Chy10G173630 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G173630
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chrH10: 4143726 .. 4144142 (+)
RNA-Seq Expression	Chy10G173630
Synteny	Chy10G173630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGATCTACCTATTGTACCTCTACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTTCTATGACATAGACACAGAGCCAAACTGGTTATGGTACTCCAATGATGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCGGCAGGAAATTATGATTCAAGGTCGGTCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACTTGCATGGACACAGACGTGGCCATGGAGAACATAACAAATATATGTATTATGAAGCAGTACTTGTAGAGGTATTAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGAGTCAGAACAACATAGAGTTCAGAGTCGACGACGACAACCA

mRNA sequence

ATGTACGATCTACCTATTGTACCTCTACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTTCTATGACATAGACACAGAGCCAAACTGGTTATGGTACTCCAATGATGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCGGCAGGAAATTATGATTCAAGGTCGGTCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACTTGCATGGACACAGACGTGGCCATGGAGAACATAACAAATATATGTATTATGAAGCAGTACTTGTAGAGGTATTAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGAGTCAGAACAACATAGAGTTCAGAGTCGACGACGACAACCA

Coding sequence (CDS)

ATGTACGATCTACCTATTGTACCTCTACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTTCTATGACATAGACACAGAGCCAAACTGGTTATGGTACTCCAATGATGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCGGCAGGAAATTATGATTCAAGGTCGGTCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACTTGCATGGACACAGACGTGGCCATGGAGAACATAACAAATATATGTATTATGAAGCAGTACTTGTAGAGGTATTAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGAGTCAGAACAACATAGAGTTCAGAGTCGACGACGACAACCA

Protein sequence

MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVGRKL*FKVGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQEPENQEESEQHRVQSRRRQP

Homology

[Close]

BLAST of Chy10G173630 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.6e-50
Identity = 107/140 (76.43%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYC 60
           MYDLPIVP  VHRGRVRVEE ELDEV+HNVEEVP  T TQSQTGYG+PMMMMPTFGAGYC
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 61  DSKVGR-KL*FKVGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQ 120
           DS+V        +GP SSYMDVGPS SY+HGH RG+GEHN+Y+Y+EA   +V DRQEYQQ
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAP-ADVSDRQEYQQ 120

Query: 121 EPENQEESEQHRVQSRRRQP 140
           EPENQE+ EQHRVQSRRRQP
Sbjct: 121 EPENQEDREQHRVQSRRRQP 139

[Close]

BLAST of Chy10G173630 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.6e-50
Identity = 108/140 (77.14%), Postives = 120/140 (85.71%), Query Frame = 0


Query: 1   MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYC 60
           MYDLPIVP PVHRG VRVEEAELD+V+HNVEEVPS T TQSQTGYG+PM MMPTF AGYC
Sbjct: 60  MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 119

Query: 61  DSKVG-RKL*FKVGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQ 120
           D +VG       VGPSSSY+DV PSTSY+HGHRRG+GEHN+Y+Y+EA   +V DRQEYQQ
Sbjct: 120 DFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAP-ADVSDRQEYQQ 179

Query: 121 EPENQEESEQHRVQSRRRQP 140
           EPENQE+ EQHRVQSRRRQP
Sbjct: 180 EPENQEDREQHRVQSRRRQP 198

[Close]

BLAST of Chy10G173630 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.3e-49
Identity = 107/140 (76.43%), Postives = 119/140 (85.00%), Query Frame = 0


Query: 1   MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYC 60
           MYDLPIVP PVHRG VRVEEAELD+V+HNVEEVPS T TQSQTGYG+PM MMPTF AGYC
Sbjct: 72  MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 131

Query: 61  DSKVG-RKL*FKVGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQ 120
           D +VG       VGPSSSY+DV PSTSY+HGH RG+GEHN+Y+Y+EA   +V DRQEYQQ
Sbjct: 132 DFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAP-ADVSDRQEYQQ 191

Query: 121 EPENQEESEQHRVQSRRRQP 140
           EPENQE+ EQHRVQSRRRQP
Sbjct: 192 EPENQEDREQHRVQSRRRQP 210

[Close]

BLAST of Chy10G173630 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 105/140 (75.00%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYC 60
           +YDLPIVP PVHR R RVEEAELDEV+HNVEEVP  T TQSQTGYG+PM MMPTFGAGYC
Sbjct: 350 IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 409

Query: 61  DSKVG-RKL*FKVGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQ 120
           DS+V        VGP SSYMDVGPSTSY++GH RG+GEHN+Y+Y+EA   +V DRQEYQQ
Sbjct: 410 DSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAP-TDVSDRQEYQQ 469

Query: 121 EPENQEESEQHRVQSRRRQP 140
           EP+NQE+ EQHRVQSRRRQP
Sbjct: 470 EPKNQEDREQHRVQSRRRQP 488

[Close]

BLAST of Chy10G173630 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.9e-45
Identity = 98/136 (72.06%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 1   MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYC 60
           MY LPIVP  +HRGRV+VEEAELDEV+HNVEE+   T  Q+QTGYG+PM+MMPTFG GYC
Sbjct: 69  MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128

Query: 61  DSKVGRKL*FK-VGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQ 120
           D +V  +     VGPSSSYMDVGPSTSY+HGHR  +GEHN+Y+Y+EA   EV DRQEYQQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAP-TEVSDRQEYQQ 188

Query: 121 EPENQEESEQHRVQSR 136
           EPENQEE EQHRVQSR
Sbjct: 189 EPENQEELEQHRVQSR 203

[Close]

BLAST of Chy10G173630 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 5.69e-67
Identity = 107/140 (76.43%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYC 60
           MYDLPIVP  VHRGRVRVEE ELDEV+HNVEEVP  T TQSQTGYG+PMMMMPTFGAGYC
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 61  DSKVGRKL*FK-VGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQ 120
           DS+V        +GP SSYMDVGPS SY+HGH RG+GEHN+Y+Y+EA   +V DRQEYQQ
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAP-ADVSDRQEYQQ 120

Query: 121 EPENQEESEQHRVQSRRRQP 139
           EPENQE+ EQHRVQSRRRQP
Sbjct: 121 EPENQEDREQHRVQSRRRQP 139

[Close]

BLAST of Chy10G173630 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 3.88e-66
Identity = 108/140 (77.14%), Postives = 120/140 (85.71%), Query Frame = 0


Query: 1   MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYC 60
           MYDLPIVP PVHRG VRVEEAELD+V+HNVEEVPS T TQSQTGYG+PM MMPTF AGYC
Sbjct: 60  MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 119

Query: 61  DSKVG-RKL*FKVGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQ 120
           D +VG       VGPSSSY+DV PSTSY+HGHRRG+GEHN+Y+Y+EA   +V DRQEYQQ
Sbjct: 120 DFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAP-ADVSDRQEYQQ 179

Query: 121 EPENQEESEQHRVQSRRRQP 139
           EPENQE+ EQHRVQSRRRQP
Sbjct: 180 EPENQEDREQHRVQSRRRQP 198

[Close]

BLAST of Chy10G173630 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (527), Expect = 4.65e-65
Identity = 107/140 (76.43%), Postives = 119/140 (85.00%), Query Frame = 0


Query: 1   MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYC 60
           MYDLPIVP PVHRG VRVEEAELD+V+HNVEEVPS T TQSQTGYG+PM MMPTF AGYC
Sbjct: 72  MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 131

Query: 61  DSKVG-RKL*FKVGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQ 120
           D +VG       VGPSSSY+DV PSTSY+HGH RG+GEHN+Y+Y+EA   +V DRQEYQQ
Sbjct: 132 DFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAP-ADVSDRQEYQQ 191

Query: 121 EPENQEESEQHRVQSRRRQP 139
           EPENQE+ EQHRVQSRRRQP
Sbjct: 192 EPENQEDREQHRVQSRRRQP 210

[Close]

BLAST of Chy10G173630 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (518), Expect = 1.89e-60
Identity = 105/140 (75.00%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYC 60
           +YDLPIVP PVHR R RVEEAELDEV+HNVEEVP  T TQSQTGYG+PM MMPTFGAGYC
Sbjct: 350 IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 409

Query: 61  DSKVG-RKL*FKVGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQ 120
           DS+V        VGP SSYMDVGPSTSY++GH RG+GEHN+Y+Y+EA   +V DRQEYQQ
Sbjct: 410 DSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAP-TDVSDRQEYQQ 469

Query: 121 EPENQEESEQHRVQSRRRQP 139
           EP+NQE+ EQHRVQSRRRQP
Sbjct: 470 EPKNQEDREQHRVQSRRRQP 488

[Close]

BLAST of Chy10G173630 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (490), Expect = 1.10e-59
Identity = 98/136 (72.06%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 1   MYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYC 60
           MY LPIVP  +HRGRV+VEEAELDEV+HNVEE+   T  Q+QTGYG+PM+MMPTFG GYC
Sbjct: 69  MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128

Query: 61  DSKVGRKL*FK-VGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQEYQQ 120
           D +V  +     VGPSSSYMDVGPSTSY+HGHR  +GEHN+Y+Y+EA   EV DRQEYQQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAP-TEVSDRQEYQQ 188

Query: 121 EPENQEESEQHRVQSR 135
           EPENQEE EQHRVQSR
Sbjct: 189 EPENQEELEQHRVQSR 203

The following BLAST results are available for this feature:

BLAST of Chy10G173630 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G173630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXX3	2.6e-50	76.43	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3BSG8	2.6e-50	77.14	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	1.3e-49	76.43	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DJV7	1.4e-48	75.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SLF8	1.9e-45	72.06	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of Chy10G173630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049532.1	5.69e-67	76.43	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK01176.1	3.88e-66	77.14	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	4.65e-65	76.43	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK23842.1	1.89e-60	75.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0025972.1	1.10e-59	72.06	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of Chy10G173630 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G173630.1	Chy10G173630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance