CcUC11G225740 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G225740
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	NAC domain protein
Location	CicolChr11: 30086892 .. 30087188 (+)
RNA-Seq Expression	CcUC11G225740
Synteny	CcUC11G225740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGACAATTTTTCAGTCCCAACCCCAGCCTCGTCGGACTACCTCCGTCGCCGGACGGGAAGCCTGCCGGGGCCGTACCGCTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTTAGAGGTGGCCGGAATTTGATGGGGGTGCCCGGAGATAAGTTCCGCCGGAATCAGGGAAGCAGAGAAGTTTTGAGAAGAGCGTTGATGCCGCCCAGTAGGAGACCCACTCTCCGGTGGATGAATTTCCGGCCAACTCCCAGTCGCCTTTCTAATATGTCTATGGCGGAGACTTAA

mRNA sequence

ATGCCGACAATTTTTCAGTCCCAACCCCAGCCTCGTCGGACTACCTCCGTCGCCGGACGGGAAGCCTGCCGGGGCCGTACCGCTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTTAGAGGTGGCCGGAATTTGATGGGGGTGCCCGGAGATAAGTTCCGCCGGAATCAGGGAAGCAGAGAAGTTTTGAGAAGAGCGTTGATGCCGCCCAGTAGGAGACCCACTCTCCGGTGGATGAATTTCCGGCCAACTCCCAGTCGCCTTTCTAATATGTCTATGGCGGAGACTTAA

Coding sequence (CDS)

ATGCCGACAATTTTTCAGTCCCAACCCCAGCCTCGTCGGACTACCTCCGTCGCCGGACGGGAAGCCTGCCGGGGCCGTACCGCTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTTAGAGGTGGCCGGAATTTGATGGGGGTGCCCGGAGATAAGTTCCGCCGGAATCAGGGAAGCAGAGAAGTTTTGAGAAGAGCGTTGATGCCGCCCAGTAGGAGACCCACTCTCCGGTGGATGAATTTCCGGCCAACTCCCAGTCGCCTTTCTAATATGTCTATGGCGGAGACTTAA

Protein sequence

MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMGVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAET

Homology

[Close]

BLAST of CcUC11G225740 vs. NCBI nr
Match: XP_011652880.1 (uncharacterized protein LOC105435142 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 7.3e-38
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMGVPGDKFRRNQG 60
          MPTIFQSQP PRRT SVAGRE  R R  RSTCRSFSFGGMVRGGRNLM +PGD+ RRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAET 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAE+
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]

BLAST of CcUC11G225740 vs. NCBI nr
Match: KGN60027.2 (hypothetical protein Csa_001878 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 9.5e-38
Identity = 85/97 (87.63%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMGVPGDKFRRNQG 60
          MPTIFQSQP PRRT SVAGRE  R R  RSTCRSFSFGGMVRGGRNLM +PGD+ RRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAE 98
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAE
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97

[Close]

BLAST of CcUC11G225740 vs. NCBI nr
Match: KAA0036871.1 (uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ95931.1 uncharacterized protein E5676_scaffold110G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 3.6e-37
Identity = 84/98 (85.71%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMGVPGDKFRRNQG 60
          MPTIFQSQP PRR+ SVAGREA R R  RSTCRS SFGGMVRGGRNLM +PGD+ RRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAET 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAE+
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]

BLAST of CcUC11G225740 vs. NCBI nr
Match: KAG7024857.1 (hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.1 bits (362), Expect = 6.6e-31
Identity = 77/100 (77.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1  MPTIFQSQPQPRRTTSV---AGREACRGRTARSTCRSFSFGGMVRGGRNLMGVPGDKFRR 60
          MPTIFQSQPQP R  S+   AGRE    R+ RSTCRSFSF GMVR GRN+M   GDKFRR
Sbjct: 1  MPTIFQSQPQPDRRPSLAAAAGREP--SRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFRR 60

Query: 61 NQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAE 98
          NQG REVLRRALMPP+R+PTLRW+NFRPTPSRLSNMSMAE
Sbjct: 61 NQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAE 98

[Close]

BLAST of CcUC11G225740 vs. NCBI nr
Match: KAG6607862.1 (hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037392.1 hypothetical protein SDJN02_01017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-24
Identity = 68/98 (69.39%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1  MPTIFQSQPQPRRTTSVAG--REACRGRTARSTCRSFSFGGMVRGGRNLMGVPGDKFRRN 60
          MPTIFQSQ QP    S AG  RE  R R+ RS CRS SFGG+ RGGRN+    GDK RR 
Sbjct: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAA-GDKLRRL 60

