Chy10G175630 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G175630
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Microtubule-binding protein TANGLED
Location	chrH10: 9093197 .. 9093418 (-)
RNA-Seq Expression	Chy10G175630
Synteny	Chy10G175630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGCAACAATAAGACAACAAACTCCACATAAGTTCTTGATCAAGTCTCCAGTGTCAGCTTCAAAGTTTCAGGTGAAGATTAGCCCAACAGTGATGATCAACCGATCGCCTACGAGACCAGTAGTGATCACAAGATCGCCAACGAGACAGATAAGCTCGAGTAAGTTGTCTCCAAAGAGATCCACTGCTTACAAGCTGCGTCGGTCGTTTTCACCGTAA

mRNA sequence

ATGATCGCAACAATAAGACAACAAACTCCACATAAGTTCTTGATCAAGTCTCCAGTGTCAGCTTCAAAGTTTCAGGTGAAGATTAGCCCAACAGTGATGATCAACCGATCGCCTACGAGACCAGTAGTGATCACAAGATCGCCAACGAGACAGATAAGCTCGAGTAAGTTGTCTCCAAAGAGATCCACTGCTTACAAGCTGCGTCGGTCGTTTTCACCGTAA

Coding sequence (CDS)

ATGATCGCAACAATAAGACAACAAACTCCACATAAGTTCTTGATCAAGTCTCCAGTGTCAGCTTCAAAGTTTCAGGTGAAGATTAGCCCAACAGTGATGATCAACCGATCGCCTACGAGACCAGTAGTGATCACAAGATCGCCAACGAGACAGATAAGCTCGAGTAAGTTGTCTCCAAAGAGATCCACTGCTTACAAGCTGCGTCGGTCGTTTTCACCGTAA

Protein sequence

MIATIRQQTPHKFLIKSPVSASKFQVKISPTVMINRSPTRPVVITRSPTRQISSSKLSPKRSTAYKLRRSFSP*

Homology

[Close]

BLAST of Chy10G175630 vs. ExPASy Swiss-Prot
Match: Q197W8 (Microtubule-binding protein TANGLED OS=Arabidopsis thaliana OX=3702 GN=TAN PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.4e-06
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 7   QQTPHKFLIKS-PVSASKFQVKI--SPTVMI----------------NRSPTRPVVITR- 66
           ++TP+KFLIKS P SASKFQVKI   P V++                +RSPTR V + + 
Sbjct: 275 KETPYKFLIKSPPTSASKFQVKIRSPPKVLVSPTRNGSNSVRKSPRGSRSPTRTVNLGKK 334

Query: 67  ----SPTRQISSSKLSPKRSTAYKLRRSFSP 74
               SP R  ++ K SPK STA KLRRSF+P
Sbjct: 335 SASISPIR--NTGKRSPKLSTAAKLRRSFTP 363

[Close]

BLAST of Chy10G175630 vs. ExPASy Swiss-Prot
Match: Q84M91 (Probable microtubule-binding protein TANGLED OS=Arabidopsis thaliana OX=3702 GN=TAN PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.4e-06
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 7   QQTPHKFLIKS-PVSASKFQVKI--SPTVMI----------------NRSPTRPVVITR- 66
           ++TP+KFLIKS P SASKFQVKI   P V++                +RSPTR V + + 
Sbjct: 275 KETPYKFLIKSPPTSASKFQVKIRSPPKVLVSPTRNGSNSVRKSPRGSRSPTRTVNLGKK 334

Query: 67  ----SPTRQISSSKLSPKRSTAYKLRRSFSP 74
               SP R  ++ K SPK STA KLRRSF+P
Sbjct: 335 SASISPIR--NTGKRSPKLSTAAKLRRSFTP 363

[Close]

