CcUC11G225130 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G225130
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA exonuclease 4
Location	CicolChr11: 29492236 .. 29496144 (-)
RNA-Seq Expression	CcUC11G225130
Synteny	CcUC11G225130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTCAGCTCAAGAAGACCCCTAAACCCAAATTGCTTAACCCCAATTGGGCGCTACTCCAACAAGTACTGCTTCTTCTTCTTCCCTCCATTCCTCGTTTTTCCCTCTCTTTCTATCACTAATTTCTATCTATTTTGATCCTGCAGAAGCTGAAACCCCATGGTTCGAACCATTCAAGGTCCTCTACTGTTCCGAAATCCGAAGCTTCATCAAAAACCCTTTTAGGTAATAGTTCTTCCACTACCCCTCGGTTCAAAGTTGCTTTCCTGCTTTTGGAGGATGAATGGATTTCGTAGTTTCCCATTTACAGAGCATTATGGAAGTTTATGCTCTTGTATGAGCCTCTCTAATTCAAACGCAGAAAGTGAAAAGTGGGTTTTGCTGCAATCGTCACTTGAAATAGTGTGTGCTTTTGATTTTAGGGACTTTTCTAGTTATTTTATTGGGAAGTTCTTAGTTCACGAAATATTTAGAATAACCAAACAAGCTTTGTTTTGGTTTCATTCTAATGAATCCACGTAGTTTTTGTGGTCATAATGTAGTGATTTAGTTAACTTGTGCGACCAGGTTTTGCAGGGAAACGCAAGGAAAGAGCTGATGTGGAGTCAAATCATTCCCAGAAGAATATTCTCATTCCGGTGAATGATGATTTTAGGTAATCTTTTAGAATTATTTTAAATTACTTGAAGAACGTAGTAAGCTGTTGTCTATTACTTTAGATGCAAATTGAAATATTTATAATTGTATAATCACCAACTATTCGCATGGCATCGGTAAATAAAAGAGAGAGTTAATTATAATTCAATCCTAGACTATCATAAGTAGCAGATTCATGTGACTAAACTGTGCAATAAAATTTTGTATGAACTCAGAACAAAACAAATCAAGTTCTATGTGGCTTCTAATCCCGTAGTATTGGCAAATGCCAAATCTTGAAATACATTATAGTACAACATCCTCTCATAGTTCAAAGATTTAAGTTCTTCACTTCTGACAAAAAAATGCTTGAAGTTACTTGAATCCCTGTTTTTGTTATCTTTGCCAAAAATCGAATTTTATACTACAGATTCCCCCTCAAAAGAAAAAAGCCTCTTATTTCAACTTGCCTGAAGAAACATGTAGAGTAAATAGTTGGGTTCCTTTGGAAGTTTAGCTCAAATGACTACTAACTGACTTCATGCTTTTTTGCCAGTGTTACAGATGAAGTAGCCATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTATTCATTCCTTTTTCAATTTGATAACCTGTTATTCATATCCATGGGTTTGGTTTTTTAGCATACACACCCTCTTTACACCTCCTTCAATCAGGAGAGAGGACGGGTTATTATTATTATTATTATTATTTTGGAGAGGTTGATAGTTCAACTTTCACTTTCATAAGCAGCAGGTTCTTGGAGCACCAAAGAGTGACGTTTACCTTGTCTATATTATTAGTTGCTAACAGTACTGCCAATTAATGGCAGGTAAACAAATGGGGGAATGTTATATATGATGAGTTTGTACGCCCTATAGAGTGCGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGGTGACCTTAGTTTTCCTTTTTTCTTTTAATATGTATATTTTGTTGTTTACTCATATTTCTACAATAATACTCAGCCACCTAACATCTTTACCTAACAAAATGCATTTTAGGGAAAAGATTGGAGTTATATGTTTCCTTGAAGAGTTTTAACGATGTTGAAGACAATAATTTCTAGCTATGTACAATTACACAATTACATCTGCTAGAAAAGTAATGCTATGTACTAACTACTAAGATATAAGTGGAATTTTGAGTAGGTAGATTAATGAAAAGTAAACTTAGGGTGTACTTTGCCACATTCTTTCAACAAGATGGTCTGGGATTTGAATTTTTTAGGTTCCTTGCGCCTGATCAGTCTTTCATCCTCTGATTCCAATTGGGATTTATATTCGTTACGTTACTTCAGGTTTCCTAAATGTCATTGATTTGTTGATAAAATTATTTAATTTCAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGTATCTAGATTAATGTAGTTTATGGTTTGAAGTATAAACCTGAAAAGTTATAGTAAATATATCTATTGATTTGACAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGTAATAATTTTGCTCCCCATTTTACTTTATAACTTCCACCTTTTCACTTCTACTTTGAAATTCATCCATTCTCAAATGTTTGATGAAACAGGGAAGGAAGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGCGTTGAGATCCAAAACGGGGAGCACTGTCCTGTTAGTTCTCTGATCTTTTCAATACTTATATTCTTAGTGTCTTTTGTTGAACTGCTAGAAAAACCGGGGTATTGATCATAAAACGACTTGGGTTGACCTATTGGTCAATAAGGGCCATGAAAAATTAAAGGGGCTTAGATAAAGTGGATTCAAGCCATGATGACCGCCTACTTAGGATTCTATAAGCCATGATGGCCGCCTACTTAGAATTCTATATCCTATGAGTTTTCTTGACAACCAAATGTTATAGAGTTCGACAATTATCCCACGAAACTAATCACTAGTTAAGGTGCAACACAAGCTTGACTCAGACACTCTAATTGAAAAAATGGAAATTGGTACAAGGAATAACTTCAAGTTCCAAAAAAGTTGTAAGGTATACCCACAATATAAAAAAGGGGTTAAATTACACATTTAGTCTATGAACTTTCAGCTCTGGCTATTTGGTTCTTAAATTTTCAAAATGTCCAATAGGTTCTCGAACTTTAAATTTTGTGTCTAATAATTCCTTGAACTTTAAATTGTGTCTAATAAGGTCCTTGATATGTTTGATTTTTTTTTTTATAGAAAATGTAATTGATCTATTATATATATATTTGAAATTTTGTTTAATGGAATGCTAGGATTTCAATTTTTATATTTAGTAGATACATGAATTTTAAAAAATATGTCGAATAGGTCAAAGACTTGTTAGATACAACATTGAAAATTTTATAGATCTACTAGACACAAATTGAAAGTTTAAGAATTTATTACACTTTTTAAACCATAGGAACTTAATCAACATAAAATTCAAAGTTTAAGATTTTGTTAGACGTTTTTTTTAAAGTTCACGGATCTATTTGACATAAAATTGAATGTTCAAGAATTTATTAGACACTTTTGAAAATTCAAGGACCAAAAGACATAAACTTAAAAGTTCAAGGACTAAACTTGTAATTTAACCAAAGAAAACTATACTGCTTCCAATATTTTATGGTAGTTACAACTTACAAAAGTCCTACATTACCACTATGATACTTGATTGCATCCTAAGATTCATGACCACCAAAAGCAAGAACTCCCATCTTCGTGTGAATTCATTACCATGTCTGACCTCATTTTTGCAAATTCTGGGGATCCATATATTGTCCCGGTTTCCTCTATTACTATTAATGCCAACAGCTTTCAATGAATTTTATCCAGATCGTTTTTCTCTAATATTGTTAATATGTTGTCATGGAACATTTTGTCTTGAAAGATTTGTGAAATTTGGGTGAACTTTCTTTTGTAGGTAGAAGATGCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAAAAGAAACGCAGGCCAAGGAAGAAATCCAAGGATGGAAGTGGTTTTGAATGA

mRNA sequence

ATGGAATCTCAGCTCAAGAAGACCCCTAAACCCAAATTGCTTAACCCCAATTGGGCGCTACTCCAACAAAAGCTGAAACCCCATGGTTCGAACCATTCAAGGTCCTCTACTGTTCCGAAATCCGAAGCTTCATCAAAAACCCTTTTAGGGAAACGCAAGGAAAGAGCTGATGTGGAGTCAAATCATTCCCAGAAGAATATTCTCATTCCGGTGAATGATGATTTTAGTGTTACAGATGAAGTAGCCATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATATGATGAGTTTGTACGCCCTATAGAGTGCGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGGAAGGAAGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGCGTTGAGATCCAAAACGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAAAAGAAACGCAGGCCAAGGAAGAAATCCAAGGATGGAAGTGGTTTTGAATGA

Coding sequence (CDS)

ATGGAATCTCAGCTCAAGAAGACCCCTAAACCCAAATTGCTTAACCCCAATTGGGCGCTACTCCAACAAAAGCTGAAACCCCATGGTTCGAACCATTCAAGGTCCTCTACTGTTCCGAAATCCGAAGCTTCATCAAAAACCCTTTTAGGGAAACGCAAGGAAAGAGCTGATGTGGAGTCAAATCATTCCCAGAAGAATATTCTCATTCCGGTGAATGATGATTTTAGTGTTACAGATGAAGTAGCCATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATATGATGAGTTTGTACGCCCTATAGAGTGCGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGGAAGGAAGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTGGCGTTGAGATCCAAAACGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAAAAGAAACGCAGGCCAAGGAAGAAATCCAAGGATGGAAGTGGTTTTGAATGA

Protein sequence

MESQLKKTPKPKLLNPNWALLQQKLKPHGSNHSRSSTVPKSEASSKTLLGKRKERADVESNHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE

Homology

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BLAST of CcUC11G225130 vs. NCBI nr
Match: XP_008463709.1 (PREDICTED: RNA exonuclease 4 [Cucumis melo] >ADN33800.1 RNA exonuclease [Cucumis melo subsp. melo])

HSP 1 Score: 492.3 bits (1266), Expect = 2.7e-135
Identity = 251/265 (94.72%), Postives = 258/265 (97.36%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQKLKPHGSNHSRSSTVPKSEASSKTLLGKRKERADVES 60
           M SQLKK PKPKLLNPNWA+LQQKLKPHGSNHS++STVPKSEASSKTLLGKRKER+DVES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  NHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           NHSQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 CVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
            VVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG KRALRHLAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE KLKLKQKKR+PRKKSKDG GFE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 265

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BLAST of CcUC11G225130 vs. NCBI nr
Match: XP_038897122.1 (RNA exonuclease 4 isoform X3 [Benincasa hispida])

HSP 1 Score: 480.7 bits (1236), Expect = 8.0e-132
Identity = 250/265 (94.34%), Postives = 255/265 (96.23%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQKLKPHGSNHSRSSTVPKSEASSKTLLGKRKERADVES 60
           MESQLKKT KPKLLNPNWALLQQKLKP GSNHSRSSTVPKSEASSKTLLGKRKER+DVES
Sbjct: 1   MESQLKKTSKPKLLNPNWALLQQKLKPLGSNHSRSSTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  NHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           NHSQKNILIPVNDDFS+TD VAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 CVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
            VVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALLLSHPK+DV
Sbjct: 121 RVVDFRTQISGIRPSDLKKAKDFSTVQKRVAELIKGKILVGHALRNDLKALLLSHPKQDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG +RALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
            EIKLKLKQKKR+ RKKSKDG GFE
Sbjct: 241 GEIKLKLKQKKRKRRKKSKDGGGFE 265

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BLAST of CcUC11G225130 vs. NCBI nr
Match: XP_004146040.1 (RNA exonuclease 4 [Cucumis sativus])

HSP 1 Score: 479.2 bits (1232), Expect = 2.3e-131
Identity = 248/265 (93.58%), Postives = 254/265 (95.85%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQKLKPHGSNHSRSSTVPKSEASSKTLLGKRKERADVES 60
           M+SQLKK PKPKLLNPNWALLQQKL PHGSNH  S+TV KSEASSKTLLGKRKER+DVES
Sbjct: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNH--SNTVLKSEASSKTLLGKRKERSDVES 60

Query: 61  NHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           NHSQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 CVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
            VVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG KRALRHLAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE KLKLKQKKR+PRKKSKDG GFE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 263

[Close]

BLAST of CcUC11G225130 vs. NCBI nr
Match: XP_038897121.1 (RNA exonuclease 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 473.8 bits (1218), Expect = 9.8e-130
Identity = 250/272 (91.91%), Postives = 255/272 (93.75%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQ-------KLKPHGSNHSRSSTVPKSEASSKTLLGKRK 60
           MESQLKKT KPKLLNPNWALLQQ       KLKP GSNHSRSSTVPKSEASSKTLLGKRK
Sbjct: 1   MESQLKKTSKPKLLNPNWALLQQVLLVVVVKLKPLGSNHSRSSTVPKSEASSKTLLGKRK 60

Query: 61  ERADVESNHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYD 120
           ER+DVESNHSQKNILIPVNDDFS+TD VAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYD
Sbjct: 61  ERSDVESNHSQKNILIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYD 120

Query: 121 EFVRPIECVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLL 180
           EFVRPIE VVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALLL
Sbjct: 121 EFVRPIERVVDFRTQISGIRPSDLKKAKDFSTVQKRVAELIKGKILVGHALRNDLKALLL 180

Query: 181 SHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRK 240
           SHPK+DVRDTSEYQFFQKEG +RALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRK
Sbjct: 181 SHPKQDVRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRK 240

Query: 241 EWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE 266
           EWEKSVK EIKLKLKQKKR+ RKKSKDG GFE
Sbjct: 241 EWEKSVKGEIKLKLKQKKRKRRKKSKDGGGFE 272

[Close]

BLAST of CcUC11G225130 vs. NCBI nr
Match: XP_038897120.1 (RNA exonuclease 4 isoform X1 [Benincasa hispida])

HSP 1 Score: 473.4 bits (1217), Expect = 1.3e-129
Identity = 250/273 (91.58%), Postives = 255/273 (93.41%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQ--------KLKPHGSNHSRSSTVPKSEASSKTLLGKR 60
           MESQLKKT KPKLLNPNWALLQQ        KLKP GSNHSRSSTVPKSEASSKTLLGKR
Sbjct: 1   MESQLKKTSKPKLLNPNWALLQQVLLVVVVVKLKPLGSNHSRSSTVPKSEASSKTLLGKR 60

Query: 61  KERADVESNHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIY 120
           KER+DVESNHSQKNILIPVNDDFS+TD VAMDCEMVGVGQGNKSALGRVTLVNKWGNVIY
Sbjct: 61  KERSDVESNHSQKNILIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIY 120

Query: 121 DEFVRPIECVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALL 180
           DEFVRPIE VVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGKILVGHALRNDLKALL
Sbjct: 121 DEFVRPIERVVDFRTQISGIRPSDLKKAKDFSTVQKRVAELIKGKILVGHALRNDLKALL 180

Query: 181 LSHPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR 240
           LSHPK+DVRDTSEYQFFQKEG +RALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR
Sbjct: 181 LSHPKQDVRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR 240

Query: 241 KEWEKSVKAEIKLKLKQKKRRPRKKSKDGSGFE 266
           KEWEKSVK EIKLKLKQKKR+ RKKSKDG GFE
Sbjct: 241 KEWEKSVKGEIKLKLKQKKRKRRKKSKDGGGFE 273

[Close]

BLAST of CcUC11G225130 vs. ExPASy Swiss-Prot
Match: Q9GZR2 (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-42
Identity = 83/167 (49.70%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 77  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPC 136
           +T  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 240 LTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 299

Query: 137 DLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFF--QKEG 196
           +LK+ ++   VQK VAE++KG+ILVGHAL NDLK L L HPKK +RDT +Y+ F  Q + 
Sbjct: 300 NLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKS 359

Query: 197 SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 241
            + +LR L+ + LG+++Q  EHC ++DA++AM LY   +KEWE   +
Sbjct: 360 GRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMAR 406

[Close]

BLAST of CcUC11G225130 vs. ExPASy Swiss-Prot
Match: Q6PAQ4 (RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 2.8e-42
Identity = 80/165 (48.48%), Postives = 122/165 (73.94%), Query Frame = 0


Query: 77  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPC 136
           +T  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 250 LTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 309

Query: 137 DLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK--EG 196
           +LK+ ++F  V+K VAE++KG+ILVGHAL NDLK L L HPKK +RDT +++ F+   + 
Sbjct: 310 NLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKS 369

Query: 197 SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS 239
            + +L+ L+ + LG+ +Q  EHC ++DA++AM LY   ++EWE S
Sbjct: 370 GRPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKREWESS 414

[Close]

BLAST of CcUC11G225130 vs. ExPASy Swiss-Prot
Match: Q91560 (RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 2.8e-42
Identity = 88/185 (47.57%), Postives = 132/185 (71.35%), Query Frame = 0


Query: 77  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPC 136
           +T  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 231 LTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPE 290

Query: 137 DLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK--EG 196
           D+KK + F  VQK V+E+++G+ LVGHA+ NDLK L L HPKK +RDT +Y+ F++  + 
Sbjct: 291 DVKKGEPFKVVQKEVSEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKS 350

Query: 197 SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIK--LKLKQKK 256
            + +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++KA+    + + +K 
Sbjct: 351 GRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKSWEVAIKAKYTGVMPVDRKS 410

[Close]

BLAST of CcUC11G225130 vs. ExPASy Swiss-Prot
Match: Q6DEW6 (RNA exonuclease 4 OS=Xenopus tropicalis OX=8364 GN=rexo4 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-41
Identity = 88/183 (48.09%), Postives = 127/183 (69.40%), Query Frame = 0


Query: 77  VTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPC 136
           +T  VAMDCEMVGVG  G +S L RV++VN +G  +YD++VRP E V D+RT +SGIRP 
Sbjct: 225 LTRTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPD 284

Query: 137 DLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK--EG 196
           D+K  + F  VQ  VAE+++G+ LVGHA+ NDLK L L HPKK +RDT +Y+ F++  + 
Sbjct: 285 DIKNGEAFKDVQAEVAEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKS 344

Query: 197 SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRR 256
            + +L+ L  + L V++Q GEHC V+DA++AM LY  ++K WE ++KA+       K + 
Sbjct: 345 GRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKCWEAAIKAKYAGVTAAKAKG 404

[Close]

BLAST of CcUC11G225130 vs. ExPASy Swiss-Prot
Match: Q08237 (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REX4 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.7e-40
Identity = 84/161 (52.17%), Postives = 121/161 (75.16%), Query Frame = 0


Query: 81  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPCDLKK 140
           +AMDCE VGVG +G +SAL R+++VN +G+V+ DEFV+P E VV++RT +SGI+P  +K 
Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKN 181

Query: 141 AKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK---EGSKR 200
           A  F   QK+ A++++G+ILVGHAL++DL+AL+LSHPK  +RDTS +  F+K   +G   
Sbjct: 182 AITFKEAQKKTADILEGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTP 241

Query: 201 ALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK 238
           +L+ L  E L + IQ GEH  VEDAR+ MLLY+K++ E+EK
Sbjct: 242 SLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKTEFEK 282

[Close]

BLAST of CcUC11G225130 vs. ExPASy TrEMBL
Match: E5GBF8 (RNA exonuclease 4 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.3e-135
Identity = 251/265 (94.72%), Postives = 258/265 (97.36%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQKLKPHGSNHSRSSTVPKSEASSKTLLGKRKERADVES 60
           M SQLKK PKPKLLNPNWA+LQQKLKPHGSNHS++STVPKSEASSKTLLGKRKER+DVES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  NHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           NHSQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 CVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
            VVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG KRALRHLAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE KLKLKQKKR+PRKKSKDG GFE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 265

[Close]

BLAST of CcUC11G225130 vs. ExPASy TrEMBL
Match: A0A1S3CJW0 (RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103501792 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.3e-135
Identity = 251/265 (94.72%), Postives = 258/265 (97.36%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQKLKPHGSNHSRSSTVPKSEASSKTLLGKRKERADVES 60
           M SQLKK PKPKLLNPNWA+LQQKLKPHGSNHS++STVPKSEASSKTLLGKRKER+DVES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  NHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           NHSQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 CVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
            VVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG KRALRHLAAEFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE KLKLKQKKR+PRKKSKDG GFE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 265

[Close]

BLAST of CcUC11G225130 vs. ExPASy TrEMBL
Match: A0A0A0KZK3 (RNA exonuclease 4 OS=Cucumis sativus OX=3659 GN=Csa_4G628920 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 248/265 (93.58%), Postives = 254/265 (95.85%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQKLKPHGSNHSRSSTVPKSEASSKTLLGKRKERADVES 60
           M+SQLKK PKPKLLNPNWALLQQKL PHGSNH  S+TV KSEASSKTLLGKRKER+DVES
Sbjct: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNH--SNTVLKSEASSKTLLGKRKERSDVES 60

Query: 61  NHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           NHSQKNILIPVNDDFS+TDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 CVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
            VVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEG KRALRHLAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE KLKLKQKKR+PRKKSKDG GFE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 263

[Close]

BLAST of CcUC11G225130 vs. ExPASy TrEMBL
Match: A0A6J1FBB2 (RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111442550 PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 2.3e-124
Identity = 234/265 (88.30%), Postives = 249/265 (93.96%), Query Frame = 0


Query: 1   MESQLKKTPKPKLLNPNWALLQQKLKPHGSNHSRSSTVPKSEASSKTLLGKRKERADVES 60
           MESQLKK+ KPKLLNPNWALLQQKL PHGS   RSS+VPKSEASSKTLLGKRK+R+D ES
Sbjct: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGS--KRSSSVPKSEASSKTLLGKRKDRSDEES 60

Query: 61  NHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           +HS K +LIPVNDDFS+TD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIE
Sbjct: 61  DHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIE 120

Query: 121 CVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDV 180
            VVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPKKDV
Sbjct: 121 RVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDV 180

Query: 181 RDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQ+ G +RALRHLAAE LGVEIQNGEHCPVEDARSAMLLYQKK KEWEKSVK
Sbjct: 181 RDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVK 240

Query: 241 AEIKLKLKQKKRRPRKKSKDGSGFE 266
           AE+KLKLKQKKR+PRKKSKDG G E
Sbjct: 241 AEVKLKLKQKKRKPRKKSKDGGGVE 263

[Close]

BLAST of CcUC11G225130 vs. ExPASy TrEMBL
Match: A0A5A7VEJ2 (RNA exonuclease 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001270 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.1e-123
Identity = 231/242 (95.45%), Postives = 237/242 (97.93%), Query Frame = 0


Query: 24  KLKPHGSNHSRSSTVPKSEASSKTLLGKRKERADVESNHSQKNILIPVNDDFSVTDEVAM 83
           KLKPHGSNHS++STVPKSEASSKTLLGKRKER+DVESNHSQKNILIPVNDDFS+TDEVAM
Sbjct: 6   KLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAM 65

Query: 84  DCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPCDLKKAKDF 143
           DCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE VVDFRTQISGIRPCDLKKAKDF
Sbjct: 66  DCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDF 125

Query: 144 PTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGSKRALRHLAA 203
           PTVQKRVAELIKGKILVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEG KRALRHLAA
Sbjct: 126 PTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLAA 185

Query: 204 EFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRRPRKKSKDGSG 263
           EFLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE KLKLKQKKR+PRKKSKDG G
Sbjct: 186 EFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGG 245

Query: 264 FE 266
           FE
Sbjct: 246 FE 247

[Close]

BLAST of CcUC11G225130 vs. TAIR 10
Match: AT3G15080.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 341.7 bits (875), Expect = 5.4e-94
Identity = 179/268 (66.79%), Postives = 216/268 (80.60%), Query Frame = 0


Query: 1   MESQLKK------TPKPKLLNPNWALLQQKLKPHGSNHSRSSTVPKSEASSKTLLGKRKE 60
           M S LK+      TPKP  LNPNW+LLQQKLK     ++R S+ P++ +S   +LGKRKE
Sbjct: 1   MSSDLKRKPKKKITPKPVQLNPNWSLLQQKLKSDSHGNTRKSSNPENPSS---ILGKRKE 60

Query: 61  RADVESNHSQKNILIPVNDDFSVTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDE 120
           R D E +  + N L PVNDD S+TDEVAMDCEMVGV QG KSALGRVTLVNKWGNV+YDE
Sbjct: 61  RPDSEVDVPKINPLAPVNDDSSLTDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDE 120

Query: 121 FVRPIECVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLS 180
           FVRP+E VVDFRT ISGIRP DL+KAKDF   Q +VAELIKGKILVGHAL NDLKALLL+
Sbjct: 121 FVRPVEHVVDFRTSISGIRPRDLRKAKDFRVAQTKVAELIKGKILVGHALHNDLKALLLT 180

Query: 181 HPKKDVRDTSEYQFFQKEGSKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKE 240
           HPKKD+RDT EYQ F K  ++++L+HLA+E LG +IQNGEHCP++DAR+AM+LYQK RKE
Sbjct: 181 HPKKDIRDTGEYQPFLKGKTRKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKE 240

Query: 241 WEKSVKAEIKLKLKQKKRRPRKKSKDGS 263
           WEK+VK + ++ LKQKKR+P+KK+K G+
Sbjct: 241 WEKTVKDQTRMWLKQKKRKPKKKAKYGN 265

[Close]

BLAST of CcUC11G225130 vs. TAIR 10
Match: AT2G48100.1 (Exonuclease family protein )

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-19
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 81  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPCDLKK 140
           +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 141 AKDFPTVQKRVAELIKG--------KILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK 200
                 V++RV   + G         +LVGH LR+D+  L L +P   +RDT++Y    K
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 201 EG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE 243
                ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVCSGKAE 305

[Close]

BLAST of CcUC11G225130 vs. TAIR 10
Match: AT2G48100.2 (Exonuclease family protein )

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-19
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 81  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPCDLKK 140
           +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 141 AKDFPTVQKRVAELIKG--------KILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK 200
                 V++RV   + G         +LVGH LR+D+  L L +P   +RDT++Y    K
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 201 EG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE 243
                ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVCSGKAE 305

[Close]

BLAST of CcUC11G225130 vs. TAIR 10
Match: AT2G48100.3 (Exonuclease family protein )

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-19
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 81  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPCDLKK 140
           +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 141 AKDFPTVQKRVAELIKG--------KILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQK 200
                 V++RV   + G         +LVGH LR+D+  L L +P   +RDT++Y    K
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 201 EG-SKRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE 243
                ++L++L   +LG +IQ G+H   ED  SAM LY++ R +E   S KAE
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVCSGKAE 305

[Close]

BLAST of CcUC11G225130 vs. TAIR 10
Match: AT3G27970.1 (Exonuclease family protein )

HSP 1 Score: 92.8 bits (229), Expect = 4.4e-19
Identity = 56/173 (32.37%), Postives = 89/173 (51.45%), Query Frame = 0


Query: 81  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIECVVDFRTQISGIRPCDLKK 140
           VA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R + +GIRP +L+ 
Sbjct: 136 VALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRPENLRD 195

Query: 141 AKDFPTVQKRVAELI--------------KGKILVGHALRNDLKALLLSHPKKDVRDTSE 200
           A     VQ+++ E +              K +ILVGH L +DL  L L +P   +RDT++
Sbjct: 196 AMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIRDTAK 255

Query: 201 YQFFQKEGS-KRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK 238
           Y    K      +L++L   +LG ++  G   P ED  + M LY + R +  K
Sbjct: 256 YPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTRMRYQKHK 308

The following BLAST results are available for this feature:

BLAST of CcUC11G225130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463709.1	2.7e-135	94.72	PREDICTED: RNA exonuclease 4 [Cucumis melo] >ADN33800.1 RNA exonuclease [Cucumis...	[more]
XP_038897122.1	8.0e-132	94.34	RNA exonuclease 4 isoform X3 [Benincasa hispida]	[more]
XP_004146040.1	2.3e-131	93.58	RNA exonuclease 4 [Cucumis sativus]	[more]
XP_038897121.1	9.8e-130	91.91	RNA exonuclease 4 isoform X2 [Benincasa hispida]	[more]
XP_038897120.1	1.3e-129	91.58	RNA exonuclease 4 isoform X1 [Benincasa hispida]	[more]

BLAST of CcUC11G225130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9GZR2	1.6e-42	49.70	RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2	[more]
Q6PAQ4	2.8e-42	48.48	RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2	[more]
Q91560	2.8e-42	47.57	RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2	[more]
Q6DEW6	1.8e-41	48.09	RNA exonuclease 4 OS=Xenopus tropicalis OX=8364 GN=rexo4 PE=2 SV=1	[more]
Q08237	5.7e-40	52.17	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55...	[more]

BLAST of CcUC11G225130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBF8	1.3e-135	94.72	RNA exonuclease 4 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3CJW0	1.3e-135	94.72	RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103501792 PE=3 SV=1	[more]
A0A0A0KZK3	1.1e-131	93.58	RNA exonuclease 4 OS=Cucumis sativus OX=3659 GN=Csa_4G628920 PE=3 SV=1	[more]
A0A6J1FBB2	2.3e-124	88.30	RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111442550 PE=3 SV=1	[more]
A0A5A7VEJ2	1.1e-123	95.45	RNA exonuclease 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00...	[more]

BLAST of CcUC11G225130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15080.1	5.4e-94	66.79	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G48100.1	3.4e-19	37.57	Exonuclease family protein	[more]
AT2G48100.2	3.4e-19	37.57	Exonuclease family protein	[more]
AT2G48100.3	3.4e-19	37.57	Exonuclease family protein	[more]
AT3G27970.1	4.4e-19	32.37	Exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 79..237 e-value: 4.5E-38 score: 142.5
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 81..228 e-value: 1.2E-13 score: 51.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 77..255 e-value: 7.9E-56 score: 190.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..44
None	No IPR available	PANTHER	PTHR12801:SF135	RNA EXONUCLEASE 4	coord: 42..255
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 42..255
IPR037431	RNA exonuclease 4, DEDDh 3'-5' exonuclease domain	CDD	cd06144	REX4_like	coord: 81..229 e-value: 3.64235E-91 score: 264.378
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 81..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G225130.1	CcUC11G225130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity