Chy10G172440 (gene) Cucumber (hystrix) v1

Overview
NameChy10G172440
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description50S ribosomal protein L23, chloroplastic
LocationchrH10: 1233933 .. 1234781 (-)
RNA-Seq ExpressionChy10G172440
SyntenyChy10G172440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCTAAGGGTATGTGCGCTTTGTCTTTATTAAAGTATTAGTGTATTATGCCCTTTATTCTCTTAATTTTGCTCACTGCATTTTCATTCTTGTGTTTTAGATGGTACTTTTCGTTTTCTTGTTTTGATGGTAGCTTCCAAGTTCTTGAGATGGTTTAATGGACATTTTCAGTATATAATAAACTACGCTCTCCCTGGATGCTTATGAGGTTTTGCAATGCAGAGTTTATGTTTAATTTGATGGTTTTGCAGCTGACATGACCAAGAAGGCTGATCCCAAAGCTCAAGCCTTGAAAACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACACCCTTGTTTTTATTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAAATGCTGTCAAGAAGATGTATGACATTCAAACCAAGAAAGTCAACACTCTAATCAGGTATGCTGAATGAATTTAGAAGCTACACTTTGCTACCAAAGAATACCATGTCGTTTGTTTTACATGACAAATATTAGTATATACGGTTAAATTACAACTTCACTAAACTACATCGTGATGATGACAAAGTATAATCCTATTTATGTAGACCTGATGGAACAAAGAAGGCCTACGTTAGGTTAACCCCAGACTATGATGCCTTGGACGTGGCAAACAAGATCGGAATTATCTAG

mRNA sequence

ATGGCGCCTAAGGCTGACATGACCAAGAAGGCTGATCCCAAAGCTCAAGCCTTGAAAACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACACCCTTGTTTTTATTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAAATGCTGTCAAGAAGATGTATGACATTCAAACCAAGAAAGTCAACACTCTAATCAGACCTGATGGAACAAAGAAGGCCTACGTTAGGTTAACCCCAGACTATGATGCCTTGGACGTGGCAAACAAGATCGGAATTATCTAG

Coding sequence (CDS)

ATGGCGCCTAAGGCTGACATGACCAAGAAGGCTGATCCCAAAGCTCAAGCCTTGAAAACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACACCCTTGTTTTTATTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAAATGCTGTCAAGAAGATGTATGACATTCAAACCAAGAAAGTCAACACTCTAATCAGACCTGATGGAACAAAGAAGGCCTACGTTAGGTTAACCCCAGACTATGATGCCTTGGACGTGGCAAACAAGATCGGAATTATCTAG

Protein sequence

MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII*
Homology
BLAST of Chy10G172440 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.9e-68
Identity = 140/154 (90.91%), Postives = 146/154 (94.81%), Query Frame = 0

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPT-FKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKK+D KAQALKTAKAVKSG T FKK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTK 120
           IS TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIK+AVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

BLAST of Chy10G172440 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-66
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTF--KKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A + KK D KAQALK AKAVKSG +   KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTK 120
           IS  PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

BLAST of Chy10G172440 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.0e-65
Identity = 136/154 (88.31%), Postives = 142/154 (92.21%), Query Frame = 0

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTF-KKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD +KK+DPKAQA K AKAVKSG T  KK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTK 120
           IS   RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIK+AVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

BLAST of Chy10G172440 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-64
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

BLAST of Chy10G172440 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-64
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 0

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

BLAST of Chy10G172440 vs. ExPASy TrEMBL
Match: A0A0A0KQU4 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G264270 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKKV 120
           VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKKV
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

BLAST of Chy10G172440 vs. ExPASy TrEMBL
Match: A0A6J1JKM4 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487755 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.0e-73
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRP+TLKKDRNPKYPRIS
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPRTLKKDRNPKYPRIS 60

Query: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKKV 120
            TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKKV
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGI+
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGIV 152

BLAST of Chy10G172440 vs. ExPASy TrEMBL
Match: A0A6J1JN21 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487327 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 147/152 (96.71%), Postives = 149/152 (98.03%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD +KKADPKAQALK AKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKKV 120
            TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKKV
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

BLAST of Chy10G172440 vs. ExPASy TrEMBL
Match: A0A6J1E3W3 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430563 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 147/152 (96.71%), Postives = 149/152 (98.03%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD +KKADPKAQALK AKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKKV 120
            TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKKV
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

BLAST of Chy10G172440 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.8e-72
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTF-KKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTF KKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

BLAST of Chy10G172440 vs. NCBI nr
Match: XP_004140408.1 (60S ribosomal protein L23a isoform X1 [Cucumis sativus])