BLAST of Chy10G175630 vs. ExPASy TrEMBL
Match: A0A5A7U154 (Microtubule-binding protein TANGLED OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00260 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.5e-20
Identity = 65/94 (69.15%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MIATIRQQTPHKFLIKSPVSASKFQVKISPTVMINRSPTRPVVITRSPTR---------- 60
           +IA  RQQTPHKFLIKSPVSASKFQVKISP V+I RSPTRPVVITRSPTR          
Sbjct: 257 VIAKTRQQTPHKFLIKSPVSASKFQVKISPPVVIKRSPTRPVVITRSPTRPVVITRSPTR 316

Query: 61  -----------QISSSKLSPKRSTAYKLRRSFSP 74
                       ISSSKLSPKRSTA KLRRSFSP
Sbjct: 317 PVVITRSPTRPMISSSKLSPKRSTASKLRRSFSP 350

[Close]

BLAST of Chy10G175630 vs. ExPASy TrEMBL
Match: A0A5D3D444 (Microtubule-binding protein TANGLED OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00190 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.5e-20
Identity = 65/94 (69.15%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MIATIRQQTPHKFLIKSPVSASKFQVKISPTVMINRSPTRPVVITRSPTR---------- 60
           +IA  RQQTPHKFLIKSPVSASKFQVKISP V+I RSPTRPVVITRSPTR          
Sbjct: 268 VIAKTRQQTPHKFLIKSPVSASKFQVKISPPVVIKRSPTRPVVITRSPTRPVVITRSPTR 327

Query: 61  -----------QISSSKLSPKRSTAYKLRRSFSP 74
                       ISSSKLSPKRSTA KLRRSFSP
Sbjct: 328 PVVITRSPTRPMISSSKLSPKRSTASKLRRSFSP 361

[Close]

BLAST of Chy10G175630 vs. ExPASy TrEMBL
Match: A6YTD5 (Microtubule binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 64/94 (68.09%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1   MIATIRQQTPHKFLIKSPVSASKFQVKISPTVMINRSPTRPVVITRSPTR---------- 60
           +IA  RQQTPHKFLIKSPVSASKFQVKISP V+I RSPTRPVVITRSPTR          
Sbjct: 268 VIAKTRQQTPHKFLIKSPVSASKFQVKISPPVVIKRSPTRPVVITRSPTRPVVITRSPTR 327

Query: 61  -----------QISSSKLSPKRSTAYKLRRSFSP 74
                       ISSSKLSPKRSTA KLR SFSP
Sbjct: 328 PVVITRSPTRPMISSSKLSPKRSTASKLRPSFSP 361

[Close]

BLAST of Chy10G175630 vs. ExPASy TrEMBL
Match: A0A1S3BZ63 (microtubule-binding protein TANGLED OS=Cucumis melo OX=3656 GN=LOC103495028 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 64/94 (68.09%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1   MIATIRQQTPHKFLIKSPVSASKFQVKISPTVMINRSPTRPVVITRSPTR---------- 60
           +IA  RQQTPHKFLIKSPVSASKFQVKISP V+I RSPTRPVVITRSPTR          
Sbjct: 268 VIAKTRQQTPHKFLIKSPVSASKFQVKISPPVVIKRSPTRPVVITRSPTRPVVITRSPTR 327

Query: 61  -----------QISSSKLSPKRSTAYKLRRSFSP 74
                       ISSSKLSPKRSTA KLR SFSP
Sbjct: 328 PVVITRSPTRPMISSSKLSPKRSTASKLRPSFSP 361

[Close]

BLAST of Chy10G175630 vs. ExPASy TrEMBL
Match: A0A6J1KAM7 (microtubule-binding protein TANGLED OS=Cucurbita maxima OX=3661 GN=LOC111493748 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12
Identity = 52/74 (70.27%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1   MIATIRQQTPHKFLIKSPVSASKFQVKISPTVMINRSPTRPVVITRSPTRQISSSKLS-P 60
           +I   RQQTPHKFLIKSP SASKFQVKI       RSP  PVVITRSPT+ + SSK S P
Sbjct: 260 VITKTRQQTPHKFLIKSPASASKFQVKI-------RSP--PVVITRSPTKPVLSSKQSPP 319

Query: 61  KRSTAYKLRRSFSP 74
           K STA KLRRSFSP
Sbjct: 320 KGSTASKLRRSFSP 324

[Close]

BLAST of Chy10G175630 vs. NCBI nr
Match: KAA0047966.1 (microtubule-binding protein TANGLED [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 3.77e-26
Identity = 65/94 (69.15%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MIATIRQQTPHKFLIKSPVSASKFQVKISPTVMINRSPTRPVVITRSPTR---------- 60
           +IA  RQQTPHKFLIKSPVSASKFQVKISP V+I RSPTRPVVITRSPTR          
Sbjct: 257 VIAKTRQQTPHKFLIKSPVSASKFQVKISPPVVIKRSPTRPVVITRSPTRPVVITRSPTR 316

Query: 61  -----------QISSSKLSPKRSTAYKLRRSFSP 73
                       ISSSKLSPKRSTA KLRRSFSP
Sbjct: 317 PVVITRSPTRPMISSSKLSPKRSTASKLRRSFSP 350

[Close]

BLAST of Chy10G175630 vs. NCBI nr
Match: TYK18310.1 (microtubule-binding protein TANGLED [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 4.21e-26
Identity = 65/94 (69.15%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MIATIRQQTPHKFLIKSPVSASKFQVKISPTVMINRSPTRPVVITRSPTR---------- 60
           +IA  RQQTPHKFLIKSPVSASKFQVKISP V+I RSPTRPVVITRSPTR          
Sbjct: 268 VIAKTRQQTPHKFLIKSPVSASKFQVKISPPVVIKRSPTRPVVITRSPTRPVVITRSPTR 327

Query: 61  -----------QISSSKLSPKRSTAYKLRRSFSP 73
                       ISSSKLSPKRSTA KLRRSFSP
Sbjct: 328 PVVITRSPTRPMISSSKLSPKRSTASKLRRSFSP 361

[Close]

BLAST of Chy10G175630 vs. NCBI nr
Match: XP_038877022.1 (microtubule-binding protein TANGLED [Benincasa hispida])

HSP 1 Score: 106 bits (265), Expect = 3.17e-25
Identity = 59/74 (79.73%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   MIATIRQQTPHKFLIKSPVSASKFQVKI-SPTVMINRSPTRPVVITRSPTRQISSSKLSP 60
           +I   RQQTPHKFLIKSPVSASKFQVKI SP V+I RSPTRPVVIT SPTRQ+S +K SP
Sbjct: 261 VITKTRQQTPHKFLIKSPVSASKFQVKIKSPPVVITRSPTRPVVITLSPTRQVSLNKQSP 320

Query: 61  KRSTAYKLRRSFSP 73
           KRS A KLRRSFSP
Sbjct: 321 KRSAASKLRRSFSP 334

[Close]

BLAST of Chy10G175630 vs. NCBI nr
Match: XP_008454676.1 (PREDICTED: microtubule-binding protein TANGLED [Cucumis melo] >ABR67412.1 microtubule binding protein [Cucumis melo subsp. melo])

HSP 1 Score: 106 bits (265), Expect = 4.19e-25
Identity = 64/94 (68.09%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1   MIATIRQQTPHKFLIKSPVSASKFQVKISPTVMINRSPTRPVVITRSPTR---------- 60
           +IA  RQQTPHKFLIKSPVSASKFQVKISP V+I RSPTRPVVITRSPTR          
Sbjct: 268 VIAKTRQQTPHKFLIKSPVSASKFQVKISPPVVIKRSPTRPVVITRSPTRPVVITRSPTR 327

Query: 61  -----------QISSSKLSPKRSTAYKLRRSFSP 73
                       ISSSKLSPKRSTA KLR SFSP
Sbjct: 328 PVVITRSPTRPMISSSKLSPKRSTASKLRPSFSP 361