Query: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMA 97
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLSNMSMA
Sbjct: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97

[Close]

BLAST of CcUC11G225740 vs. ExPASy TrEMBL
Match: A0A0A0LD23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMGVPGDKFRRNQG 60
          MPTIFQSQP PRRT SVAGRE  R R  RSTCRSFSFGGMVRGGRNLM +PGD+ RRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAET 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAE+
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]

BLAST of CcUC11G225740 vs. ExPASy TrEMBL
Match: A0A5A7T5L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002460 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 84/98 (85.71%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMGVPGDKFRRNQG 60
          MPTIFQSQP PRR+ SVAGREA R R  RSTCRS SFGGMVRGGRNLM +PGD+ RRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAET 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAE+
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]

BLAST of CcUC11G225740 vs. ExPASy TrEMBL
Match: A0A6N2MHB8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 54/108 (50.00%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   MPTIFQSQ-----PQPRRTTSVAGREACRGRTA-------RSTCRSFSFGGMVRGGRNLM 60
           M TI Q Q     P P R +   G  A R   A       RSTC   +  G VR  ++  
Sbjct: 1   METISQKQTIRRLPIPARQSPGEGIRARRNNQAASISPGPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  GVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMA 97
            VP D+ RR+Q +RE+LRRAL PP+RR TLRW NF+PTPSRLSNMSMA
Sbjct: 61  LVPSDRLRRHQANREILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of CcUC11G225740 vs. ExPASy TrEMBL
Match: A0A6M2EHA0 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 29  RSTCRSFSFGGMVRGGRNLMGVPGDK-FRRNQGSREVLRRALMPPSRRPTLRWMNFRPTP 88
           RSTC   +  G VR  ++   VPGDK  RR+Q ++E+LRRAL PP+RR TLRW NFRPTP
Sbjct: 41  RSTCTCSNRPGSVRCSKHGYMVPGDKLIRRHQANKEILRRALAPPNRRLTLRWFNFRPTP 100

Query: 89  SRLSNMSMA 97
           SRLSNMSMA
Sbjct: 101 SRLSNMSMA 109

[Close]

BLAST of CcUC11G225740 vs. ExPASy TrEMBL
Match: A0A4U5R551 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000006820 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 29  RSTCRSFSFGGMVRGGRNLMGVPGDK-FRRNQGSREVLRRALMPPSRRPTLRWMNFRPTP 88
           RSTC   +  G VR  ++   VPGDK  RR+Q ++E+LRRAL PP+RR TLRW NFRPTP
Sbjct: 41  RSTCTCSNRPGSVRCSKHGYMVPGDKLIRRHQANKEILRRALAPPNRRLTLRWFNFRPTP 100

Query: 89  SRLSNMSMA 97
           SRLSNMSMA
Sbjct: 101 SRLSNMSMA 109

[Close]

BLAST of CcUC11G225740 vs. TAIR 10
Match: AT3G15518.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 39/89 (43.82%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 9   PQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMGVPGDK---FRRNQGSREVL 68
           P    T  +  R    G   R  C      G  +  R+   VP D+    + + GSREVL
Sbjct: 16  PGRSETNRIRRRSHGSGLRVRVACTCSGRPGSTKCARHGFVVPSDERLMRKASDGSREVL 75

Query: 69  RRALMPPSRRPTLRWMNFRPTPSRLSNMS 95
           RRAL PP RR  LRW+NFRPTPSRL  MS
Sbjct: 76  RRALTPPIRRMNLRWLNFRPTPSRLCKMS 104

The following BLAST results are available for this feature:

BLAST of CcUC11G225740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652880.1	7.3e-38	86.73	uncharacterized protein LOC105435142 [Cucumis sativus]	[more]
KGN60027.2	9.5e-38	87.63	hypothetical protein Csa_001878 [Cucumis sativus]	[more]
KAA0036871.1	3.6e-37	85.71	uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAG7024857.1	6.6e-31	77.00	hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607862.1	4.6e-24	69.39	hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC11G225740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC11G225740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD23	3.5e-38	86.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1	[more]
A0A5A7T5L7	1.7e-37	85.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6N2MHB8	1.1e-12	50.00	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=...	[more]
A0A6M2EHA0	3.3e-12	63.77	Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
A0A4U5R551	3.3e-12	63.77	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000006820 PE=4 SV=1	[more]

BLAST of CcUC11G225740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15518.1	1.2e-09	43.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G225740.1	CcUC11G225740.1	mRNA