HSP 1 Score: 287 bits (734), Expect = 2.40e-97
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKKV 120
           VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKKV
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

BLAST of Chy10G172440 vs. NCBI nr
Match: XP_022991052.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 281 bits (719), Expect = 4.64e-95
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRP+TLKKDRNPKYPRIS
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPRTLKKDRNPKYPRIS 60

Query: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKKV 120
            TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKKV
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGI+
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGIV 152

BLAST of Chy10G172440 vs. NCBI nr
Match: XP_038876923.1 (60S ribosomal protein L23a [Benincasa hispida])

HSP 1 Score: 281 bits (718), Expect = 6.59e-95
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD TKK DPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKK+RNPKYPRIS
Sbjct: 1   MAPKADNTKKGDPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKERNPKYPRIS 60

Query: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKKV 120
           VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKKV
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           NTLIRPDGTKKAYVRLTPDYDALDVANKIG+I
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGVI 152

BLAST of Chy10G172440 vs. NCBI nr
Match: XP_022922609.1 (60S ribosomal protein L23a-like [Cucurbita moschata] >XP_022990476.1 60S ribosomal protein L23a-like isoform X1 [Cucurbita maxima] >XP_023541243.1 60S ribosomal protein L23a-like [Cucurbita pepo subsp. pepo] >KAG7033024.1 60S ribosomal protein L23a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280 bits (715), Expect = 1.89e-94
Identity = 147/152 (96.71%), Postives = 149/152 (98.03%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD +KKADPKAQALK AKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKKV 120
            TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKKV
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

BLAST of Chy10G172440 vs. NCBI nr
Match: KAG6599854.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279 bits (714), Expect = 2.69e-94
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKA+ TKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKAENTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKKV 120
            TPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKKV
Sbjct: 61  ATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

BLAST of Chy10G172440 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 247.3 bits (630), Expect = 8.0e-66
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

BLAST of Chy10G172440 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 247.3 bits (630), Expect = 8.0e-66
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

BLAST of Chy10G172440 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-65
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 0

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

BLAST of Chy10G172440 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-65
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 0

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

BLAST of Chy10G172440 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-63
Identity = 131/153 (85.62%), Postives = 136/153 (88.89%), Query Frame = 0

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           M+P K D+TKKADPKA+ALK AKAVKSG       KIRT VTFHRPKTL   R PKYP+I
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI-----KIRTKVTFHRPKTLTVPRKPKYPKI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKNAVKKMYDIQTKK 120
           S TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK+AVKKMYDIQTKK
Sbjct: 61  SATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9AT352.9e-6890.9160S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1[more]
O226443.5e-6688.9660S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1[more]
Q077613.0e-6588.3160S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1[more]
Q9M3C31.1e-6487.6660S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... [more]
Q8LD461.5e-6487.6660S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0KQU41.6e-7499.3450S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G264... [more]
A0A6J1JKM49.0e-7396.7150S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1JN212.6e-7296.7150S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1E3W32.6e-7296.7150S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A5D3C5W35.8e-7297.3950S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
XP_004140408.12.40e-9799.3460S ribosomal protein L23a isoform X1 [Cucumis sativus][more]
XP_022991052.14.64e-9596.7160S ribosomal protein L23a [Cucurbita maxima][more]
XP_038876923.16.59e-9596.7160S ribosomal protein L23a [Benincasa hispida][more]
XP_022922609.11.89e-9496.7160S ribosomal protein L23a-like [Cucurbita moschata] >XP_022990476.1 60S ribosom... [more]
KAG6599854.12.69e-9496.7160S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
AT3G55280.18.0e-6687.66ribosomal protein L23AB [more]
AT3G55280.28.0e-6687.66ribosomal protein L23AB [more]
AT2G39460.11.1e-6587.66ribosomal protein L23AA [more]
AT2G39460.21.1e-6587.66ribosomal protein L23AA [more]
AT3G55280.31.3e-6385.62ribosomal protein L23AB [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019985Ribosomal protein L23TIGRFAMTIGR03636TIGR03636coord: 76..152
e-value: 4.2E-29
score: 98.7
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 14..61
e-value: 1.4E-18
score: 66.8
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 72..134
e-value: 3.9E-14
score: 52.7
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 1..152
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 72..152
score: 22.306019
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 33..152
e-value: 6.3E-53
score: 180.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availablePANTHERPTHR11620:SF81RIBOSOMAL PROTEIN L23A, PUTATIVE-RELATEDcoord: 1..152
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 130..145
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 70..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G172440.1Chy10G172440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome