Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGACACCCATTCGCCCAATCTAGTTGCCCAAAATTTCCCTAGTGAAGACTCATGGGAAGGTGTGGCCCAATGGTCAGAGAAGTTGCAGCAAGAGACAGATACAGTTTGGCCCAAAAGTATAGAACTTTCGCTTCCTCAGACCTGTCGCTTAGGGATTGTCAACGACAGCATGGAAGGTCTGAAGAGCCTATGGGAGAGTTTGACCGAGGAGCATAGAATAGAGTTTGTAAAGGCATACGGGAATATAGCTGACCTCATGTATACCAGCATTAATGCACATGCTCTACAAGCATTGGTCCATTTTTGGGATCCTGTGTTAAAATGTTTCACATTCAACACATTTCATCGGAA
mRNA sequence
ATGGTAGACACCCATTCGCCCAATCTAGTTGCCCAAAATTTCCCTAGTGAAGACTCATGGGAAGGTGTGGCCCAATGGTCAGAGAAGTTGCAGCAAGAGACAGATACAGTTTGGCCCAAAAGTATAGAACTTTCGCTTCCTCAGACCTGTCGCTTAGGGATTGTCAACGACAGCATGGAAGGTCTGAAGAGCCTATGGGAGAGTTTGACCGAGGAGCATAGAATAGAGTTTGTAAAGGCATACGGGAATATAGCTGACCTCATGTATACCAGCATTAATGCACATGCTCTACAAGCATTGGTCCATTTTTGGGATCCTGTGTTAAAATGTTTCACATTCAACACATTTCATCGGAA
Coding sequence (CDS)
ATGGTAGACACCCATTCGCCCAATCTAGTTGCCCAAAATTTCCCTAGTGAAGACTCATGGGAAGGTGTGGCCCAATGGTCAGAGAAGTTGCAGCAAGAGACAGATACAGTTTGGCCCAAAAGTATAGAACTTTCGCTTCCTCAGACCTGTCGCTTAGGGATTGTCAACGACAGCATGGAAGGTCTGAAGAGCCTATGGGAGAGTTTGACCGAGGAGCATAGAATAGAGTTTGTAAAGGCATACGGGAATATAGCTGACCTCATGTATACCAGCATTAATGCACATGCTCTACAAGCATTGGTCCATTTTTGGGATCCTGTGTTAAAATGTTTCACATTCAACACATTTCATCGGAA
Protein sequence
MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSMEGLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTFHRX
Homology
BLAST of Chy10G176730 vs. ExPASy TrEMBL
Match:
A0A0A0LTS2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328370 PE=4 SV=1)
HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 103/116 (88.79%), Postives = 108/116 (93.10%), Query Frame = 0
Query: 1 MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSME 60
M+ THSPNLVAQNFPSEDSWEG+ QW EKLQQETDT+WPKSIELSLPQTCRL IVN+SME
Sbjct: 1 MIGTHSPNLVAQNFPSEDSWEGMTQWLEKLQQETDTIWPKSIELSLPQTCRLEIVNNSME 60
Query: 61 GLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTF 117
GLKSLWESLT+EHRIEFVKAY NI DL YTSINAHALQALV FWDPVLKCFTFNTF
Sbjct: 61 GLKSLWESLTKEHRIEFVKAYRNITDLKYTSINAHALQALVQFWDPVLKCFTFNTF 116
BLAST of Chy10G176730 vs. ExPASy TrEMBL
Match:
A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)
HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 74/116 (63.79%), Postives = 92/116 (79.31%), Query Frame = 0
Query: 1 MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSME 60
MVDTH+ +VAQ P+EDSWE V+QWSE Q ++ + WPK +E+ LP+TC+LG +N+++E
Sbjct: 1 MVDTHASEVVAQLIPNEDSWENVSQWSEHFQLKSGSSWPKKLEVPLPKTCQLGFINNNLE 60
Query: 61 GLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTF 117
LKSLWESL E R EF KAYG+I DL+YT+IN LQAL HFWDPVLKCFTFNTF
Sbjct: 61 ELKSLWESLMPEQRAEFTKAYGSICDLLYTTINTSTLQALSHFWDPVLKCFTFNTF 116
BLAST of Chy10G176730 vs. ExPASy TrEMBL
Match:
A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 7.3e-38
Identity = 73/116 (62.93%), Postives = 91/116 (78.45%), Query Frame = 0
Query: 1 MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSME 60
MVDTH+ +VA P+EDSWE V+QWSE Q E+ WPK +E+ LP+TC+LG +N+++E
Sbjct: 1 MVDTHASEVVALLIPNEDSWENVSQWSEHFQLESGLSWPKKLEVPLPKTCQLGFINNNLE 60
Query: 61 GLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTF 117
LKSLWESL E R +F+KAYG+I DL+YT+IN LQAL HFWDPVLKCFTFNTF
Sbjct: 61 ELKSLWESLMPEQRAKFIKAYGSIGDLLYTTINTSTLQALSHFWDPVLKCFTFNTF 116
BLAST of Chy10G176730 vs. ExPASy TrEMBL
Match:
A0A5A7VHI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00080 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 4.0e-36
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = 0
Query: 1 MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSME 60
MVDTH+ +VAQ P+EDSW+ V+QWSE Q E+ WPK +E+ LP+TC+L +N+++E
Sbjct: 1 MVDTHASEVVAQLIPNEDSWKNVSQWSEHFQLESGLSWPKKLEVPLPKTCQLEFINNNLE 60
Query: 61 GLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTF 117
LKSLWESL E R EF KAYG+I DL+YT+IN LQAL HFWDPVLK FTFNTF
Sbjct: 61 ELKSLWESLMPEQRAEFTKAYGSIGDLLYTTINTSTLQALSHFWDPVLKYFTFNTF 116
BLAST of Chy10G176730 vs. ExPASy TrEMBL
Match:
A0A5D3DZ69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3695G00150 PE=4 SV=1)
HSP 1 Score: 159.1 bits (401), Expect = 1.2e-35
Identity = 69/116 (59.48%), Postives = 88/116 (75.86%), Query Frame = 0
Query: 1 MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSME 60
MVDT++ +V Q P+ED WE V+QWSE Q E+ WPK +E+ LP+TC+LG +N++++
Sbjct: 1 MVDTYASEVVVQLIPNEDLWENVSQWSEHFQLESGVSWPKKLEVQLPKTCQLGFINNNLK 60
Query: 61 GLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTF 117
LKSLWESL E R EF KAYG+I DL+YT+IN LQAL HFWDP+LKCF FNTF
Sbjct: 61 ELKSLWESLMPEQRAEFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTF 116
BLAST of Chy10G176730 vs. NCBI nr
Match:
KGN65325.1 (hypothetical protein Csa_019916 [Cucumis sativus])
HSP 1 Score: 221 bits (563), Expect = 2.21e-72
Identity = 103/116 (88.79%), Postives = 108/116 (93.10%), Query Frame = 0
Query: 1 MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSME 60
M+ THSPNLVAQNFPSEDSWEG+ QW EKLQQETDT+WPKSIELSLPQTCRL IVN+SME
Sbjct: 1 MIGTHSPNLVAQNFPSEDSWEGMTQWLEKLQQETDTIWPKSIELSLPQTCRLEIVNNSME 60
Query: 61 GLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTF 116
GLKSLWESLT+EHRIEFVKAY NI DL YTSINAHALQALV FWDPVLKCFTFNTF
Sbjct: 61 GLKSLWESLTKEHRIEFVKAYRNITDLKYTSINAHALQALVQFWDPVLKCFTFNTF 116
BLAST of Chy10G176730 vs. NCBI nr
Match:
KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 168 bits (426), Expect = 1.72e-47
Identity = 74/116 (63.79%), Postives = 92/116 (79.31%), Query Frame = 0
Query: 1 MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSME 60
MVDTH+ +VAQ P+EDSWE V+QWSE Q ++ + WPK +E+ LP+TC+LG +N+++E
Sbjct: 1 MVDTHASEVVAQLIPNEDSWENVSQWSEHFQLKSGSSWPKKLEVPLPKTCQLGFINNNLE 60
Query: 61 GLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTF 116
LKSLWESL E R EF KAYG+I DL+YT+IN LQAL HFWDPVLKCFTFNTF
Sbjct: 61 ELKSLWESLMPEQRAEFTKAYGSICDLLYTTINTSTLQALSHFWDPVLKCFTFNTF 116
BLAST of Chy10G176730 vs. NCBI nr
Match:
TYK28912.1 (hypothetical protein E5676_scaffold3695G00150 [Cucumis melo var. makuwa])
HSP 1 Score: 159 bits (401), Expect = 2.89e-47
Identity = 69/116 (59.48%), Postives = 88/116 (75.86%), Query Frame = 0
Query: 1 MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSME 60
MVDT++ +V Q P+ED WE V+QWSE Q E+ WPK +E+ LP+TC+LG +N++++
Sbjct: 1 MVDTYASEVVVQLIPNEDLWENVSQWSEHFQLESGVSWPKKLEVQLPKTCQLGFINNNLK 60
Query: 61 GLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTF 116
LKSLWESL E R EF KAYG+I DL+YT+IN LQAL HFWDP+LKCF FNTF
Sbjct: 61 ELKSLWESLMPEQRAEFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTF 116
BLAST of Chy10G176730 vs. NCBI nr
Match:
TYK02649.1 (hypothetical protein E5676_scaffold280G00610 [Cucumis melo var. makuwa])
HSP 1 Score: 156 bits (394), Expect = 3.80e-46
Identity = 68/116 (58.62%), Postives = 90/116 (77.59%), Query Frame = 0
Query: 1 MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSME 60
MVDT++ V Q P+ED WE V+QWSE Q E+ W K +E+SLP+TC+LG +N+++E
Sbjct: 1 MVDTYAFEAVVQLIPNEDLWENVSQWSEHFQLESGVSWLKKLEVSLPKTCQLGFINNNLE 60
Query: 61 GLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTF 116
LKSLWE+L EHR+EF KAYG+I D++YT+I+ LQAL +FWDP+LKCFTFNTF
Sbjct: 61 ELKSLWENLMLEHRVEFTKAYGSIGDILYTTISTSTLQALSYFWDPMLKCFTFNTF 116
BLAST of Chy10G176730 vs. NCBI nr
Match:
KAA0065295.1 (uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa])
HSP 1 Score: 160 bits (405), Expect = 4.45e-45
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = 0
Query: 1 MVDTHSPNLVAQNFPSEDSWEGVAQWSEKLQQETDTVWPKSIELSLPQTCRLGIVNDSME 60
MVDTH+ +VAQ P+EDSW+ V+QWSE Q E+ WPK +E+ LP+TC+L +N+++E
Sbjct: 1 MVDTHASEVVAQLIPNEDSWKNVSQWSEHFQLESGLSWPKKLEVPLPKTCQLEFINNNLE 60
Query: 61 GLKSLWESLTEEHRIEFVKAYGNIADLMYTSINAHALQALVHFWDPVLKCFTFNTF 116
LKSLWESL E R EF KAYG+I DL+YT+IN LQAL HFWDPVLK FTFNTF
Sbjct: 61 ELKSLWESLMPEQRAEFTKAYGSIGDLLYTTINTSTLQALSHFWDPVLKYFTFNTF 116
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LTS2 | 1.9e-54 | 88.79 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328370 PE=4 SV=1 | [more] |
| A0A5A7TXA1 | 1.5e-38 | 63.79 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
| A0A5A7SUT0 | 7.3e-38 | 62.93 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... | [more] |
| A0A5A7VHI3 | 4.0e-36 | 62.07 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3DZ69 | 1.2e-35 | 59.48 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN65325.1 | 2.21e-72 | 88.79 | hypothetical protein Csa_019916 [Cucumis sativus] | [more] |
| KAA0046606.1 | 1.72e-47 | 63.79 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
| TYK28912.1 | 2.89e-47 | 59.48 | hypothetical protein E5676_scaffold3695G00150 [Cucumis melo var. makuwa] | [more] |
| TYK02649.1 | 3.80e-46 | 58.62 | hypothetical protein E5676_scaffold280G00610 [Cucumis melo var. makuwa] | [more] |
| KAA0065295.1 | 4.45e-45 | 62.07 | uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
