Chy10G174910 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G174910
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH10: 7572273 .. 7572923 (+)
RNA-Seq Expression	Chy10G174910
Synteny	Chy10G174910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATAAGAGAGCACGTGACCTCGTGCCATTGCATGGTGTGCCACGTTCAACGTCCAAACGGTGGTTAGTGGCGGTGCTTGTTTTTCTCTTTAAAGAAATTCCTATAATAATAGATACTCCAAACACCCCTCCCAAAATCTCTCAAACAAGAAGAAAGAAAGCCTATCATTTTATCATTCATACACACACCTCACCACCACACCAAAACAATATGCAACTCTCAGCATCTCTCATATCTCCACCACCTCCTCCCCTCCTCCACCGCCCCTCCACCGCCTTCTTCCCTAACCTCAGGCCAACTCCAGCCCTTTCCTCACCATGGCTCTGCCATCGACCTGCGGAGGCAGGGGCAGAGCCAAGATGTGTTAGTCAGGGTGGATGGGGAAGCTCTGTGGGTGTGGGGGAGGTGGACATAGAAGAGTGGCTGAAGCTAGGGAGATTGGAGGAGAAGTGCGGCGGCGGAGGCAAGGGAATTGTGGAGCTACTTGAATGTTTGGAAAAAGAAGCCATTATGGGAGAAGATGAAGGGAGAGACCCAACAGATTATAATAGAAGAGCTAAGATTTTCAGTACCAGTTCTGAAGTTTTCCAAGCTCTCAAGCAACATTCTGACGCTGTTGCTCCTCCTCCTCCTCACCATTCTTGA

mRNA sequence

ATGATGAATAAGAGAGCACGTGACCTCGTGCCATTGCATGGTGTGCCACGTTCAACGTCCAAACGGTGGCCAACTCCAGCCCTTTCCTCACCATGGCTCTGCCATCGACCTGCGGAGGCAGGGGCAGAGCCAAGATGTGTTAGTCAGGGTGGATGGGGAAGCTCTGTGGGTGTGGGGGAGGTGGACATAGAAGAGTGGCTGAAGCTAGGGAGATTGGAGGAGAAGTGCGGCGGCGGAGGCAAGGGAATTGTGGAGCTACTTGAATGTTTGGAAAAAGAAGCCATTATGGGAGAAGATGAAGGGAGAGACCCAACAGATTATAATAGAAGAGCTAAGATTTTCAGTACCAGTTCTGAAGTTTTCCAAGCTCTCAAGCAACATTCTGACGCTGTTGCTCCTCCTCCTCCTCACCATTCTTGA

Coding sequence (CDS)

ATGATGAATAAGAGAGCACGTGACCTCGTGCCATTGCATGGTGTGCCACGTTCAACGTCCAAACGGTGGCCAACTCCAGCCCTTTCCTCACCATGGCTCTGCCATCGACCTGCGGAGGCAGGGGCAGAGCCAAGATGTGTTAGTCAGGGTGGATGGGGAAGCTCTGTGGGTGTGGGGGAGGTGGACATAGAAGAGTGGCTGAAGCTAGGGAGATTGGAGGAGAAGTGCGGCGGCGGAGGCAAGGGAATTGTGGAGCTACTTGAATGTTTGGAAAAAGAAGCCATTATGGGAGAAGATGAAGGGAGAGACCCAACAGATTATAATAGAAGAGCTAAGATTTTCAGTACCAGTTCTGAAGTTTTCCAAGCTCTCAAGCAACATTCTGACGCTGTTGCTCCTCCTCCTCCTCACCATTCTTGA

Protein sequence

MMNKRARDLVPLHGVPRSTSKRWPTPALSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPPPHHS*

Homology

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BLAST of Chy10G174910 vs. ExPASy TrEMBL
Match: A0A0A0KQQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223100 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.1e-60
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 24  PTPALSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGI 83
           PTP+LSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGI
Sbjct: 29  PTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGI 88

Query: 84  VELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPP--PPHHS 140
           VELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPP  PPHHS
Sbjct: 89  VELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPPSPPHHS 146

[Close]

BLAST of Chy10G174910 vs. ExPASy TrEMBL
Match: A0A1S3C540 (uncharacterized protein LOC103496760 OS=Cucumis melo OX=3656 GN=LOC103496760 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.2e-53
Identity = 124/216 (57.41%), Postives = 127/216 (58.80%), Query Frame = 0


Query: 1   MMNKRARDLVPLHGVPRSTSKRW------------------------------------- 60
           MMNKRARDLVPLHG+PRSTSK W                                     
Sbjct: 1   MMNKRARDLVPLHGLPRSTSKWWLMAVLVFLLKNSYNNTNSKLPLPKSLPTFLKEKGEKT 60

Query: 61  -------------------------------------PTPALSSPWLCHRPAEAGAEPRC 120
                                                 TPALSSPWL HR AEA  EPRC
Sbjct: 61  KRTNTSPPNKHNMQLSASLIIPPPLLRPSTAFFPKLRSTPALSSPWLGHRAAEAVVEPRC 120

Query: 121 VSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTD 140
           VSQGGWG+S  V EVDIEEWLKLGRLEEKCG GGKGIVELLECLEKEAIMGEDEGR+PTD
Sbjct: 121 VSQGGWGTS--VAEVDIEEWLKLGRLEEKCGSGGKGIVELLECLEKEAIMGEDEGREPTD 180

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BLAST of Chy10G174910 vs. ExPASy TrEMBL
Match: A0A5D3DSR0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00240 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 9.8e-50
Identity = 103/118 (87.29%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 25  TPALSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGIV 84
           TPALSSPWL HR AEA  EPRCVSQGGWG+S  V EVDIEEWLKLGRLEEKCG GGKGIV
Sbjct: 27  TPALSSPWLGHRAAEAVVEPRCVSQGGWGTS--VAEVDIEEWLKLGRLEEKCGSGGKGIV 86

Query: 85  ELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVA---PPPPHHS 140
           ELLECLEKEAIMGEDEGR+PTDYNRRAKIFSTSSEVFQALKQH D VA   PPPPHHS
Sbjct: 87  ELLECLEKEAIMGEDEGREPTDYNRRAKIFSTSSEVFQALKQHPDVVAPPPPPPPHHS 142

[Close]

BLAST of Chy10G174910 vs. ExPASy TrEMBL
Match: A0A6J1FW01 (uncharacterized protein LOC111447817 OS=Cucurbita moschata OX=3662 GN=LOC111447817 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 90/113 (79.65%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 24  PTPALSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGI 83
           P  A+S  WLC R   A A PRCVSQGGWG S  V E +IEEWLKLGRLEEKCGGGGKG+
Sbjct: 31  PISAISPSWLCRR--VAAAAPRCVSQGGWGGS--VAEPEIEEWLKLGRLEEKCGGGGKGV 90

Query: 84  VELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPPP 137
           VELLECLE+EAIMGEDEGR+PTDYNRRAKIFSTSSEVFQALKQHSDA   PPP
Sbjct: 91  VELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVFQALKQHSDAAPDPPP 139

[Close]

BLAST of Chy10G174910 vs. ExPASy TrEMBL
Match: A0A6J1JM89 (uncharacterized protein LOC111485933 OS=Cucurbita maxima OX=3661 GN=LOC111485933 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.7e-41
Identity = 89/116 (76.72%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 24  PTPALSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGI 83
           P  A+S PW C R   A A PRCVSQGGWG S  V E +IEEWLKLGRL+EKCGGGGKG+
Sbjct: 31  PISAISPPWFCRR--VAAAAPRCVSQGGWGGS--VAEQEIEEWLKLGRLDEKCGGGGKGV 90

Query: 84  VELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPPPHHS 140
           VELLECLE+EAIMGEDEGR+PTDYNRRAKIFSTSSEVFQALKQHSDA   P PH +
Sbjct: 91  VELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVFQALKQHSDAA--PDPHQA 140

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BLAST of Chy10G174910 vs. NCBI nr
Match: XP_011655051.1 (uncharacterized protein LOC105435471 [Cucumis sativus] >KGN50752.1 hypothetical protein Csa_005822 [Cucumis sativus])

HSP 1 Score: 239 bits (611), Expect = 6.53e-79
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 24  PTPALSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGI 83
           PTP+LSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGI
Sbjct: 29  PTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGI 88

Query: 84  VELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPP--PHHS 139
           VELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPP  PHHS
Sbjct: 89  VELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPPSPPHHS 146

[Close]

BLAST of Chy10G174910 vs. NCBI nr
Match: XP_008456969.1 (PREDICTED: uncharacterized protein LOC103496760 [Cucumis melo])

HSP 1 Score: 216 bits (549), Expect = 1.70e-68
Identity = 124/216 (57.41%), Postives = 127/216 (58.80%), Query Frame = 0


Query: 1   MMNKRARDLVPLHGVPRSTSKRW------------------------------------- 60
           MMNKRARDLVPLHG+PRSTSK W                                     
Sbjct: 1   MMNKRARDLVPLHGLPRSTSKWWLMAVLVFLLKNSYNNTNSKLPLPKSLPTFLKEKGEKT 60

Query: 61  -------------------------------------PTPALSSPWLCHRPAEAGAEPRC 120
                                                 TPALSSPWL HR AEA  EPRC
Sbjct: 61  KRTNTSPPNKHNMQLSASLIIPPPLLRPSTAFFPKLRSTPALSSPWLGHRAAEAVVEPRC 120

Query: 121 VSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTD 139
           VSQGGWG+SV   EVDIEEWLKLGRLEEKCG GGKGIVELLECLEKEAIMGEDEGR+PTD
Sbjct: 121 VSQGGWGTSVA--EVDIEEWLKLGRLEEKCGSGGKGIVELLECLEKEAIMGEDEGREPTD 180

[Close]

BLAST of Chy10G174910 vs. NCBI nr
Match: KAA0067024.1 (uncharacterized protein E6C27_scaffold38G00600 [Cucumis melo var. makuwa] >TYK26260.1 uncharacterized protein E5676_scaffold14G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (524), Expect = 1.04e-65
Identity = 103/118 (87.29%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 25  TPALSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGIV 84
           TPALSSPWL HR AEA  EPRCVSQGGWG+SV   EVDIEEWLKLGRLEEKCG GGKGIV
Sbjct: 27  TPALSSPWLGHRAAEAVVEPRCVSQGGWGTSVA--EVDIEEWLKLGRLEEKCGSGGKGIV 86

Query: 85  ELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPPP---HHS 139
           ELLECLEKEAIMGEDEGR+PTDYNRRAKIFSTSSEVFQALKQH D VAPPPP   HHS
Sbjct: 87  ELLECLEKEAIMGEDEGREPTDYNRRAKIFSTSSEVFQALKQHPDVVAPPPPPPPHHS 142

[Close]

BLAST of Chy10G174910 vs. NCBI nr
Match: XP_038892559.1 (uncharacterized protein LOC120081603 [Benincasa hispida])

HSP 1 Score: 195 bits (496), Expect = 2.03e-61
Identity = 99/120 (82.50%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 24  PTPALSSPWLCHRPAEAGA-EPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKG 83
           PTP +SSPWL HR   AGA EPRCVSQGGWG SV   E+DIEEWLK G+LEEKCGGGGKG
Sbjct: 30  PTPPISSPWLRHR---AGAVEPRCVSQGGWGGSVA--ELDIEEWLKSGKLEEKCGGGGKG 89

Query: 84  IVELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPPP---HHS 139
           +VELLECLEKEAIMGEDEG+DPTDYNRRAKIFSTSS+VFQALKQHSDA APPPP   HHS
Sbjct: 90  VVELLECLEKEAIMGEDEGKDPTDYNRRAKIFSTSSKVFQALKQHSDAAAPPPPPPPHHS 144

[Close]

BLAST of Chy10G174910 vs. NCBI nr
Match: XP_022942933.1 (uncharacterized protein LOC111447817 [Cucurbita moschata] >KAG6600868.1 hypothetical protein SDJN03_06101, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031503.1 hypothetical protein SDJN02_05543, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181 bits (460), Expect = 6.98e-56
Identity = 90/113 (79.65%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 24  PTPALSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGI 83
           P  A+S  WLC R A A   PRCVSQGGWG SV   E +IEEWLKLGRLEEKCGGGGKG+
Sbjct: 31  PISAISPSWLCRRVAAAA--PRCVSQGGWGGSVA--EPEIEEWLKLGRLEEKCGGGGKGV 90

Query: 84  VELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPPP 136
           VELLECLE+EAIMGEDEGR+PTDYNRRAKIFSTSSEVFQALKQHSDA   PPP
Sbjct: 91  VELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVFQALKQHSDAAPDPPP 139

[Close]

BLAST of Chy10G174910 vs. TAIR 10
Match: AT5G05220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 9.1e-16
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 42  AEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGG-GKGIVELLECLEKEAIMGEDE 101
           A  RCV+ G    +  +  +  EE  +L +    CGG   +G+ ELLECLEKEAIMG D+
Sbjct: 45  AAARCVASGS-DYAAAMEPITPEEEEELTQRRGICGGEVNRGVWELLECLEKEAIMGNDD 104

Query: 102 GRDPTDYNRRAKIFSTSSEVFQALKQHSD 130
           GRDP DYNRRAKIF  SS++F+ L +  D
Sbjct: 105 GRDPRDYNRRAKIFDKSSKIFKNLNEQRD 132

The following BLAST results are available for this feature:

BLAST of Chy10G174910 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G174910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQQ4	6.1e-60	97.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223100 PE=4 SV=1	[more]
A0A1S3C540	7.2e-53	57.41	uncharacterized protein LOC103496760 OS=Cucumis melo OX=3656 GN=LOC103496760 PE=...	[more]
A0A5D3DSR0	9.8e-50	87.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1FW01	1.5e-42	79.65	uncharacterized protein LOC111447817 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A6J1JM89	1.7e-41	76.72	uncharacterized protein LOC111485933 OS=Cucurbita maxima OX=3661 GN=LOC111485933...	[more]

BLAST of Chy10G174910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655051.1	6.53e-79	97.46	uncharacterized protein LOC105435471 [Cucumis sativus] >KGN50752.1 hypothetical ...	[more]
XP_008456969.1	1.70e-68	57.41	PREDICTED: uncharacterized protein LOC103496760 [Cucumis melo]	[more]
KAA0067024.1	1.04e-65	87.29	uncharacterized protein E6C27_scaffold38G00600 [Cucumis melo var. makuwa] >TYK26...	[more]
XP_038892559.1	2.03e-61	82.50	uncharacterized protein LOC120081603 [Benincasa hispida]	[more]
XP_022942933.1	6.98e-56	79.65	uncharacterized protein LOC111447817 [Cucurbita moschata] >KAG6600868.1 hypothet...	[more]

BLAST of Chy10G174910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05220.1	9.1e-16	49.44	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37758	OS03G0334300 PROTEIN	coord: 41..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G174910.1	Chy10G174910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast