MYAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of Chy10G177690 vs. NCBI nr
Match: KAE8647971.1 (hypothetical protein Csa_000113 [Cucumis sativus])

HSP 1 Score: 591 bits (1524), Expect = 6.11e-209
Identity = 336/465 (72.26%), Postives = 351/465 (75.48%), Query Frame = 0


Query: 1   MIGSLSSLYRSANSMKTNYFESNRKKEILLNPHLPSKLKYLLGSSSSASEPKYYTCSSCP 60
           MIGSLSSLYRSANSMKTNYFESNRKKE LLNPHLPSKLKYLLGSSSSASEPKY+TCSSCP
Sbjct: 1   MIGSLSSLYRSANSMKTNYFESNRKKESLLNPHLPSKLKYLLGSSSSASEPKYFTCSSCP 60

Query: 61  HSFSNGYWTRCTKCSEIMTTEASYVHYDRGDGYVVGARGMVTYMVMDDLTVKPITSSMST 120
            SFSNGY+ RCTKCSEIMTTEA YVHYD GDGYVVGA GMVTYMVMDDLTVKPITSSMST
Sbjct: 61  DSFSNGYFARCTKCSEIMTTEALYVHYDLGDGYVVGAGGMVTYMVMDDLTVKPITSSMST 120

Query: 121 ISVLTQLNVEDIRHIEEK---------GVELLRASLDSNKVLTDMFYYKLDLSTKPGIAV 180
           IS+LTQLNVEDIRHIEEK         GVELLRASLDSNKVLTDMFYYKLDLSTKPGIA 
Sbjct: 121 ISMLTQLNVEDIRHIEEKVIPFHLSNEGVELLRASLDSNKVLTDMFYYKLDLSTKPGIAE 180

Query: 181 THSDDNIYPSLPSLFLTLSITLLQSYSVFPIPLSLLLFSESVLSFPYPNPSHAHSHEEVE 240
           +                    +LQ++                          A   EE E
Sbjct: 181 S-------------------VILQTFF------------------------EADFAEEFE 240

Query: 241 PLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVHGNPKEKQA 300
           PLFDYSRV+PPSVV LDD+ITTLDEDSDADKSPAPFAKRAKIVN AATSSV+GNPKEKQ 
Sbjct: 241 PLFDYSRVKPPSVVYLDDRITTLDEDSDADKSPAPFAKRAKIVNLAATSSVNGNPKEKQV 300

Query: 301 EIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASV----------------- 360
           EIE KEEE LSPPPKVLVDAKNRRGKDSTLKKLRLKKQESA V                 
Sbjct: 301 EIEHKEEERLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESAFVALSTKNFPREAKESAKV 360

Query: 361 ------------------------RAKIVRIVVSVRDSDKEDLRKCRMLVDYKFEQLFEI 415
                                   RAK+VRIVVSVR+SDKE+LRKCRMLVDYKFEQLF++
Sbjct: 361 DVGNTSKDSLKPDLDVQTSLYSKERAKVVRIVVSVRNSDKEELRKCRMLVDYKFEQLFQM 420

[Close]

BLAST of Chy10G177690 vs. NCBI nr
Match: XP_004135076.1 (uncharacterized protein LOC101214853 [Cucumis sativus])

HSP 1 Score: 266 bits (680), Expect = 6.21e-84
Identity = 151/230 (65.65%), Postives = 168/230 (73.04%), Query Frame = 0


Query: 224 AHSHEEVEPLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVH 283
           A S EE EPLFDYSRVQPPSVVCLDD      EDSDADKSPAPF KRAKIVN AATSSV+
Sbjct: 2   ADSAEEFEPLFDYSRVQPPSVVCLDD------EDSDADKSPAPFTKRAKIVNPAATSSVN 61

Query: 284 GNPKEKQAEIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASVR-------- 343
           GNPKEKQ EIEDKEE+WL PPPKVLVDA+NR  +DSTLK+LRLKKQE ASV         
Sbjct: 62  GNPKEKQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLR 121

Query: 344 -----AKI-------------------------VRIVVSVRDSDKEDLRKCRMLVDYKFE 403
                AK+                          +IV+SVRDSDKE+L++ R+ VD KFE
Sbjct: 122 EVEESAKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKEELKQYRLFVDDKFE 181

Query: 404 QLFEIYAIKLKVDLKSLVFVFDGDKIGPDDTPGGLGMEDDDMIEVRIKSS 415
           +LF++YA KLK+D KSLVFVFDGDK+GPDDTPGGLGMEDDDMIEV IKSS
Sbjct: 182 RLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Chy10G177690 vs. NCBI nr
Match: XP_008446647.1 (PREDICTED: uncharacterized protein LOC103489317 isoform X1 [Cucumis melo] >KAA0034593.1 putative Ubiquitin-like superfamily protein [Cucumis melo var. makuwa] >TYK09144.1 putative Ubiquitin-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 262 bits (669), Expect = 2.82e-82
Identity = 149/230 (64.78%), Postives = 165/230 (71.74%), Query Frame = 0


Query: 224 AHSHEEVEPLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVH 283
           A S EE EPLFDYSRVQPPSVVCLDD      EDSDADKSPAPF KRAKI N AATSSV+
Sbjct: 2   ADSAEEFEPLFDYSRVQPPSVVCLDD------EDSDADKSPAPFTKRAKIANLAATSSVN 61

Query: 284 GNPKEKQAEIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASVR-------- 343
           GNPKEKQ EIED EE+WL PPPKVLVD  NRRG+DSTLK+LRLKKQE ASV         
Sbjct: 62  GNPKEKQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELRLKKQELASVALSAKNLLR 121

Query: 344 -----AKI-------------------------VRIVVSVRDSDKEDLRKCRMLVDYKFE 403
                AK+                          +IV+SVRDSDKE+L++ R+ VD  FE
Sbjct: 122 EVEESAKVDVGNTSKDSLEPDLDVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFE 181

Query: 404 QLFEIYAIKLKVDLKSLVFVFDGDKIGPDDTPGGLGMEDDDMIEVRIKSS 415
           +LF+IYA KLK+D +SLVFVFDGDKIGP+DTPGGLGMEDDDMIEV IKSS
Sbjct: 182 RLFKIYADKLKIDPESLVFVFDGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Chy10G177690 vs. NCBI nr
Match: KGN52648.2 (hypothetical protein Csa_008468 [Cucumis sativus])

HSP 1 Score: 257 bits (657), Expect = 1.59e-80
Identity = 147/230 (63.91%), Postives = 164/230 (71.30%), Query Frame = 0


Query: 224 AHSHEEVEPLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVH 283
           A S EE EPLFDYSRVQPPSVVCLD          DADKSPAPF KRAKIVN AATSSV+
Sbjct: 2   ADSAEEFEPLFDYSRVQPPSVVCLD----------DADKSPAPFTKRAKIVNPAATSSVN 61

Query: 284 GNPKEKQAEIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASVR-------- 343
           GNPKEKQ EIEDKEE+WL PPPKVLVDA+NR  +DSTLK+LRLKKQE ASV         
Sbjct: 62  GNPKEKQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLR 121

Query: 344 -----AKI-------------------------VRIVVSVRDSDKEDLRKCRMLVDYKFE 403
                AK+                          +IV+SVRDSDKE+L++ R+ VD KFE
Sbjct: 122 EVEESAKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKEELKQYRLFVDDKFE 181

Query: 404 QLFEIYAIKLKVDLKSLVFVFDGDKIGPDDTPGGLGMEDDDMIEVRIKSS 415
           +LF++YA KLK+D KSLVFVFDGDK+GPDDTPGGLGMEDDDMIEV IKSS
Sbjct: 182 RLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 221

[Close]

BLAST of Chy10G177690 vs. NCBI nr
Match: XP_038891511.1 (uncharacterized protein LOC120080907 [Benincasa hispida])

HSP 1 Score: 246 bits (628), Expect = 4.06e-76
Identity = 142/229 (62.01%), Postives = 161/229 (70.31%), Query Frame = 0


Query: 224 AHSHEEVEPLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVH 283
           A S EE EPLFDYSRVQP SVVCLDD      EDSDADKSPAPF+KR KIVN AATS V 
Sbjct: 2   ADSAEEFEPLFDYSRVQPRSVVCLDD------EDSDADKSPAPFSKRVKIVNPAATSLVD 61

Query: 284 GNPKEKQAEIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASVR-------- 343
            NPKEKQ EIEDKEE+WL PPPKVLVDA+N  G+DSTLK+LRLKKQE ASV         
Sbjct: 62  SNPKEKQVEIEDKEEDWLPPPPKVLVDAENMCGEDSTLKELRLKKQELASVALSAKNLLR 121

Query: 344 -----AKI------------------------VRIVVSVRDSDKEDLRKCRMLVDYKFEQ 403
                AK+                         +IV+SVRDSDKE+L++ R+ VD KFE+
Sbjct: 122 EVEESAKVDVGNKPDSLEPDLDVQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFER 181

Query: 404 LFEIYAIKLKVDLKSLVFVFDGDKIGPDDTPGGLGMEDDDMIEVRIKSS 415
           LF++YA K K+D K+L+FVFDGDK+GPDDTP  LGMEDDDMIEV IKSS
Sbjct: 182 LFKMYADKHKIDPKNLIFVFDGDKVGPDDTPVSLGMEDDDMIEVNIKSS 224

[Close]

BLAST of Chy10G177690 vs. TAIR 10
Match: AT1G68185.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-25
Identity = 78/223 (34.98%), Postives = 111/223 (49.78%), Query Frame = 0


Query: 228 EEVEPLFDYSRVQPPSVVCLDDKITTLDEDSDADKSPAPFAKRAKIVNRAATSSVHGNPK 287
           E++EPLFDY RVQP + VC+D      D+D DA  +P P  K+AK      + +V     
Sbjct: 6   EDLEPLFDYRRVQPANFVCID------DDDDDASVTPIP--KKAK-----TSQTVEKLDD 65

Query: 288 EKQAEIEDKEEEWLSPPPKVLVDAKNRRGKDSTLKKLRLKKQESASVRAKIVRIVVSVRD 347
           + +      +++WL PPPKV+ D      +DST+K LR KK E  S    +  ++  V +
Sbjct: 66  DVKVIEVTGDDDWLLPPPKVIFDKSKDSVEDSTIKALRSKKMELMSFTKTVGDVMQEVEE 125

Query: 348 S-----------------------------------DKEDLRKCRMLVDYKFEQLFEIYA 407
           S                                   DK+  +  R+  D KFE++ ++Y 
Sbjct: 126 SAKREVEESRNPSSETAAQLPSEPTNDRAKIVITIQDKDGQKTLRVFADEKFERVIKLYT 185

Query: 408 IKLKVDLKSLVFVFDGDKIGPDDTPGGLGMEDDDMIEVRIKSS 416
            K K+D ++LVF+FDGDKI P  TP  LGMED DMIEV  K +
Sbjct: 186 DKAKLDPQNLVFIFDGDKIDPSTTPSELGMEDHDMIEVHTKKT 215

[Close]

BLAST of Chy10G177690 vs. TAIR 10
Match: AT5G55856.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 6.3e-04
Identity = 23/70 (32.86%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 343 VSVRDSDKEDLRKC---RMLVDYKFEQLFEIYAIKLKVDLKSLVFVFDGDKIGPDDTPGG 402
           ++V+  +++D+  C   R+  D +  ++   Y+ K+ V++ +L F+FDG++I  + TP  
Sbjct: 15  ITVKVKNQDDI--CVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDGNRIKLNQTPNE 74

Query: 403 LGMEDDDMIE 410
           LG+ED+D IE
Sbjct: 75  LGLEDEDEIE 82

The following BLAST results are available for this feature:

BLAST of Chy10G177690 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G177690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ74	4.2e-181	72.15	Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G180310 P...	[more]
A0A0A0KWH7	5.3e-67	65.65	Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 P...	[more]
A0A5A7SVU4	9.9e-66	64.78	Putative Ubiquitin-like superfamily protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BF31	9.9e-66	64.78	uncharacterized protein LOC103489317 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1JEF8	3.7e-52	55.75	uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658...	[more]

BLAST of Chy10G177690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647971.1	6.11e-209	72.26	hypothetical protein Csa_000113 [Cucumis sativus]	[more]
XP_004135076.1	6.21e-84	65.65	uncharacterized protein LOC101214853 [Cucumis sativus]	[more]
XP_008446647.1	2.82e-82	64.78	PREDICTED: uncharacterized protein LOC103489317 isoform X1 [Cucumis melo] >KAA00...	[more]
KGN52648.2	1.59e-80	63.91	hypothetical protein Csa_008468 [Cucumis sativus]	[more]
XP_038891511.1	4.06e-76	62.01	uncharacterized protein LOC120080907 [Benincasa hispida]	[more]

BLAST of Chy10G177690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68185.1	2.2e-25	34.98	Ubiquitin-like superfamily protein	[more]
AT5G55856.1	6.3e-04	32.86	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 343..412 e-value: 1.0E-10 score: 41.3
None	No IPR available	GENE3D	3.10.20.90		coord: 318..415 e-value: 9.2E-17 score: 63.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..300
None	No IPR available	PANTHER	PTHR47813	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 226..334 coord: 339..415
None	No IPR available	CDD	cd01763	Ubl_SUMO_like	coord: 340..411 e-value: 5.50216E-19 score: 78.7761
IPR007750	Protein of unknown function DUF674	PFAM	PF05056	DUF674	coord: 2..160 e-value: 1.5E-18 score: 66.9
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 341..412

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G177690.1	Chy10G177690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding