Chy10G177630 (gene) Cucumber (hystrix) v1

Overview
NameChy10G177630
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRad60-SLD domain-containing protein
LocationchrH10: 12312442 .. 12313155 (+)
RNA-Seq ExpressionChy10G177630
SyntenyChy10G177630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATCCAAATCCCAACTCAAACTCAAAGCGAAAGCGAATTGATAAGTTTGAAGGTAGTGCTAGACAAAAAAAAGGAAGAAGATTCTATATGCTGAAGCTGCAAGAAATTTGTAGACTTCCTCTTCACAATACTTGCCCTTCCTGTTGGAACCATGGTTAAGTTGGTATCCAGTAGCAGCAAGCGCAAACACATGGCTGCAGCTGGTTCTCTGGAAAGCCTCTACCGCAGCGTGGAGAGCTTAAGTGTCAACCATTTTGATGCAAACCACAACAAAGACAGCCTCCTGAATCCTCAGCTCCCAACACCCACTGCTGATCAATCCCATATTCGAAGCCTTTTACAAATCCAATCTCCTTCGTCTTCACAACCAAAGACCTATTACACATGTTCATATTATAGTGGTTCTACTGCCATTAACTGTCGATGTTTTATTTCGACAAGTGGCACAAACTGTCCAAAATGCGGCAACTTCATGGAAGCTCATGCAAGTTATGTACATGGAGTGGGTGAAGCAATGCCTGTTGTGGGAGGTTATGTGAAAGGAGGGAACGCGGTTACGTACATGGTGATGGATGATCTCAGTGTTAAGCCCATGTCGTGTTCCACTATGTCCATCATTTCGGTTTTGAAGGAGTTGAATGTGAAGAATGTTGACCATGTTGATCAAAAGCTTATTCACTTCAACGTCCAACATGTTTGTGATTATTGA

mRNA sequence

ATGTCTATCCAAATCCCAACTCAAACTCAAAGCGAAAGCGAATTGATAAGTTTGAAGTTGGTATCCAGTAGCAGCAAGCGCAAACACATGGCTGCAGCTGGTTCTCTGGAAAGCCTCTACCGCAGCGTGGAGAGCTTAAGTGTCAACCATTTTGATGCAAACCACAACAAAGACAGCCTCCTGAATCCTCAGCTCCCAACACCCACTGCTGATCAATCCCATATTCGAAGCCTTTTACAAATCCAATCTCCTTCGTCTTCACAACCAAAGACCTATTACACATGTTCATATTATAGTGGTTCTACTGCCATTAACTGTCGATGTTTTATTTCGACAAGTGGCACAAACTGTCCAAAATGCGGCAACTTCATGGAAGCTCATGCAAGTTATGTACATGGAGTGGGTGAAGCAATGCCTGTTGTGGGAGGTTATGTGAAAGGAGGGAACGCGGTTACGTACATGGTGATGGATGATCTCAGTGTTAAGCCCATGTCGTGTTCCACTATGTCCATCATTTCGGTTTTGAAGGAGTTGAATGTGAAGAATGTTGACCATGTTGATCAAAAGCTTATTCACTTCAACGTCCAACATGTTTGTGATTATTGA

Coding sequence (CDS)

ATGTCTATCCAAATCCCAACTCAAACTCAAAGCGAAAGCGAATTGATAAGTTTGAAGTTGGTATCCAGTAGCAGCAAGCGCAAACACATGGCTGCAGCTGGTTCTCTGGAAAGCCTCTACCGCAGCGTGGAGAGCTTAAGTGTCAACCATTTTGATGCAAACCACAACAAAGACAGCCTCCTGAATCCTCAGCTCCCAACACCCACTGCTGATCAATCCCATATTCGAAGCCTTTTACAAATCCAATCTCCTTCGTCTTCACAACCAAAGACCTATTACACATGTTCATATTATAGTGGTTCTACTGCCATTAACTGTCGATGTTTTATTTCGACAAGTGGCACAAACTGTCCAAAATGCGGCAACTTCATGGAAGCTCATGCAAGTTATGTACATGGAGTGGGTGAAGCAATGCCTGTTGTGGGAGGTTATGTGAAAGGAGGGAACGCGGTTACGTACATGGTGATGGATGATCTCAGTGTTAAGCCCATGTCGTGTTCCACTATGTCCATCATTTCGGTTTTGAAGGAGTTGAATGTGAAGAATGTTGACCATGTTGATCAAAAGCTTATTCACTTCAACGTCCAACATGTTTGTGATTATTGA

Protein sequence

MSIQIPTQTQSESELISLKLVSSSSKRKHMAAAGSLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHIRSLLQIQSPSSSQPKTYYTCSYYSGSTAINCRCFISTSGTNCPKCGNFMEAHASYVHGVGEAMPVVGGYVKGGNAVTYMVMDDLSVKPMSCSTMSIISVLKELNVKNVDHVDQKLIHFNVQHVCDY*
Homology
BLAST of Chy10G177630 vs. ExPASy TrEMBL
Match: A0A6J1CBN0 (uncharacterized protein LOC111010169 OS=Momordica charantia OX=3673 GN=LOC111010169 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-25
Identity = 79/163 (48.47%), Postives = 112/163 (68.71%), Query Frame = 0

Query: 35  SLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHIRSLLQIQSPSSSQPKTYYT 94
           S+ ++YR+ ++L++N+F +  NKD LLNP LP+ T     ++SLLQIQ  S   P TYYT
Sbjct: 72  SIVNVYRTHQTLNLNYFASTRNKDILLNPNLPSAT-PSDELQSLLQIQ--SFHPPTTYYT 131

Query: 95  CSYYSGSTAINCR-CFISTSGTNCPKCGNFMEAHASYVHGVGEAMPV-VGGYVKGGNAVT 154
           C     ST   CR  F  T G  C +CG  M  +A+YV+G  EA P+ +GGYVKGG  VT
Sbjct: 132 CHV---STYNVCRYSFSGTYGAVCSRCGQSMTTNATYVYGAKEAKPLEMGGYVKGG-MVT 191

Query: 155 YMVMDDLSVKPMSCSTMSIISVLKELNVKNVDHVDQKLIHFNV 196
           +MVMDDL+VKP+S S+MS ISVL +L+V++V  +++KLI+ ++
Sbjct: 192 FMVMDDLTVKPIS-SSMSTISVLHQLHVEDVGQIEEKLIYLDI 226

BLAST of Chy10G177630 vs. ExPASy TrEMBL
Match: A0A1S3CF25 (uncharacterized protein LOC103500190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500190 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-20
Identity = 75/164 (45.73%), Postives = 100/164 (60.98%), Query Frame = 0

Query: 35  SLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHIRSLLQIQSPSSSQPKT-YY 94
           SL +LY SV++L + +F  N  K+ LLNP        +S + ++ QI+S SS  P T YY
Sbjct: 68  SLGNLYSSVKTLDIKYFKPNETKEKLLNP--------KSQLDTVFQIESSSSLAPPTNYY 127

Query: 95  TCSYYSGSTAINCRCFISTSGTNCPKCGNFMEAHASYVHGVGEAMPVVG--GYVKGGNAV 154
           TC    GS       F ST  T CPKC   M   A+YV+G+GE  P  G  GYV+GG  V
Sbjct: 128 TC---CGS------YFTSTVHTQCPKCFKSMVEPATYVYGLGELKPFEGGLGYVEGG--V 187

Query: 155 TYMVMDDLSVKPMSCSTMSIISVLKELNVKNVDHVDQKLIHFNV 196
            YMVMDDL+VKP+  S+MS I VLKEL V +V  +D+KL++ ++
Sbjct: 188 RYMVMDDLTVKPI-FSSMSTILVLKELEVDDVRMIDEKLVYLDI 211

BLAST of Chy10G177630 vs. ExPASy TrEMBL
Match: A0A1S3CF63 (uncharacterized protein LOC103500190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500190 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-20
Identity = 75/164 (45.73%), Postives = 100/164 (60.98%), Query Frame = 0

Query: 35  SLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHIRSLLQIQSPSSSQPKT-YY 94
           SL +LY SV++L + +F  N  K+ LLNP        +S + ++ QI+S SS  P T YY
Sbjct: 68  SLGNLYSSVKTLDIKYFKPNETKEKLLNP--------KSQLDTVFQIESSSSLAPPTNYY 127

Query: 95  TCSYYSGSTAINCRCFISTSGTNCPKCGNFMEAHASYVHGVGEAMPVVG--GYVKGGNAV 154
           TC    GS       F ST  T CPKC   M   A+YV+G+GE  P  G  GYV+GG  V
Sbjct: 128 TC---CGS------YFTSTVHTQCPKCFKSMVEPATYVYGLGELKPFEGGLGYVEGG--V 187

Query: 155 TYMVMDDLSVKPMSCSTMSIISVLKELNVKNVDHVDQKLIHFNV 196
            YMVMDDL+VKP+  S+MS I VLKEL V +V  +D+KL++ ++
Sbjct: 188 RYMVMDDLTVKPI-FSSMSTILVLKELEVDDVRMIDEKLVYLDI 211

BLAST of Chy10G177630 vs. ExPASy TrEMBL
Match: A0A0A0KQ74 (Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G180310 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.4e-19
Identity = 78/183 (42.62%), Postives = 108/183 (59.02%), Query Frame = 0

Query: 18  LKLVSS--SSKRKHMAAAGSLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHI 77
           LKL+S+  SS        GSL SLYRS  S+  N+F++N  K+SLLNP LP      S +
Sbjct: 96  LKLLSTAPSSPTIVTPMIGSLSSLYRSANSMKTNYFESNRKKESLLNPHLP------SKL 155

Query: 78  RSLLQIQSPSSSQPKTYYTCSYYSGSTAINCRCFISTSGTNCPKCGNFMEAHASYVHGVG 137
           + LL   S S+S+PK Y+TCS    S       F +     C KC   M   A YVH   
Sbjct: 156 KYLLG-SSSSASEPK-YFTCSSCPDS-------FSNGYFARCTKCSEIMTTEALYVH--- 215

Query: 138 EAMPVVGGYVKG-GNAVTYMVMDDLSVKPMSCSTMSIISVLKELNVKNVDHVDQKLIHFN 197
               +  GYV G G  VTYMVMDDL+VKP++ S+MS IS+L +LNV+++ H+++K+I F+
Sbjct: 216 --YDLGDGYVVGAGGMVTYMVMDDLTVKPIT-SSMSTISMLTQLNVEDIRHIEEKVIPFH 257

BLAST of Chy10G177630 vs. ExPASy TrEMBL
Match: A0A6J1GZH1 (uncharacterized protein LOC111458549 OS=Cucurbita moschata OX=3662 GN=LOC111458549 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 0

Query: 34  GSLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHIRSLLQIQSPSSSQPKTYY 93
           GSL SLYRS+E+L++ +++      + LN  LPTP   QS I  LL  Q+  SS PKTYY
Sbjct: 62  GSLGSLYRSLEALNITYYN-----QTQLNADLPTPIT-QSQILRLL--QNYPSSGPKTYY 121

Query: 94  TCSYYSGSTAINCRCFISTSGTNCPKCGNFMEAHASYVHGVGEAMPVVGGYVKGGNAVTY 153
           TCS    +T   C  F +T    CPKC   M + ASYV+   EA P+VG ++KGG  VTY
Sbjct: 122 TCS----NTTHCCYSFSATYNIQCPKCHCKMASPASYVYEPNEARPIVGDFLKGG-TVTY 181

Query: 154 MVMDDLSVKPMSCSTMSI 172
           +VMDDL+VKP+  ST+S+
Sbjct: 182 IVMDDLTVKPLPSSTISL 186

BLAST of Chy10G177630 vs. NCBI nr
Match: XP_022139200.1 (uncharacterized protein LOC111010169 [Momordica charantia])

HSP 1 Score: 127 bits (318), Expect = 4.52e-32
Identity = 79/163 (48.47%), Postives = 112/163 (68.71%), Query Frame = 0

Query: 35  SLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHIRSLLQIQSPSSSQPKTYYT 94
           S+ ++YR+ ++L++N+F +  NKD LLNP LP+ T     ++SLLQIQS     P TYYT
Sbjct: 72  SIVNVYRTHQTLNLNYFASTRNKDILLNPNLPSATPSDE-LQSLLQIQS--FHPPTTYYT 131

Query: 95  CSYYSGSTAINCR-CFISTSGTNCPKCGNFMEAHASYVHGVGEAMPV-VGGYVKGGNAVT 154
           C     ST   CR  F  T G  C +CG  M  +A+YV+G  EA P+ +GGYVKGG  VT
Sbjct: 132 CHV---STYNVCRYSFSGTYGAVCSRCGQSMTTNATYVYGAKEAKPLEMGGYVKGG-MVT 191

Query: 155 YMVMDDLSVKPMSCSTMSIISVLKELNVKNVDHVDQKLIHFNV 195
           +MVMDDL+VKP+S S+MS ISVL +L+V++V  +++KLI+ ++
Sbjct: 192 FMVMDDLTVKPIS-SSMSTISVLHQLHVEDVGQIEEKLIYLDI 226

BLAST of Chy10G177630 vs. NCBI nr
Match: XP_008461634.1 (PREDICTED: uncharacterized protein LOC103500190 isoform X2 [Cucumis melo])

HSP 1 Score: 109 bits (273), Expect = 1.54e-25
Identity = 75/166 (45.18%), Postives = 100/166 (60.24%), Query Frame = 0

Query: 35  SLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHIRSLLQIQSPSSSQPKT-YY 94
           SL +LY SV++L + +F  N  K+ LLNP+        S + ++ QI+S SS  P T YY
Sbjct: 68  SLGNLYSSVKTLDIKYFKPNETKEKLLNPK--------SQLDTVFQIESSSSLAPPTNYY 127

Query: 95  TC--SYYSGSTAINCRCFISTSGTNCPKCGNFMEAHASYVHGVGEAMPVVGG--YVKGGN 154
           TC  SY           F ST  T CPKC   M   A+YV+G+GE  P  GG  YV+GG 
Sbjct: 128 TCCGSY-----------FTSTVHTQCPKCFKSMVEPATYVYGLGELKPFEGGLGYVEGG- 187

Query: 155 AVTYMVMDDLSVKPMSCSTMSIISVLKELNVKNVDHVDQKLIHFNV 195
            V YMVMDDL+VKP+  S+MS I VLKEL V +V  +D+KL++ ++
Sbjct: 188 -VRYMVMDDLTVKPIF-SSMSTILVLKELEVDDVRMIDEKLVYLDI 211

BLAST of Chy10G177630 vs. NCBI nr
Match: XP_008461633.1 (PREDICTED: uncharacterized protein LOC103500190 isoform X1 [Cucumis melo])

HSP 1 Score: 109 bits (273), Expect = 1.91e-25
Identity = 75/166 (45.18%), Postives = 100/166 (60.24%), Query Frame = 0

Query: 35  SLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHIRSLLQIQSPSSSQPKT-YY 94
           SL +LY SV++L + +F  N  K+ LLNP+        S + ++ QI+S SS  P T YY
Sbjct: 68  SLGNLYSSVKTLDIKYFKPNETKEKLLNPK--------SQLDTVFQIESSSSLAPPTNYY 127

Query: 95  TC--SYYSGSTAINCRCFISTSGTNCPKCGNFMEAHASYVHGVGEAMPVVGG--YVKGGN 154
           TC  SY           F ST  T CPKC   M   A+YV+G+GE  P  GG  YV+GG 
Sbjct: 128 TCCGSY-----------FTSTVHTQCPKCFKSMVEPATYVYGLGELKPFEGGLGYVEGG- 187

Query: 155 AVTYMVMDDLSVKPMSCSTMSIISVLKELNVKNVDHVDQKLIHFNV 195
            V YMVMDDL+VKP+  S+MS I VLKEL V +V  +D+KL++ ++
Sbjct: 188 -VRYMVMDDLTVKPIF-SSMSTILVLKELEVDDVRMIDEKLVYLDI 211

