Chy10G173530 (gene) Cucumber (hystrix) v1

Overview
NameChy10G173530
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
LocationchrH10: 4143426 .. 4143873 (+)
RNA-Seq ExpressionChy10G173530
SyntenyChy10G173530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGCAAGAGGAGTTTTGATTAAGCAATTTGATATGAATGTGACTCAAGAATATATCCACTGGTATAATAATATAACGAGACTCTACATCACTCGACCAGGAGTAGCCGTGGGTGATCTGGTTCGTACATATTTAAATATTGAATAATTACTTAAATTATTTACTCAATTAAATATTTCTATTTTTGTTTACAATTTATAGAGATCGAACAACACAAGACTTCGTGATGTTGCAGATGATCCACAAAAAATCCTTGATATATGTAATAATAATGAGAGGTACATGGAGCAGATACATAATATGTACGATCTACCTATTGTACCTCTACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTTCTATGACATAGACACAGAGCCAAACTGGTTATGGTACTCCAATGA

mRNA sequence

AAGGCAAGAGGAGTTTTGATTAAGCAATTTGATATGAATGTGACTCAAGAATATATCCACTGGTATAATAATATAACGAGACTCTACATCACTCGACCAGGAGTAGCCGTGGGTGATCTGAGATCGAACAACACAAGACTTCGTGATGTTGCAGATGATCCACAAAAAATCCTTGATATATGTAATAATAATGAGAGGTACATGGAGCAGATACATAATATGTACGATCTACCTATTGTACCTCTACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTTCTATGACATAGACACAGAGCCAAACTGGTTATGGTACTCCAATGA

Coding sequence (CDS)

AAGGCAAGAGGAGTTTTGATTAAGCAATTTGATATGAATGTGACTCAAGAATATATCCACTGGTATAATAATATAACGAGACTCTACATCACTCGACCAGGAGTAGCCGTGGGTGATCTGAGATCGAACAACACAAGACTTCGTGATGTTGCAGATGATCCACAAAAAATCCTTGATATATGTAATAATAATGAGAGGTACATGGAGCAGATACATAATATGTACGATCTACCTATTGTACCTCTACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTTCTATGACATAGACACAGAGCCAAACTGGTTATGGTACTCCAATGA

Protein sequence

KARGVLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMX
Homology
[Close]
BLAST of Chy10G173530 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 100/119 (84.03%), Postives = 110/119 (92.44%), Query Frame = 0 

Query: 4   GVLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDICNN 63
           GV I+QFD++VTQEYIHWYNNITRLYITRPG AVG LRSNN RLRDVADDPQ++L+ICNN
Sbjct: 103 GVSIQQFDIDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNN 162

Query: 64  NERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPM 123
           N+RYME+IHNMYDL IVP PVHRGRVRVEEAELDEV+HNVEEVP  T TQSQTGYG+PM
Sbjct: 163 NKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPM 221

[Close]
BLAST of Chy10G173530 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.7e-51
Identity = 99/119 (83.19%), Postives = 109/119 (91.60%), Query Frame = 0 

Query: 4   GVLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDICNN 63
           GV I+QFD++VTQEYIHWYNNITRLYITRP  AVG LRSNN RLRDVADDPQ++L+ICNN
Sbjct: 112 GVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNN 171

Query: 64  NERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPM 123
           N+RYME+IHNMYDL IVP PVHRGRVRVEEAELDEV+HNVEEVP  T TQSQTGYG+PM
Sbjct: 172 NKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPM 230

[Close]
BLAST of Chy10G173530 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 96/118 (81.36%), Postives = 105/118 (88.98%), Query Frame = 0 

Query: 5   VLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDICNNN 64
           V I+QFDM+VTQEYIH YNNITRLYITRPG  VG LRSNN RLRDV +DPQ++LDICNNN
Sbjct: 281 VSIQQFDMDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNN 340

Query: 65  ERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPM 123
           ERYME+IHN+YDLPIVP PVHR R RVEEAELDEV+HNVEEVP  T TQSQTGYG+PM
Sbjct: 341 ERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPM 398

[Close]
BLAST of Chy10G173530 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.1e-48
Identity = 98/118 (83.05%), Postives = 106/118 (89.83%), Query Frame = 0 

Query: 5   VLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDICNNN 64
           V I+QFD +VTQEYIHWY+NITRLYITRPG AVG  RSNN RLRDVADD Q+ LDICNNN
Sbjct: 5   VSIQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNN 64

Query: 65  ERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPM 123
           ERYME+IHNMYDLPIVP PVHRG VRVEEAELD+V+HNVEEVPS T TQSQTGYG+PM
Sbjct: 65  ERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPM 120

