CcUC11G224640 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G224640
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L13
Location	CicolChr11: 29059922 .. 29063440 (+)
RNA-Seq Expression	CcUC11G224640
Synteny	CcUC11G224640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTTCCCCGGTTTCCCATTTCTCATCTTCGTATTCACGGAGACAAGAATCTTATCCACTATCCATAGCAGAAATTCCTCAACTGAAACACCGCCAGAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACAATCCACTCTTACCAATGGAAGCACAAGTACCAGAAGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTTTAACCCAGACCACGATTTCTCTAAACTCCAGCCCCAAAAGTTCGGCACTTCAAGTGCGAGCTCAGGAGCTGGATCGCGTCCCTTTGGAACAGCGGTGGATGTTCGAAGGCGACGAGCTCGACGGCCCTGTACGTCTCTAAATCTTTCATTGTGTTTGTTCGTTTGCGCTAAATCTGGTATTGGAAATCGTCTTGTGGATTTGAGACTAATTCAACTCCTTCTTCATATAAGACCTAAAACGTCTATTGAATTTTGTTATCCCCAACTTTCTATGAGCCCTCAATCATTTGTGTTCTTTTAGTTGGGTTGTTGTTTTGTTGTTTCTTTGGGGGCTATTACTTCTAACTTCTGGCTTCTCCACATTGCAATCTCACTTTCCATAACGTACTGAAGTTAATTCATACAGAAAACCATAAAAAAGAAAAAAAAAGAAAAAAAGGAAGAAAAAAAACTCGGTACACCTATAATTGCGGTTATAACTGAACATACAAACCTCGTTCTGCTTGTCAGTTGGTAGGCCAATTTGATGCCCATTTTCTGAATTTTGAAGAATTATTTCCCGTTTTTGCTTGTTTATTTTCCCTTTTCAGATTGGATACTTAGCAGTCGTAATTCTTTTCCATTCAGGACATTTGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGGCTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCTAGTGTGGATATGGGAGCTTTTGTGATTGTGGTATGTGGTTGTACTTGTACATGATGTTTTATTGTGACTTTCATTCTAAAAAAAATCTATTGTGGCTGCAATCACTAGAACATTGATTGCGCTTTTGTCTACGCACCTTGAATTTTCTTGCAATTTGTTTTCATTCAGTTGCTTATTCACTGTCACCCATGAATTATACTTATTCTCTTGATGCTACCTAGGTAAATGCAGAAAAAGTTGCGGTGTCTGGCAAAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACGGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGGTAAGTGATTCCTACTACTTAAGTGCCATATTGTGTTATATGCATGCAGACTATTCTGCAAACTGAATATTTGTGGGTGATAGAGTGATTCTGTAAGTTTTGAGCAACACTCCATTTAGGAAACTGTGTCAAAAGATTATGCGGAAAGTATATTGTCTACTCTATTTGGTTGATCAGTTTTTTTAGAAGCTTTAGTAGGTCGGTTAAGATAGCTTTTGGTGTTTTGATTGTTGTTAGACTATTAGTTAGCTATGTTCCATCTTACAGAAGAGTAACTCAAACTTATCACCAATGGGGTTTTCCAGCTTCAGATTCATATGTAACTTGTTCCAATGGTTCTCACATTCTGCAACATAGGATTCTAGAAGCAATGAGTTGGTGTATATGACAAATCATCGCGTCTTTCAGTTTATTAGAACTAGAAGAATATCCAATGACAAGAAAATAAAATTTCTGGTGGCCTTGTCTTCAAGAGGCTTTCACAACCTGCATTGGAATTTGTAGGTTAATGGTGTGGAGGATGTGGCAAGAATGAGTTACTTGGGAAAGTTTGAAGTGTTTGAGAAACTAACATATGGTTTTTTGTTTATTCCTTGGCTACTCTACTGGCATTCTGTTGGTTACATTTAATAGTAAAAATCTTTGACCAATGGTCAAACTGTCACTACCAGAATCCAAGATCTGTATGGTTGATGGAGCCTGACAACTGTATGTAGGGTGATTTCTTGGCAATTCAGGACCAGGAAAGCTAAAAAATTTGCTTTAGCTGTATATTTTGAAATATTTTGGTTGTCTTTTGAACTACAATCATTCATTTGAAAATTTCATGCCTTCAGAATACCTACTTAACTAGTATATGTTGAACCACCATTTAGCGGGTCTGCTAGGACTTGGGTCTCTTTCTTAGGCGGGACATCAAGTACATTTATCTTTACTGATTAACCAATTTCTAAATGTTGGAGTAGATCCTAAAGAGGTTCCACTTCCTCATGAATTTATCTTGAATCGGAATCTTTTGGCGCTCATGAATTTATCTTGAATCGGAATCTTTTGGCGCGACTTTTTGCTGAGGGTGCAATCCCATTTTTCACTTTGAATTGGTCAAAATATGCAGAATTTCTTACTTTTTGCGGAGGACTAGATCCAGTAACCCAGGTTCCATGGTTAACCCAAGTTCTATGGTTAACTGATATTGCACCCCATCATTTAGCTATTGCAATTCTTTTCCTAATAGCAGGTCACATGTTTAGGACCATTTGGGGCATTTGTCAAGGTATAAAAGATATTTTAGAGGTATGATCTTAAGTTTAGCCCTCTAACAAGGACGCAGTAAAATCTACAATAGGAAAAGGAACAACTTTTCATCTGTGTTGCATCTACACAATATTCTTTTCTTTTGAATCTATTTTATAAAGAATATTAAACAGTCCTACATCATCTACATCATCCTTTGAAGAATTCTTTTATGACAAATTGATAGTTGTTTATGATGTGGTGCATTCTGACGTTGGAACTTCCCGCCGTTGTCAGTGCTTTGACACGACGTGGATGGAACTTTTCTTTAGATTTTTCTCAAGTAGCTGGGAAGTATTTGCCTTGCATAACAAGGCGCCTTGCTTGAAATACTGTTAACTGTCTCACCTTTTATTTCATGCAAACTGCTTCACATTGTGATGTTTAAGAATTTCCATGTTTCCTGCCTCCATTGATGTTCCTGATATTTTATTGGCTGCTTCAAACCATGACAATTTATGTGCAGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGATCATCCACACGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTATGAACTACTAAGAGAAACAAACGACGAAGAGAGAAAGCTCTCTTGTCTGAGGTTTCTAATGTCCATAGAATCGAGTTAGAGTTTTCATGCTTCAACTCAAATTGATATCAGTATTTGATCTGTAATTTGATTCCAAATTCTAGTCTCCTCTCATAACATCTTAGCCCTATGTGACATTTTCAAAGTTATTAATTCAAAAGAGGAATTCTAATATTGC

