Chy10G172530 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G172530
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chrH10: 1536025 .. 1536582 (-)
RNA-Seq Expression	Chy10G172530
Synteny	Chy10G172530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATCGAACAACGCAAGACTTCGTGATGTTGCAGACGATCCACAAAACGTCTTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATACTATGTACGATCTACCTATTGTACCTCCACCAATTCATAGGGGACGTGTCCGAGTGGAAGAAGTTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTCCTATGACACAGACACAGAGCCAAACTGGTTATGGTACTCCAATGATGATGATGCCAACATTTGGATCGGGAGGATATTGTGATTTTGAGGTCGGTACAGAAAATTATGATTCAGGGGTCGGTCTATCGTCTTCATACATGGATGCCAGTCCATCAACTTCTTACATGCATGAACACGAACATGGCCATGGAGAACATAAAAAACATATGTATTATGAAGCACCTGTAGAGGTATTAGATTGACAAGAGTACCAACAAGAACAAGAGAACTAAGAGGAGCCAGAACAACATAGAGTTAAGAGTCGACGATGACAACCAAATTGAAATCGACGATGTTCTGGTTGTGGAATGCATTGA

mRNA sequence

AGATCGAACAACGCAAGACTTCGTGATGTTGCAGACGATCCACAAAACGTCTTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATACTATGTACGATCTACCTATTGTACCTCCACCAATTCATAGGGGACGTGTCCGAGTGGAAGAAGTTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTCCTATGACACAGACACAGAGCCAAACTGGTTATGGGGTCGGTCTATCGTCTTCATACATGGATGCCAGTCCATCAACTTCTTACATGCATGAACACGAACATGGCCATGGAGAACATAAAAAACATATGTATTATGAAGCACCTGTAGAGGTATTAGATTGACAAGAGTACCAACAAGAACAAGAGAACTAAGAGGAGCCAGAACAACATAGAGTTAAGAGTCGACGATGACAACCAAATTGAAATCGACGATGTTCTGGTTGTGGAATGCATTGA

Coding sequence (CDS)

AGATCGAACAACGCAAGACTTCGTGATGTTGCAGACGATCCACAAAACGTCTTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATACTATGTACGATCTACCTATTGTACCTCCACCAATTCATAGGGGACGTGTCCGAGTGGAAGAAGTTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTCCTATGACACAGACACAGAGCCAAACTGGTTATGGGGTCGGTCTATCGTCTTCATACATGGATGCCAGTCCATCAACTTCTTACATGCATGAACACGAACATGGCCATGGAGAACATAAAAAACATATGTATTATGAAGCACCTGTAGAGGTATTAGATTGACAAGAGTACCAACAAGAACAAGAGAACTAAGAGGAGCCAGAACAACATAGAGTTAAGAGTCGACGATGACAACCAAATTGAAATCGACGATGTTCTGGTTGTGGAATGCATTGA

Protein sequence

RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVFHNVEEVPPMTQTQSQTGYGVGLSSSYMDASPSTSYMHEHEHGHGEHKKHMYYEAPVEVLD*QEYQQEQEN*EEPEQHRVKSRR*QPN*NRRCSGCGMH*

Homology

[Close]

BLAST of Chy10G172530 vs. ExPASy TrEMBL
Match: A0A5D3DFZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00610 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.8e-61
Identity = 122/158 (77.22%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVF 60
           RSNNARLRDVADDPQ V DICNNNERYMEEIH +YDLPIVPPPIHRGRVRVEE ELDEV+
Sbjct: 33  RSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVY 92

Query: 61  HNVEEVPPMTQTQSQTGYGVGLSSSYMDASPSTSYMHEHEHGHGEHKKHMYYEAPVEVLD 120
           H V+EV PMTQTQSQTGYGVG SSSYMD  PSTSYMH HE G+ EH +++Y+EAP +V D
Sbjct: 93  HKVKEVHPMTQTQSQTGYGVGPSSSYMDVDPSTSYMHGHERGYEEHNEYLYHEAPADVSD 152

Query: 121 *QEYQQEQEN*EEPEQHRVKSRR*QPN*NRRCSGCGMH 159
            QEYQQE EN E+ EQHRV+SRR QP  NRR  GCG H
Sbjct: 153 RQEYQQEPENQEDREQHRVQSRRRQPAQNRRRPGCGTH 190

[Close]

BLAST of Chy10G172530 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 9.4e-57
Identity = 120/184 (65.22%), Postives = 132/184 (71.74%), Query Frame = 0


Query: 1   RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVF 60
           RSNNARLRDVADD Q   DICNNNERYMEEIH MYDLPIVPPP+HRG VRVEE ELD+V+
Sbjct: 27  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86

Query: 61  HNVEEVPPMTQTQSQTGY--------------------------GVGLSSSYMDASPSTS 120
           HNVEEVP  TQTQSQTGY                          GVG SSSY+D SPSTS
Sbjct: 87  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146

Query: 121 YMHEHEHGHGEHKKHMYYEAPVEVLD*QEYQQEQEN*EEPEQHRVKSRR*QPN*NRRCSG 159
           YMH H  G+GEH +++Y+EAP +V D QEYQQE EN E+ EQHRV+SRR QP  NRRC G
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNRRCPG 206

[Close]

BLAST of Chy10G172530 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.3e-55
Identity = 119/184 (64.67%), Postives = 131/184 (71.20%), Query Frame = 0


Query: 1   RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVF 60
           RSNNARLRDVADD Q   DICNNNERYMEEIH MYDLPIVPPP+HRG VRVEE ELD+V+
Sbjct: 39  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98

Query: 61  HNVEEVPPMTQTQSQTGY--------------------------GVGLSSSYMDASPSTS 120
           HNVEEVP  TQTQSQTGY                          GVG SSSY+D SPSTS
Sbjct: 99  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158

Query: 121 YMHEHEHGHGEHKKHMYYEAPVEVLD*QEYQQEQEN*EEPEQHRVKSRR*QPN*NRRCSG 159
           YMH H  G+GEH +++Y+EAP +V D QEYQQE EN E+ EQHRV+SRR QP  NRR  G
Sbjct: 159 YMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNRRRPG 218

[Close]

BLAST of Chy10G172530 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.9e-55
Identity = 116/184 (63.04%), Postives = 132/184 (71.74%), Query Frame = 0


Query: 1   RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVF 60
           RSNNARLRDV +DPQ V DICNNNERYME+IH +YDLPIVPPP+HR R RVEE ELDEV+
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376

Query: 61  HNVEEVPPMTQTQSQTGYG--------------------------VGLSSSYMDASPSTS 120
           HNVEEVPP TQTQSQTGYG                          VG  SSYMD  PSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436

Query: 121 YMHEHEHGHGEHKKHMYYEAPVEVLD*QEYQQEQEN*EEPEQHRVKSRR*QPN*NRRCSG 159
           YM+ H  G+GEH +++Y+EAP +V D QEYQQE +N E+ EQHRV+SRR QP  NR+CSG
Sbjct: 437 YMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQHRVQSRRRQPARNRQCSG 496

[Close]

BLAST of Chy10G172530 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.7e-48
Identity = 107/168 (63.69%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 1   RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVF 60
           RSNNARLRDVADD Q V DICNNN+R+MEEIH MY LPIVPP IHRGRV+VEE ELDEV+
Sbjct: 36  RSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVY 95

Query: 61  HNVEEVPPMTQTQSQTGY--------------------------GVGLSSSYMDASPSTS 120
           HNVEE+ P TQ Q+QTGY                          GVG SSSYMD  PSTS
Sbjct: 96  HNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTS 155

Query: 121 YMHEHEHGHGEHKKHMYYEAPVEVLD*QEYQQEQEN*EEPEQHRVKSR 143
           YMH H H +GEH +++Y+EAP EV D QEYQQE EN EE EQHRV+SR
Sbjct: 156 YMHGHRHDYGEHNEYLYHEAPTEVSDRQEYQQEPENQEELEQHRVQSR 203

[Close]

BLAST of Chy10G172530 vs. NCBI nr
Match: TYK22189.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 246 bits (628), Expect = 1.58e-80
Identity = 122/158 (77.22%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVF 60
           RSNNARLRDVADDPQ V DICNNNERYMEEIH +YDLPIVPPPIHRGRVRVEE ELDEV+
Sbjct: 33  RSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVY 92

Query: 61  HNVEEVPPMTQTQSQTGYGVGLSSSYMDASPSTSYMHEHEHGHGEHKKHMYYEAPVEVLD 120
           H V+EV PMTQTQSQTGYGVG SSSYMD  PSTSYMH HE G+ EH +++Y+EAP +V D
Sbjct: 93  HKVKEVHPMTQTQSQTGYGVGPSSSYMDVDPSTSYMHGHERGYEEHNEYLYHEAPADVSD 152

Query: 121 *QEYQQEQEN*EEPEQHRVKSRR*QPN*NRRCSGCGMH 158
            QEYQQE EN E+ EQHRV+SRR QP  NRR  GCG H
Sbjct: 153 RQEYQQEPENQEDREQHRVQSRRRQPAQNRRRPGCGTH 190