[Close]
BLAST of Chy10G173530 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 94/121 (77.69%), Postives = 105/121 (86.78%), Query Frame = 0 

Query: 2   ARGVLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDIC 61
           A GV I+QFDM+VTQEYIHWYNNITRLYITR    +G +RSNN RLRDVADDPQ++LDIC
Sbjct: 2   AIGVSIQQFDMDVTQEYIHWYNNITRLYITR----LGAVRSNNARLRDVADDPQQVLDIC 61

Query: 62  NNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTP 121
           NNN RYME+IHNMY++ IVPLPVHR RVRVEEAELDEV+HNVEEVP  T TQSQT YG+ 
Sbjct: 62  NNNLRYMEEIHNMYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGSL 118

Query: 122 M 123
           M
Sbjct: 122 M 118

[Close]
BLAST of Chy10G173530 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (541), Expect = 1.96e-66
Identity = 100/119 (84.03%), Postives = 110/119 (92.44%), Query Frame = 0 

Query: 4   GVLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDICNN 63
           GV I+QFD++VTQEYIHWYNNITRLYITRPG AVG LRSNN RLRDVADDPQ++L+ICNN
Sbjct: 103 GVSIQQFDIDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNN 162

Query: 64  NERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPM 122
           N+RYME+IHNMYDL IVP PVHRGRVRVEEAELDEV+HNVEEVP  T TQSQTGYG+PM
Sbjct: 163 NKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPM 221

[Close]
BLAST of Chy10G173530 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 4.15e-65
Identity = 99/119 (83.19%), Postives = 109/119 (91.60%), Query Frame = 0 

Query: 4   GVLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDICNN 63
           GV I+QFD++VTQEYIHWYNNITRLYITRP  AVG LRSNN RLRDVADDPQ++L+ICNN
Sbjct: 112 GVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNN 171

Query: 64  NERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPM 122
           N+RYME+IHNMYDL IVP PVHRGRVRVEEAELDEV+HNVEEVP  T TQSQTGYG+PM
Sbjct: 172 NKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPM 230

[Close]
BLAST of Chy10G173530 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (509), Expect = 1.32e-62
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = 0 

Query: 2   ARGVLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDIC 61
           A  V I+QFD +VTQEYIHWY+NITRLYITRPG AVG  RSNN RLRDVADD Q+ LDIC
Sbjct: 2   AIRVSIQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDIC 61

Query: 62  NNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTP 121
           NNNERYME+IHNMYDLPIVP PVHRG VRVEEAELD+V+HNVEEVPS T TQSQTGYG+P
Sbjct: 62  NNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSP 120

[Close]
BLAST of Chy10G173530 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (510), Expect = 1.53e-59
Identity = 96/118 (81.36%), Postives = 105/118 (88.98%), Query Frame = 0 

Query: 5   VLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDICNNN 64
           V I+QFDM+VTQEYIH YNNITRLYITRPG  VG LRSNN RLRDV +DPQ++LDICNNN
Sbjct: 281 VSIQQFDMDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNN 340

Query: 65  ERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPM 122
           ERYME+IHN+YDLPIVP PVHR R RVEEAELDEV+HNVEEVP  T TQSQTGYG+PM
Sbjct: 341 ERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPM 398

[Close]
BLAST of Chy10G173530 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (484), Expect = 1.09e-58
Identity = 94/121 (77.69%), Postives = 105/121 (86.78%), Query Frame = 0 

Query: 2   ARGVLIKQFDMNVTQEYIHWYNNITRLYITRPGVAVGDLRSNNTRLRDVADDPQKILDIC 61
           A GV I+QFDM+VTQEYIHWYNNITRLYITR    +G +RSNN RLRDVADDPQ++LDIC
Sbjct: 2   AIGVSIQQFDMDVTQEYIHWYNNITRLYITR----LGAVRSNNARLRDVADDPQQVLDIC 61

Query: 62  NNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTP 121
           NNN RYME+IHNMY++ IVPLPVHR RVRVEEAELDEV+HNVEEVP  T TQSQT YG+ 
Sbjct: 62  NNNLRYMEEIHNMYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGSL 118

The following BLAST results are available for this feature:
BLAST of Chy10G173530 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G173530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CH233.2e-5284.03Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TBF82.7e-5183.19Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3DJV71.2e-4881.36Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7V3422.1e-4883.05Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3C2V91.3e-4577.69Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of Chy10G173530 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11193.11.96e-6684.03mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0038951.14.15e-6583.19mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0062642.11.32e-6281.82mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK23842.11.53e-5981.36serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0040602.11.09e-5877.69mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of Chy10G173530 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G173530.1Chy10G173530.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance
molecular_function GO:0008270 zinc ion binding