Chy10G174780 (gene) Cucumber (hystrix) v1

Overview
NameChy10G174780
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH10: 7090211 .. 7091151 (-)
RNA-Seq ExpressionChy10G174780
SyntenyChy10G174780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGGCTCTCAAACGGTCAGACCAAAAGTCACGTTGGAATTAGTGGCGCTGAAGCGATTTTCTTCTTTCAAAGCTCCAACAGTATGTTCTGTTCATCACTCCTTCTCCTTTTGCTTTCCTTTTCTTCTGGGTTTATGGGCTTTTGATGTTGCTTCAGTTTTTGACATTCCATTAAACCTCTTCTTGTAATTATCAACTAACTAGGGACTGGGCTTGCTGCTCTTGCAGTTGACTCTTCACATTCCTTTGTTTTTACTCTGTTTTTTGGTTTTGATTGCTCTAGTGGGTTCATATGGAAACTTCAAAATCCTAAAGTTTTCATTTCGGTTTATTGATTTGTGCCACTTGGAGGGGATTTTTCATGTTTTTTTTTTTTTAACTGTGGGTTTCTCTGTGTTTCTTCTGCTCATACCTTTTGTGTCTTTTAATTGTCTTTTCTTCCCAAATTCCCTTCAAAATCCTCAGGTTTTTGTACCCAATGGAGGACATTTATGTTTTCATGTGTGTGCGTTGGGCCTTTTTTCTTCTTCATCATTACATCATGCTATTTTTCTCATTTTCTTGGCGCTTTTGAATTTCTTTTCTTGAATTTTTTCAGTTGGAGTTTGATCTAGGCGAGCACTCAGGTTGGAAACTCGAGCATTCACCTATATTCTGGGGCTGTATGATTGTGTGTCTCTTTCCATTTTCAAAACAAAGGTTTCTTTGGTTTCTTTTCATTGAGTGTTTCTTGTCGAGTAGGTTACTCTTCTTTCTTCATTTCATTTAAATTATCTGCATCTGAATTGTCACTGATTCTAATTCTATCCATGTATTGGTATTTGTTTCTTTTCGTAGGACAACATTCACCCTTGGCAGTTTCATTAACTAGACCTTATTTTCTTCACATTGTCATGGAATGCTCCATTCAAATTGGAACCGCAATACGCATAGGAGCATAG

mRNA sequence

ATCGGCTCTCAAACGGTCAGACCAAAAGTCACGTTGGAATTAGTGGCGCTGAAGCGATTTTCTTCTTTCAAAGCTCCAACATTGGAGTTTGATCTAGGCGAGCACTCAGGTTGGAAACTCGAGCATTCACCTATATTCTGGGGCTGTATGATTGTGTGTCTCTTTCCATTTTCAAAACAAAGGTTTCTTTGGTTTCTTTTCATTGAGTGTTTCTTGTCGAGACAACATTCACCCTTGGCAGTTTCATTAACTAGACCTTATTTTCTTCACATTGTCATGGAATGCTCCATTCAAATTGGAACCGCAATACGCATAGGAGCATAG

Coding sequence (CDS)

ATCGGCTCTCAAACGGTCAGACCAAAAGTCACGTTGGAATTAGTGGCGCTGAAGCGATTTTCTTCTTTCAAAGCTCCAACATTGGAGTTTGATCTAGGCGAGCACTCAGGTTGGAAACTCGAGCATTCACCTATATTCTGGGGCTGTATGATTGTGTGTCTCTTTCCATTTTCAAAACAAAGGTTTCTTTGGTTTCTTTTCATTGAGTGTTTCTTGTCGAGACAACATTCACCCTTGGCAGTTTCATTAACTAGACCTTATTTTCTTCACATTGTCATGGAATGCTCCATTCAAATTGGAACCGCAATACGCATAGGAGCATAG

Protein sequence

IGSQTVRPKVTLELVALKRFSSFKAPTLEFDLGEHSGWKLEHSPIFWGCMIVCLFPFSKQRFLWFLFIECFLSRQHSPLAVSLTRPYFLHIVMECSIQIGTAIRIGA*
Homology
[Close]
BLAST of Chy10G174780 vs. ExPASy TrEMBL
Match: A0A0A0KM74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G234140 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.6e-54
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   IGSQTVRPKVTLELVALKRFSSFKAPTLEFDLGEHSGWKLEHSPIFWGCMIVCLFPFSKQ 60
           +GSQTVRPKVTLEL+ALKRFSSFKAPTLEFDLGEHSGWKLEHSPIFWGC+IVCLFPFSKQ
Sbjct: 1   MGSQTVRPKVTLELLALKRFSSFKAPTLEFDLGEHSGWKLEHSPIFWGCLIVCLFPFSKQ 60

Query: 61  RFLWFLFIECFLSRQHSPLAVSLTRPYFLHIVMECSIQIGTAIRIGA 108
           RFLWFLFIECFLSRQHSPLAVSLTRPYFLHIVMECSIQIGT IRIGA
Sbjct: 61  RFLWFLFIECFLSRQHSPLAVSLTRPYFLHIVMECSIQIGTPIRIGA 107

[Close]
BLAST of Chy10G174780 vs. NCBI nr
Match: KGN50760.1 (hypothetical protein Csa_005864 [Cucumis sativus])

HSP 1 Score: 219 bits (558), Expect = 5.88e-72
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   IGSQTVRPKVTLELVALKRFSSFKAPTLEFDLGEHSGWKLEHSPIFWGCMIVCLFPFSKQ 60
           +GSQTVRPKVTLEL+ALKRFSSFKAPTLEFDLGEHSGWKLEHSPIFWGC+IVCLFPFSKQ
Sbjct: 1   MGSQTVRPKVTLELLALKRFSSFKAPTLEFDLGEHSGWKLEHSPIFWGCLIVCLFPFSKQ 60

Query: 61  RFLWFLFIECFLSRQHSPLAVSLTRPYFLHIVMECSIQIGTAIRIGA 107
           RFLWFLFIECFLSRQHSPLAVSLTRPYFLHIVMECSIQIGT IRIGA
Sbjct: 61  RFLWFLFIECFLSRQHSPLAVSLTRPYFLHIVMECSIQIGTPIRIGA 107

[Close]
BLAST of Chy10G174780 vs. NCBI nr
Match: XP_031740802.1 (RNA-dependent RNA polymerase 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 9.72e-06
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  IGSQTVRPKVTLELVALKRFSSFKAPTL 28
          +GSQTVRPKVTLEL+ALKRFSSFKAPTL
Sbjct: 1  MGSQTVRPKVTLELLALKRFSSFKAPTL 28

The following BLAST results are available for this feature:
BLAST of Chy10G174780 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G174780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM746.6e-5496.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G234140 PE=4 SV=1[more]
BLAST of Chy10G174780 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50760.15.88e-7296.26hypothetical protein Csa_005864 [Cucumis sativus][more]
XP_031740802.19.72e-0692.86RNA-dependent RNA polymerase 1-like isoform X2 [Cucumis sativus][more]
BLAST of Chy10G174780 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G174780.1Chy10G174780.1mRNA