Chy10G176310 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G176310
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Flocculation protein FLO11-like
Location	chrH10: 10448628 .. 10449382 (-)
RNA-Seq Expression	Chy10G176310
Synteny	Chy10G176310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCCACTCGAACGAAGTATTATCAGCCTATTCTTCCCCCAATGTCAAATCTATCGGGTAGTTGTGTTCCCTCTAGCAAACACCTAAGGTTCAAGATGATTCTGCCTCAAAACCCTTTGAAAAGACTGCACAAAATCAGTAAGATTCCAAAATTCTCATATTTTGAGTCTTCTCTCTCTATGCATGAAGCCTATTTGGTACTCCCTTCTTGAATTTCTAACTCTCTTCGAGCAAGGTTTCAGATAAGACTACTTCTCCTGTCCAAGCTATTGTGACTTCTTGCGCATCATCATCTCGTCGTGCTAGGTTTCATGTTTCTGACTCTGACTCTGTTGAGACTATTGCTATTGTTTCCAACTCCACTAGTGAAGACAATATAGTTCTCTCTGAAATTTTGAAAAGGAAAGCATCTACCAATGTTTCTCCTCCTAAGAACCCAACATCTGTTAAAGGTAAGAAACCTATTATATCTCGTCCCTCAAATGTTGATGATCTATATAAAGTATTGTTTTAGATTTCCCTTTTTACCACATCAGACATCTTTCAAGTGTCCTGTCCCGGCTACTGCTCTTGTTTCATCTCATGAACAGAAATCTACTAATACCACTATTGAGGACTTGTTCACTGAATTTGCTCAAGACAGTGAGGGTCCTGGCCCTGGTGCTCATTCACACTCATCCTCTGCTGACACCTCTACTAAGTCGGCTCCTTACCAGGCTTCACATCTACCTCTATATATGATCCTCCACAG

mRNA sequence

ATGATCTCCACTCGAACGAAGTATTATCAGCCTATTCTTCCCCCAATGTCAAATCTATCGGGTAGTTGTGTTCCCTCTAGCAAACACCTAAGGTTCAAGATGATTCTGCCTCAAAACCCTTTGAAAAGACTGCACAAAATCAATAAGACTACTTCTCCTGTCCAAGCTATTGTGACTTCTTGCGCATCATCATCTCGTCGTGCTAGGTTTCATGTTTCTGACTCTGACTCTGTTGAGACTATTGCTATTGTTTCCAACTCCACTAGTGAAGACAATATAGTTCTCTCTGAAATTTTGAAAAGGAAAGCATCTACCAATGTTTCTCCTCCTAAGAACCCAACATCTGTTAAAGGTAAGAAACCTATTATATCTCGTCCCTCAAATGTTGATGATCTATATAAAAAATCTACTAATACCACTATTGAGGACTTGTTCACTGAATTTGCTCAAGACAGTGAGGGTCCTGGCCCTGGTGCTCATTCACACTCATCCTCTGCTGACACCTCTACTAAGTCGGCTCCTTACCAGGCTTCACATCTACCTCTATATATGATCCTCCACAG

Coding sequence (CDS)

ATGATCTCCACTCGAACGAAGTATTATCAGCCTATTCTTCCCCCAATGTCAAATCTATCGGGTAGTTGTGTTCCCTCTAGCAAACACCTAAGGTTCAAGATGATTCTGCCTCAAAACCCTTTGAAAAGACTGCACAAAATCAATAAGACTACTTCTCCTGTCCAAGCTATTGTGACTTCTTGCGCATCATCATCTCGTCGTGCTAGGTTTCATGTTTCTGACTCTGACTCTGTTGAGACTATTGCTATTGTTTCCAACTCCACTAGTGAAGACAATATAGTTCTCTCTGAAATTTTGAAAAGGAAAGCATCTACCAATGTTTCTCCTCCTAAGAACCCAACATCTGTTAAAGGTAAGAAACCTATTATATCTCGTCCCTCAAATGTTGATGATCTATATAAAAAATCTACTAATACCACTATTGAGGACTTGTTCACTGAATTTGCTCAAGACAGTGAGGGTCCTGGCCCTGGTGCTCATTCACACTCATCCTCTGCTGACACCTCTACTAAGTCGGCTCCTTACCAGGCTTCACATCTACCTCTATATATGATCCTCCACAG

Protein sequence

MISTRTKYYQPILPPMSNLSGSCVPSSKHLRFKMILPQNPLKRLHKINKTTSPVQAIVTSCASSSRRARFHVSDSDSVETIAIVSNSTSEDNIVLSEILKRKASTNVSPPKNPTSVKGKKPIISRPSNVDDLYKKSTNTTIEDLFTEFAQDSEGPGPGAHSHSSSADTSTKSAPYQASHLPLYMILHX

Homology

[Close]

BLAST of Chy10G176310 vs. ExPASy TrEMBL
Match: A0A5A7SV86 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00470 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 65/185 (35.14%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 1   MISTRTKYYQPILPPMSNLSGSCVPSSKHLRFKMILPQNPLKRLHKINK-----TTSPVQ 60
           M++TR  YYQP  PPMS  S S  P+SKH RFKMIL ++P +RL + ++      +  ++
Sbjct: 1   MVTTRKSYYQPYFPPMSTPSSSPNPTSKHKRFKMILARHPYQRLRRTSELPPASCSKSIE 60

Query: 61  AIVTSCA--SSSRRARFHVSDSDSVETIAIVSNSTSEDNIVLSEILKRKASTNVSPP--K 120
              ++C+   S R+ R  +S+S+S E +A   +S  E N+VL+++LK KA+T  S    K
Sbjct: 61  VSPSACSRPDSQRKPRVIISNSESEEDVASEPSSLDEGNVVLADVLKWKATTFASATHVK 120

Query: 121 NPTSVKGKKPIISRPSNVDDLYKKSTNTTIEDLFTEFAQDSEGPGPGAHSHSSSADTSTK 177
           +PT+ K  KP   +       +  S++  I+DLF EF       G G      + ++  +
Sbjct: 121 SPTTDKKFKPFNQK---TQKNFPHSSDEPIDDLFVEFQHVPAPHGEGTSYAPLAINSLPE 180

[Close]

BLAST of Chy10G176310 vs. ExPASy TrEMBL
Match: A0A5A7UBA4 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00390 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 60/181 (33.15%), Postives = 85/181 (46.96%), Query Frame = 0


Query: 25  PSSKHLRFKMILPQNPLKRLH------------------------KINKTTS--PVQAIV 84
           P+SK  R+KMIL ++P  RL                         + +K TS  P++  +
Sbjct: 10  PTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDTSKTPLKPTI 69

Query: 85  ----------TSCASSSRRARFHVSDSDSVETIAIVSNSTSEDNIVLSEILKRKASTNVS 144
                      SC SS R+ R  + DS+S+ETI + S S  EDN+VLS +LKRKA+    
Sbjct: 70  YTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVLKRKATAIAP 129

Query: 145 PPKNPTSVKGKKPIISRPSNVDDLYKKSTNTTIEDLFTEFAQDSEGPGPGAHSHSSSADT 170
             K  T  + KKP  +RP+NV++LY+K   T I           E P  G H   S+  +
Sbjct: 130 CAKGDTPERPKKPKTTRPTNVEELYEKLFGTPI--------SSHEAPSSGKHPSKSTLSS 182

[Close]

BLAST of Chy10G176310 vs. ExPASy TrEMBL
Match: A0A5D3BFA1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00410 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 60/181 (33.15%), Postives = 85/181 (46.96%), Query Frame = 0


Query: 25  PSSKHLRFKMILPQNPLKRLH------------------------KINKTTS--PVQAIV 84
           P+SK  R+KMIL ++P  RL                         + +K TS  P++  +
Sbjct: 10  PTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDTSKTPLKPTI 69

Query: 85  ----------TSCASSSRRARFHVSDSDSVETIAIVSNSTSEDNIVLSEILKRKASTNVS 144
                      SC SS R+ R  + DS+S+ETI + S S  EDN+VLS +LKRKA+    
Sbjct: 70  YTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVLKRKATAIAP 129

Query: 145 PPKNPTSVKGKKPIISRPSNVDDLYKKSTNTTIEDLFTEFAQDSEGPGPGAHSHSSSADT 170
             K  T  + KKP  +RP+NV++LY+K   T I           E P  G H   S+  +
Sbjct: 130 CAKGDTPERPKKPKTTRPTNVEELYEKLFGTPI--------SSHEAPSSGKHPSKSTLSS 182

[Close]

BLAST of Chy10G176310 vs. ExPASy TrEMBL
Match: A0A5D3BAD6 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002360 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 0


Query: 16  MSNLSGSCVPSSKHLRFKMILPQNPLKRLHKINKTTSPVQAIVTSCASSSRRARFHVSDS 75
           MS  S S   + K  R+KMI  +NPL+  + +      V   V S  SS+RR +      
Sbjct: 1   MSTPSASTPSTEKPKRYKMIHTRNPLRGYNAL------VNPPVVSRPSSTRRVK------ 60

Query: 76  DSVETIAIVSNSTSEDNIVLSEILKRKASTNVSPPKNPTSVKGKKPIISRPSNVDDLYKK 135
            S++T AI SNS  ED+++LSE+LKRK +T  S  K  + VK K   +++PS   +LY  
Sbjct: 61  -SIKTTAIDSNSFDEDHVLLSEVLKRKTNTQASTSKQSSLVKLKNRKVAKPSIAIELY-- 120

Query: 136 STNTTIEDLFTEFAQDSEGPGPGAHSHSSS 166
                 E+LF        G  P  H +SSS
Sbjct: 121 ------EELF--------GTPPSDHRNSSS 121

[Close]

BLAST of Chy10G176310 vs. ExPASy TrEMBL
Match: A0A5D3D2R5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00250 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 47/120 (39.17%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 16  MSNLSGSCVPSSKHLRFKMILPQNPLKRLHKINKTTSPVQAIVTSCASSSRRARFHVSDS 75
           MS    S V SSK         + PLK L  +  T SP         S  RR R  +SDS
Sbjct: 1   MSMHEESVVASSKE------TTKPPLKPL-TVTDTQSPSSRFAN--FSHQRRPRIIISDS 60

Query: 76  DSVETIAIVSNSTSEDNIVLSEILKRKASTNVSPPKNPTSVKGKKPIISRPSNVDDLYKK 135
            S+E +A  S S+ +DN+VLS +LKRKAS+     K   S   KKP + R SN ++LY++
Sbjct: 61  KSIEIVAAESESSEDDNVVLSNVLKRKASSKAPICKESVSDLSKKPGVGRSSNANELYEE 111

[Close]

BLAST of Chy10G176310 vs. NCBI nr
Match: KAA0033876.1 (uncharacterized protein E6C27_scaffold43059G00610 [Cucumis melo var. makuwa] >TYK01260.1 uncharacterized protein E5676_scaffold49G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.64e-17
Identity = 65/185 (35.14%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 1   MISTRTKYYQPILPPMSNLSGSCVPSSKHLRFKMILPQNPLKRLHKINKT-----TSPVQ 60
           M++TR  YYQP  PPMS  S S  P+SKH RFKMIL ++P +RL + ++      +  ++
Sbjct: 1   MVTTRKSYYQPYFPPMSTPSSSPNPTSKHKRFKMILARHPYQRLRRTSELPPASCSKSIE 60

Query: 61  AIVTSCA--SSSRRARFHVSDSDSVETIAIVSNSTSEDNIVLSEILKRKASTNVSPP--K 120
              ++C+   S R+ R  +S+S+S E +A   +S  E N+VL+++LK KA+T  S    K
Sbjct: 61  VSPSACSRPDSQRKPRVIISNSESEEDVASEPSSLDEGNVVLADVLKWKATTFASATHVK 120

Query: 121 NPTSVKGKKPIISRPSNVDDLYKKSTNTTIEDLFTEFAQDSEGPGPGAHSHSSSADTSTK 176
           +PT+ K  KP   +       +  S++  I+DLF EF       G G      + ++  +
Sbjct: 121 SPTTDKKFKPFNQK---TQKNFPHSSDEPIDDLFVEFQHVPAPHGEGTSYAPLAINSLPE 180

[Close]

BLAST of Chy10G176310 vs. NCBI nr
Match: TYJ97943.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 3.51e-11
Identity = 60/181 (33.15%), Postives = 85/181 (46.96%), Query Frame = 0


Query: 25  PSSKHLRFKMILPQNPLKRLH------------------------KINKTTS--PVQAIV 84
           P+SK  R+KMIL ++P  RL                         + +K TS  P++  +
Sbjct: 10  PTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDTSKTPLKPTI 69

Query: 85  T----------SCASSSRRARFHVSDSDSVETIAIVSNSTSEDNIVLSEILKRKASTNVS 144
                      SC SS R+ R  + DS+S+ETI + S S  EDN+VLS +LKRKA+    
Sbjct: 70  YTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVLKRKATAIAP 129

Query: 145 PPKNPTSVKGKKPIISRPSNVDDLYKKSTNTTIEDLFTEFAQDSEGPGPGAHSHSSSADT 169
             K  T  + KKP  +RP+NV++LY+K   T I           E P  G H   S+  +
Sbjct: 130 CAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSH--------EAPSSGKHPSKSTLSS 182

[Close]

BLAST of Chy10G176310 vs. NCBI nr
Match: KAA0051667.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 3.54e-11
Identity = 60/181 (33.15%), Postives = 85/181 (46.96%), Query Frame = 0


Query: 25  PSSKHLRFKMILPQNPLKRLH------------------------KINKTTS--PVQAIV 84
           P+SK  R+KMIL ++P  RL                         + +K TS  P++  +
Sbjct: 10  PTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDTSKTPLKPTI 69

Query: 85  T----------SCASSSRRARFHVSDSDSVETIAIVSNSTSEDNIVLSEILKRKASTNVS 144
                      SC SS R+ R  + DS+S+ETI + S S  EDN+VLS +LKRKA+    
Sbjct: 70  YTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVLKRKATAIAP 129

Query: 145 PPKNPTSVKGKKPIISRPSNVDDLYKKSTNTTIEDLFTEFAQDSEGPGPGAHSHSSSADT 169
             K  T  + KKP  +RP+NV++LY+K   T I           E P  G H   S+  +
Sbjct: 130 CAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSH--------EAPSSGKHPSKSTLSS 182

[Close]

BLAST of Chy10G176310 vs. NCBI nr
Match: KAA0032272.1 (uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK17076.1 uncharacterized protein E5676_scaffold1327G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.98e-07
Identity = 47/120 (39.17%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 16  MSNLSGSCVPSSKHLRFKMILPQNPLKRLHKINKTTSPVQAIVTSCASSSRRARFHVSDS 75
           MS    S V SSK         + PLK L  +  T SP         S  RR R  +SDS
Sbjct: 1   MSMHEESVVASSKETT------KPPLKPL-TVTDTQSPSSRFAN--FSHQRRPRIIISDS 60

Query: 76  DSVETIAIVSNSTSEDNIVLSEILKRKASTNVSPPKNPTSVKGKKPIISRPSNVDDLYKK 135
            S+E +A  S S+ +DN+VLS +LKRKAS+     K   S   KKP + R SN ++LY++
Sbjct: 61  KSIEIVAAESESSEDDNVVLSNVLKRKASSKAPICKESVSDLSKKPGVGRSSNANELYEE 111

[Close]

BLAST of Chy10G176310 vs. NCBI nr
Match: KAA0036860.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYJ95924.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 9.64e-07
Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 16  MSNLSGSCVPSSKHLRFKMILPQNPLKRLHKINKTTSPVQAIVTSCASSSRRARFHVSDS 75
           MS  S S   + K  R+KMI  +NPL+  + +      V   V S  SS+RR +      
Sbjct: 1   MSTPSASTPSTEKPKRYKMIHTRNPLRGYNAL------VNPPVVSRPSSTRRVK------ 60

Query: 76  DSVETIAIVSNSTSEDNIVLSEILKRKASTNVSPPKNPTSVKGKKPIISRPSNVDDLYKK 135
            S++T AI SNS  ED+++LSE+LKRK +T  S  K  + VK K   +++PS   +LY++
Sbjct: 61  -SIKTTAIDSNSFDEDHVLLSEVLKRKTNTQASTSKQSSLVKLKNRKVAKPSIAIELYEE 115

Query: 136 STNTTIED 143
              T   D
Sbjct: 121 LFGTPPSD 115

The following BLAST results are available for this feature:

BLAST of Chy10G176310 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G176310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SV86	1.1e-14	35.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UBA4	1.3e-09	33.15	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BFA1	1.3e-09	33.15	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BAD6	1.2e-05	36.00	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3D2R5	2.0e-05	39.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Chy10G176310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033876.1	1.64e-17	35.14	uncharacterized protein E6C27_scaffold43059G00610 [Cucumis melo var. makuwa] >TY...	[more]
TYJ97943.1	3.51e-11	33.15	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
KAA0051667.1	3.54e-11	33.15	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
KAA0032272.1	4.98e-07	39.17	uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0036860.1	9.64e-07	36.72	flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYJ95924.1 flocculat...	[more]

BLAST of Chy10G176310 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..173
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..23 score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G176310.1	Chy10G176310.1	mRNA