BLAST of Chy10G177630 vs. NCBI nr
Match: XP_022957060.1 (uncharacterized protein LOC111458549 [Cucurbita moschata] >KAG6601016.1 hypothetical protein SDJN03_06249, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (260), Expect = 3.79e-24
Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 0

Query: 34  GSLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHIRSLLQIQSPSSSQPKTYY 93
           GSL SLYRS+E+L++ +++      + LN  LPTP   QS I  LLQ  +  SS PKTYY
Sbjct: 62  GSLGSLYRSLEALNITYYN-----QTQLNADLPTPIT-QSQILRLLQ--NYPSSGPKTYY 121

Query: 94  TCSYYSGSTAINCRCFISTSGTNCPKCGNFMEAHASYVHGVGEAMPVVGGYVKGGNAVTY 153
           TCS    +T   C  F +T    CPKC   M + ASYV+   EA P+VG ++KGG  VTY
Sbjct: 122 TCS----NTTHCCYSFSATYNIQCPKCHCKMASPASYVYEPNEARPIVGDFLKGGT-VTY 181

Query: 154 MVMDDLSVKPMSCSTMSI 171
           +VMDDL+VKP+  ST+S+
Sbjct: 182 IVMDDLTVKPLPSSTISL 186

BLAST of Chy10G177630 vs. NCBI nr
Match: KAG7031628.1 (hypothetical protein SDJN02_05669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104 bits (259), Expect = 5.34e-24
Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 0

Query: 34  GSLESLYRSVESLSVNHFDANHNKDSLLNPQLPTPTADQSHIRSLLQIQSPSSSQPKTYY 93
           GSL SLYRS+E+L++ +++      + LN  LPTP   QS I  LLQ  +  SS PKTYY
Sbjct: 62  GSLGSLYRSLEALNITYYN-----QTQLNADLPTPIT-QSQILRLLQ--NYPSSGPKTYY 121

Query: 94  TCSYYSGSTAINCRCFISTSGTNCPKCGNFMEAHASYVHGVGEAMPVVGGYVKGGNAVTY 153
           TCS    +T   C  F +T    CPKC   M + ASYV+   EA P+VG ++KGG  VTY
Sbjct: 122 TCS----NTTHCCYSFSATYNIQCPKCHCKMGSPASYVYEPNEARPIVGDFLKGGT-VTY 181

Query: 154 MVMDDLSVKPMSCSTMSI 171
           +VMDDL+VKP+  ST+S+
Sbjct: 182 IVMDDLTVKPLPSSTISL 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CBN04.1e-2548.47uncharacterized protein LOC111010169 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A1S3CF255.2e-2045.73uncharacterized protein LOC103500190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CF635.2e-2045.73uncharacterized protein LOC103500190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0KQ744.4e-1942.62Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G180310 P... [more]
A0A6J1GZH11.3e-1848.55uncharacterized protein LOC111458549 OS=Cucurbita moschata OX=3662 GN=LOC1114585... [more]
Match NameE-valueIdentityDescription
XP_022139200.14.52e-3248.47uncharacterized protein LOC111010169 [Momordica charantia][more]
XP_008461634.11.54e-2545.18PREDICTED: uncharacterized protein LOC103500190 isoform X2 [Cucumis melo][more]
XP_008461633.11.91e-2545.18PREDICTED: uncharacterized protein LOC103500190 isoform X1 [Cucumis melo][more]
XP_022957060.13.79e-2448.55uncharacterized protein LOC111458549 [Cucurbita moschata] >KAG6601016.1 hypothet... [more]
KAG7031628.15.34e-2448.55hypothetical protein SDJN02_05669, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007750Protein of unknown function DUF674PFAMPF05056DUF674coord: 19..199
e-value: 1.2E-22
score: 80.4
IPR007750Protein of unknown function DUF674PANTHERPTHR33103OS01G0153900 PROTEINcoord: 28..196
NoneNo IPR availablePANTHERPTHR33103:SF54SUBFAMILY NOT NAMEDcoord: 28..196

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G177630.1Chy10G177630.1mRNA