[Close]

BLAST of Chy10G172530 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 231 bits (589), Expect = 2.63e-74
Identity = 120/184 (65.22%), Postives = 132/184 (71.74%), Query Frame = 0


Query: 1   RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVF 60
           RSNNARLRDVADD Q   DICNNNERYMEEIH MYDLPIVPPP+HRG VRVEE ELD+V+
Sbjct: 27  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86

Query: 61  HNVEEVPPMTQTQSQTGYG--------------------------VGLSSSYMDASPSTS 120
           HNVEEVP  TQTQSQTGYG                          VG SSSY+D SPSTS
Sbjct: 87  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146

Query: 121 YMHEHEHGHGEHKKHMYYEAPVEVLD*QEYQQEQEN*EEPEQHRVKSRR*QPN*NRRCSG 158
           YMH H  G+GEH +++Y+EAP +V D QEYQQE EN E+ EQHRV+SRR QP  NRRC G
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNRRCPG 206

[Close]

BLAST of Chy10G172530 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 226 bits (577), Expect = 2.60e-72
Identity = 119/184 (64.67%), Postives = 131/184 (71.20%), Query Frame = 0


Query: 1   RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVF 60
           RSNNARLRDVADD Q   DICNNNERYMEEIH MYDLPIVPPP+HRG VRVEE ELD+V+
Sbjct: 39  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98

Query: 61  HNVEEVPPMTQTQSQTGYG--------------------------VGLSSSYMDASPSTS 120
           HNVEEVP  TQTQSQTGYG                          VG SSSY+D SPSTS
Sbjct: 99  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158

Query: 121 YMHEHEHGHGEHKKHMYYEAPVEVLD*QEYQQEQEN*EEPEQHRVKSRR*QPN*NRRCSG 158
           YMH H  G+GEH +++Y+EAP +V D QEYQQE EN E+ EQHRV+SRR QP  NRR  G
Sbjct: 159 YMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNRRRPG 218

[Close]

BLAST of Chy10G172530 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 226 bits (575), Expect = 1.37e-68
Identity = 116/184 (63.04%), Postives = 132/184 (71.74%), Query Frame = 0


Query: 1   RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVF 60
           RSNNARLRDV +DPQ V DICNNNERYME+IH +YDLPIVPPP+HR R RVEE ELDEV+
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376

Query: 61  HNVEEVPPMTQTQSQTGYG--------------------------VGLSSSYMDASPSTS 120
           HNVEEVPP TQTQSQTGYG                          VG  SSYMD  PSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436

Query: 121 YMHEHEHGHGEHKKHMYYEAPVEVLD*QEYQQEQEN*EEPEQHRVKSRR*QPN*NRRCSG 158
           YM+ H  G+GEH +++Y+EAP +V D QEYQQE +N E+ EQHRV+SRR QP  NR+CSG
Sbjct: 437 YMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQHRVQSRRRQPARNRQCSG 496

[Close]

BLAST of Chy10G172530 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (515), Expect = 3.83e-63
Identity = 107/168 (63.69%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 1   RSNNARLRDVADDPQNVFDICNNNERYMEEIHTMYDLPIVPPPIHRGRVRVEEVELDEVF 60
           RSNNARLRDVADD Q V DICNNN+R+MEEIH MY LPIVPP IHRGRV+VEE ELDEV+
Sbjct: 36  RSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVY 95

Query: 61  HNVEEVPPMTQTQSQTGYG--------------------------VGLSSSYMDASPSTS 120
           HNVEE+ P TQ Q+QTGYG                          VG SSSYMD  PSTS
Sbjct: 96  HNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTS 155

Query: 121 YMHEHEHGHGEHKKHMYYEAPVEVLD*QEYQQEQEN*EEPEQHRVKSR 142
           YMH H H +GEH +++Y+EAP EV D QEYQQE EN EE EQHRV+SR
Sbjct: 156 YMHGHRHDYGEHNEYLYHEAPTEVSDRQEYQQEPENQEELEQHRVQSR 203

The following BLAST results are available for this feature:

BLAST of Chy10G172530 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G172530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFZ9	2.8e-61	77.22	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3BSG8	9.4e-57	65.22	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	2.3e-55	64.67	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DJV7	3.9e-55	63.04	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SLF8	4.7e-48	63.69	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of Chy10G172530 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22189.1	1.58e-80	77.22	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK01176.1	2.63e-74	65.22	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	2.60e-72	64.67	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK23842.1	1.37e-68	63.04	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0025972.1	3.83e-63	63.69	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of Chy10G172530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G172530.1	Chy10G172530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048507	meristem development