Chy10G174830 (gene) Cucumber (hystrix) v1

Overview
NameChy10G174830
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH10: 7255998 .. 7256726 (+)
RNA-Seq ExpressionChy10G174830
SyntenyChy10G174830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCATTTGCACTCCTAAGAGACGACAACACTCCCACAACTTGGAGTTGGAGAGGTACGTACAGCAGCATGGGAAGATCCCAATATCAATCAACCCAGAAGTGAATGAGTCGATCTTGCCACATGTTGTTCAGTTCAGCAACAAGATCGATGTGTTAACACAAGATACATTTCAAGTCCGCTTCCATAAGTGGGCTAATGTTACTCCGGAGTACACCGAGGTTGTAAAGGGTCTTCTTTAGGTAAGTTTTTAAATTACCGTACATATATATGTTAAAACTACGTACATAGAAACCTAATTCGTATGTCTTTTCCTTTTGTAGGAATAGTTCTTTCTTGATTTCACAGATCAAACACTTATTCTATTTGTTGAGCATCAAATGCTCACCACGTGGAAAGAGTTCAGGGGAGAGAACAATAGGCATTTCAAGAAGTTCAGCGAGCCTGAACAAGCACGTGCCAACCCACCAAACAGATTGGTGAATCATGTGGAAGATTGGCACTTCCTTTGCGATCACTACTTGAGTCGAAAATTTTAGGTGATTTACACCCTTCTAAGGTTATTTACCGTTAATCCATTTTTGTTGTTTGTATGTAACATTTTGATTGTTTGCATGTAGGTGGAATCAAAAACCAATAAAGTTGTTAGAGCGAAGTAGCCTTCAACCACAGTAACGGGTCTAAGTCATTCCTACAACGACAACATGAGCTCGCTGAGAAGTTGTTTAGA

mRNA sequence

ATCCATTTGCACTCCTAAGAGACGACAACACTCCCACAACTTGGAGTTGGAGAGGTACGTACAGCAGCATGGGAAGATCCCAATATCAATCAACCCAGAAGTGAATGAGTCGATCTTGCCACATGTTGTTCAGTTCAGCAACAAGATCGATGTGTTAACACAAGATACATTTCAAGTCCGCTTCCATAAGTGGGCTAATGTTACTCCGGAGTACACCGAGGTTGTAAAGGGTCTTCTTTAGGAATAGTTCTTTCTTGATTTCACAGATCAAACACTTATTCTATTTGTTGAGCATCAAATGCTCACCACGTGGAAAGAGTTCAGGGGAGAGAACAATAGGCATTTCAAGAAGTTCAGCGAGCCTGAACAAGCACGTGCCAACCCACCAAACAGATTGGTGGAATCAAAAACCAATAAAGTTGTTAGAGCGAAGTAGCCTTCAACCACAGTAACGGGTCTAAGTCATTCCTACAACGACAACATGAGCTCGCTGAGAAGTTGTTTAGA

Coding sequence (CDS)

ATCCATTTGCACTCCTAAGAGACGACAACACTCCCACAACTTGGAGTTGGAGAGGTACGTACAGCAGCATGGGAAGATCCCAATATCAATCAACCCAGAAGTGAATGAGTCGATCTTGCCACATGTTGTTCAGTTCAGCAACAAGATCGATGTGTTAACACAAGATACATTTCAAGTCCGCTTCCATAAGTGGGCTAATGTTACTCCGGAGTACACCGAGGTTGTAAAGGGTCTTCTTTAGGAATAGTTCTTTCTTGATTTCACAGATCAAACACTTATTCTATTTGTTGAGCATCAAATGCTCACCACGTGGAAAGAGTTCAGGGGAGAGAACAATAGGCATTTCAAGAAGTTCAGCGAGCCTGAACAAGCACGTGCCAACCCACCAAACAGATTGGTGGAATCAAAAACCAATAAAGTTGTTAGAGCGAAGTAGCCTTCAACCACAGTAACGGGTCTAAGTCATTCCTACAACGACAACATGAGCTCGCTGAGAAGTTGTTTAGA

Protein sequence

IHLHS*ETTTLPQLGVGEVRTAAWEDPNINQPRSE*VDLATCCSVQQQDRCVNTRYISSPLP*VG*CYSGVHRGCKGSSLGIVLS*FHRSNTYSIC*ASNAHHVERVQGREQ*AFQEVQRA*TSTCQPTKQIGGIKNQ*SC*SEVAFNHSNGSKSFLQRQHELAEKLFR
Homology
[Close]
BLAST of Chy10G174830 vs. ExPASy TrEMBL
Match: A0A5A7UUJ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4837G00010 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 7  ETTTLPQLGVGEVRTAAWEDPNINQPRSE*VDLATCCSVQQQDRCVN 54
          ET+ LP+LGVGE+    WEDPN+++P+SE  +L TCCSVQQ   C+N
Sbjct: 17 ETSALPELGVGEIHIEEWEDPNLHRPKSEEANLVTCCSVQQYHCCIN 63

[Close]
BLAST of Chy10G174830 vs. ExPASy TrEMBL
Match: A0A5D3DTV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00320 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.8e-04
Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = 0 

Query: 2   HLHS*ETTTLPQLGVGEVRTAAWEDPNINQPRSE*VDLATCCSVQQQDRCVNTRYISSPL 61
           H H  ET+ L +L V  +R A  +D  IN+P      LAT CSVQ    CVNT++I    
Sbjct: 167 HSHIEETSALSELRVEAIRIATRKDLYINRPMRGQAHLATYCSVQHSHYCVNTKHIFDHC 226

Query: 62  P*VG 66
           P VG
Sbjct: 227 PQVG 230

[Close]
BLAST of Chy10G174830 vs. NCBI nr
Match: KAA0059573.1 (hypothetical protein E6C27_scaffold4837G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 3.12e-11
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 7  ETTTLPQLGVGEVRTAAWEDPNINQPRSE*VDLATCCSVQQQDRCVN 53
          ET+ LP+LGVGE+    WEDPN+++P+SE  +L TCCSVQQ   C+N
Sbjct: 17 ETSALPELGVGEIHIEEWEDPNLHRPKSEEANLVTCCSVQQYHCCIN 63

[Close]
BLAST of Chy10G174830 vs. NCBI nr
Match: KAA0042170.1 (uncharacterized protein E6C27_scaffold67G006640 [Cucumis melo var. makuwa] >TYK26745.1 uncharacterized protein E5676_scaffold124G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 4.85e-04
Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = 0 

Query: 2   HLHS*ETTTLPQLGVGEVRTAAWEDPNINQPRSE*VDLATCCSVQQQDRCVNTRYISSPL 61
           H H  ET+ L +L V  +R A  +D  IN+P      LAT CSVQ    CVNT++I    
Sbjct: 167 HSHIEETSALSELRVEAIRIATRKDLYINRPMRGQAHLATYCSVQHSHYCVNTKHIFDHC 226

Query: 62  P*VG 65
           P VG
Sbjct: 227 PQVG 230

The following BLAST results are available for this feature:
BLAST of Chy10G174830 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G174830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UUJ52.3e-0857.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DTV59.8e-0443.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Chy10G174830 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059573.13.12e-1157.45hypothetical protein E6C27_scaffold4837G00010 [Cucumis melo var. makuwa][more]
KAA0042170.14.85e-0443.75uncharacterized protein E6C27_scaffold67G006640 [Cucumis melo var. makuwa] >TYK2... [more]
BLAST of Chy10G174830 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G174830.1Chy10G174830.1mRNA