[Close]

BLAST of Chy10G175630 vs. NCBI nr
Match: XP_011648821.1 (microtubule-binding protein TANGLED [Cucumis sativus] >KAE8651599.1 hypothetical protein Csa_023440 [Cucumis sativus])

HSP 1 Score: 105 bits (263), Expect = 7.79e-25
Identity = 65/94 (69.15%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MIATIRQQTPHKFLIKSPVSASKFQVKISPTVMINRSPTRPVVITRSP------------ 60
           +IA  RQQTPHKFLIKSPVSASKFQVKISP V+I RSPTRPVVITRSP            
Sbjct: 264 VIAKTRQQTPHKFLIKSPVSASKFQVKISPPVVIKRSPTRPVVITRSPRRPVVITRSPTR 323

Query: 61  --------TRQISSSKLSPKRSTAY-KLRRSFSP 73
                   TRQISSSKLSPKRST   KLRRSFSP
Sbjct: 324 PVMITRSPTRQISSSKLSPKRSTVVSKLRRSFSP 357

[Close]

BLAST of Chy10G175630 vs. TAIR 10
Match: AT3G05330.1 (cyclin family )

HSP 1 Score: 51.6 bits (122), Expect = 3.1e-07
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 7   QQTPHKFLIKS-PVSASKFQVKI--SPTVMI----------------NRSPTRPVVITR- 66
           ++TP+KFLIKS P SASKFQVKI   P V++                +RSPTR V + + 
Sbjct: 275 KETPYKFLIKSPPTSASKFQVKIRSPPKVLVSPTRNGSNSVRKSPRGSRSPTRTVNLGKK 334

Query: 67  ----SPTRQISSSKLSPKRSTAYKLRRSFSP 74
               SP R  ++ K SPK STA KLRRSF+P
Sbjct: 335 SASISPIR--NTGKRSPKLSTAAKLRRSFTP 363

The following BLAST results are available for this feature:

BLAST of Chy10G175630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q197W8	4.4e-06	47.25	Microtubule-binding protein TANGLED OS=Arabidopsis thaliana OX=3702 GN=TAN PE=1 ...	[more]
Q84M91	4.4e-06	47.25	Probable microtubule-binding protein TANGLED OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Chy10G175630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U154	2.5e-20	69.15	Microtubule-binding protein TANGLED OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3D444	2.5e-20	69.15	Microtubule-binding protein TANGLED OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A6YTD5	1.6e-19	68.09	Microtubule binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BZ63	1.6e-19	68.09	microtubule-binding protein TANGLED OS=Cucumis melo OX=3656 GN=LOC103495028 PE=4...	[more]
A0A6J1KAM7	3.3e-12	70.27	microtubule-binding protein TANGLED OS=Cucurbita maxima OX=3661 GN=LOC111493748 ...	[more]

BLAST of Chy10G175630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047966.1	3.77e-26	69.15	microtubule-binding protein TANGLED [Cucumis melo var. makuwa]	[more]
TYK18310.1	4.21e-26	69.15	microtubule-binding protein TANGLED [Cucumis melo var. makuwa]	[more]
XP_038877022.1	3.17e-25	79.73	microtubule-binding protein TANGLED [Benincasa hispida]	[more]
XP_008454676.1	4.19e-25	68.09	PREDICTED: microtubule-binding protein TANGLED [Cucumis melo] >ABR67412.1 microt...	[more]
XP_011648821.1	7.79e-25	69.15	microtubule-binding protein TANGLED [Cucumis sativus] >KAE8651599.1 hypothetical...	[more]

BLAST of Chy10G175630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05330.1	3.1e-07	47.25	cyclin family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G175630.1	Chy10G175630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000911	cytokinesis by cell plate formation
cellular_component	GO:0005875	microtubule associated complex
cellular_component	GO:0009574	preprophase band