mRNA sequence

CCGTTCCCCGGTTTCCCATTTCTCATCTTCGTATTCACGGAGACAAGAATCTTATCCACTATCCATAGCAGAAATTCCTCAACTGAAACACCGCCAGAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACAATCCACTCTTACCAATGGAAGCACAAGTACCAGAAGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTTTAACCCAGACCACGATTTCTCTAAACTCCAGCCCCAAAAGTTCGGCACTTCAAGTGCGAGCTCAGGAGCTGGATCGCGTCCCTTTGGAACAGCGGTGGATGTTCGAAGGCGACGAGCTCGACGGCCCTGACATTTGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGGCTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCTAGTGTGGATATGGGAGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGCAAAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACGGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGATCATCCACACGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTATGAACTACTAAGAGAAACAAACGACGAAGAGAGAAAGCTCTCTTGTCTGAGGTTTCTAATGTCCATAGAATCGAGTTAGAGTTTTCATGCTTCAACTCAAATTGATATCAGTATTTGATCTGTAATTTGATTCCAAATTCTAGTCTCCTCTCATAACATCTTAGCCCTATGTGACATTTTCAAAGTTATTAATTCAAAAGAGGAATTCTAATATTGC

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACAATCCACTCTTACCAATGGAAGCACAAGTACCAGAAGCATTCCCAGAAAGTCACTCCTTGCTGGGTTTCCACTCCCACATTCAAAATCTTCTTTTCTTTTAACCCAGACCACGATTTCTCTAAACTCCAGCCCCAAAAGTTCGGCACTTCAAGTGCGAGCTCAGGAGCTGGATCGCGTCCCTTTGGAACAGCGGTGGATGTTCGAAGGCGACGAGCTCGACGGCCCTGACATTTGGAATAAAACATGGTACCCGAAGGCTGCAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGGCTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGGCAACCTACACTCCTAGTGTGGATATGGGAGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCGGTGTCTGGCAAAAAGAGGACACAAAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACGGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGATCATCCACACGAGGCACAAAAGCCAGTTGAGCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAG

Protein sequence

MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSPKSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER

Homology

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BLAST of CcUC11G224640 vs. NCBI nr
Match: XP_004146016.1 (50S ribosomal protein L13, chloroplastic [Cucumis sativus] >KGN55030.1 hypothetical protein Csa_012763 [Cucumis sativus])

HSP 1 Score: 467.2 bits (1201), Expect = 8.6e-128
Identity = 232/248 (93.55%), Postives = 238/248 (95.97%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSP 60
           MAMLCASSSTPTFSL STLTNG+TS +S PR SLL  FPLPHSKSSFLLTQT+ISL S+ 
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K SALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEK+AVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CcUC11G224640 vs. NCBI nr
Match: XP_008463780.1 (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo])

HSP 1 Score: 465.7 bits (1197), Expect = 2.5e-127
Identity = 233/248 (93.95%), Postives = 237/248 (95.56%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSP 60
           MAMLCASSSTPTFSL S+LTNG+TS RSIP  SLL  FPLPHSKSSFLLTQTTI L S+ 
Sbjct: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60

Query: 61  KSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K SAL+VRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CcUC11G224640 vs. NCBI nr
Match: XP_022941245.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 456.8 bits (1174), Expect = 1.2e-124
Identity = 227/248 (91.53%), Postives = 234/248 (94.35%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSP 60
           MAMLCASSST TFSL STL N + S R+IPR SL+AGFPLP SKSSFL TQTTI+L S P
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CcUC11G224640 vs. NCBI nr
Match: XP_023524699.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456.4 bits (1173), Expect = 1.5e-124
Identity = 227/248 (91.53%), Postives = 235/248 (94.76%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSP 60
           MAMLCASSST TFSL STL NG+ S R++PR SL+AGFPL  SKSSFL TQTTI+L S P
Sbjct: 1   MAMLCASSSTATFSLHSTLNNGNASNRALPRMSLVAGFPLVQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KSS LQVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVLQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CcUC11G224640 vs. NCBI nr
Match: KAG6607943.1 (50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 455.3 bits (1170), Expect = 3.4e-124
Identity = 226/248 (91.13%), Postives = 234/248 (94.35%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSP 60
           MAMLCASSST TFSL STL N + S R+IPR SL+AGFPLP SKSSFL TQTTI+L S P
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMF+GDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFKGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CcUC11G224640 vs. ExPASy Swiss-Prot
Match: Q9SYL9 (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL13 PE=2 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 7.4e-90
Identity = 180/254 (70.87%), Postives = 199/254 (78.35%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPH-SKSSFLLTQTTISLNSS 60
           MA+LC SSST   S  S  ++GS       RKS   GF L   SK S    +  I  NS 
Sbjct: 1   MAVLC-SSSTVILSSSSVKSSGS------ERKSPFLGFSLTAISKPS---VRVGIYANS- 60

Query: 61  PKSSALQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYV 120
                LQV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+V
Sbjct: 61  --KRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFV 120

Query: 121 VDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRH 180
           VDATDKILGRLASTIANHIRGK+LA+YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRH
Sbjct: 121 VDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRH 180

Query: 181 SGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240
           SGRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP
Sbjct: 181 SGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240

Query: 241 VELPIRDKRINKER 249
           ++LPIRDKRI  ++
Sbjct: 241 LDLPIRDKRIQLQK 241

[Close]

BLAST of CcUC11G224640 vs. ExPASy Swiss-Prot
Match: P12629 (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 PE=1 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.8e-81
Identity = 161/250 (64.40%), Postives = 189/250 (75.60%), Query Frame = 0


Query: 3   MLCASSST-PTFSLQSTL--TN-GSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNS 62
           M CASS T P+   Q +   TN   T   S PR ++ A   +   KS+   T+ T     
Sbjct: 4   MACASSLTFPSAQTQKSFFGTNVKQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQ 63

Query: 63  SPKSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDAT 122
             ++   +     +  VPL+QRWMF  +E  GPDIWN TWYPK+ADHV T+K WYVVDAT
Sbjct: 64  LKEAVKKEF---AIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDAT 123

Query: 123 DKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 182
           D ILGR+ASTIA HIRGK+LA+YTPSVDMGAFVIVVNA+KVAVSGKKRTQKLYRRHSGRP
Sbjct: 124 DLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRP 183

Query: 183 GGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELP 242
           GG+  ETFDQLQ+RIPERIIEHAVRGMLPKGRLGR LFNHLKVYKG +HPH+AQ+P++LP
Sbjct: 184 GGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLP 243

Query: 243 IRDKRINKER 249
           +RDKRI  E+
Sbjct: 244 LRDKRIRVEK 250

[Close]

BLAST of CcUC11G224640 vs. ExPASy Swiss-Prot
Match: Q3MF94 (50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplM PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.5e-50
Identity = 101/145 (69.66%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+ A YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+GKKRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPI 240
           LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of CcUC11G224640 vs. ExPASy Swiss-Prot
Match: Q8YPK6 (50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplM PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.4e-50
Identity = 100/145 (68.97%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+ A YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NA+KVAV+GKKRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPI 240
           LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of CcUC11G224640 vs. ExPASy Swiss-Prot
Match: B8HMT1 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplM PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-49
Identity = 98/146 (67.12%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVV 154
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK    YTPS+D G FVIVV
Sbjct: 2   NKTYLPST---TSLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 155 NAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+GKKRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK  LGR 
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPIR 241
           LF  LKVY GPDHPH+AQKP  L ++
Sbjct: 122 LFTKLKVYAGPDHPHQAQKPEVLTLK 144

[Close]

BLAST of CcUC11G224640 vs. ExPASy TrEMBL
Match: A0A0A0KZG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.2e-128
Identity = 232/248 (93.55%), Postives = 238/248 (95.97%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSP 60
           MAMLCASSSTPTFSL STLTNG+TS +S PR SLL  FPLPHSKSSFLLTQT+ISL S+ 
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K SALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEK+AVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CcUC11G224640 vs. ExPASy TrEMBL
Match: A0A1S3CK07 (50S ribosomal protein L13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501842 PE=3 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.2e-127
Identity = 233/248 (93.95%), Postives = 237/248 (95.56%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSP 60
           MAMLCASSSTPTFSL S+LTNG+TS RSIP  SLL  FPLPHSKSSFLLTQTTI L S+ 
Sbjct: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60

Query: 61  KSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K SAL+VRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CcUC11G224640 vs. ExPASy TrEMBL
Match: A0A6J1FT16 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446606 PE=3 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 5.6e-125
Identity = 227/248 (91.53%), Postives = 234/248 (94.35%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSP 60
           MAMLCASSST TFSL STL N + S R+IPR SL+AGFPLP SKSSFL TQTTI+L S P
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CcUC11G224640 vs. ExPASy TrEMBL
Match: A0A6J1IW42 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480461 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 8.1e-124
Identity = 225/248 (90.73%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSP 60
           MAMLCASSST TFSL ST  N + S R+IPRKSL+AGFPLP SKSSFL TQTTI+L S P
Sbjct: 1   MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWN TWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CcUC11G224640 vs. ExPASy TrEMBL
Match: A0A6J1F6Z3 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442721 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.1e-123
Identity = 226/248 (91.13%), Postives = 231/248 (93.15%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPHSKSSFLLTQTTISLNSSP 60
           MAMLCASSSTPTF + STL NGS S R IPRKS + GFPLP SKS  L TQTTI+LNS  
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KSS +QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDL TYTPSVDMGAFVIVVNAEKVAVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CcUC11G224640 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 331.6 bits (849), Expect = 5.3e-91
Identity = 180/254 (70.87%), Postives = 199/254 (78.35%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLQSTLTNGSTSTRSIPRKSLLAGFPLPH-SKSSFLLTQTTISLNSS 60
           MA+LC SSST   S  S  ++GS       RKS   GF L   SK S    +  I  NS 
Sbjct: 1   MAVLC-SSSTVILSSSSVKSSGS------ERKSPFLGFSLTAISKPS---VRVGIYANS- 60

Query: 61  PKSSALQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYV 120
                LQV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+V
Sbjct: 61  --KRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFV 120

Query: 121 VDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRH 180
           VDATDKILGRLASTIANHIRGK+LA+YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRH
Sbjct: 121 VDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRH 180

Query: 181 SGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240
           SGRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP
Sbjct: 181 SGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240

Query: 241 VELPIRDKRINKER 249
           ++LPIRDKRI  ++
Sbjct: 241 LDLPIRDKRIQLQK 241

[Close]

BLAST of CcUC11G224640 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-17
Identity = 46/125 (36.80%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD  TY P+ D G   IV+NA+++  +G+K T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

[Close]

BLAST of CcUC11G224640 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-17
Identity = 46/125 (36.80%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD  TY P+ D G   IV+NA+++  +G+K T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

The following BLAST results are available for this feature:

BLAST of CcUC11G224640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146016.1	8.6e-128	93.55	50S ribosomal protein L13, chloroplastic [Cucumis sativus] >KGN55030.1 hypotheti...	[more]
XP_008463780.1	2.5e-127	93.95	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo]	[more]
XP_022941245.1	1.2e-124	91.53	50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata]	[more]
XP_023524699.1	1.5e-124	91.53	50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6607943.1	3.4e-124	91.13	50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of CcUC11G224640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYL9	7.4e-90	70.87	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P12629	4.8e-81	64.40	50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 P...	[more]
Q3MF94	1.5e-50	69.66	50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]
Q8YPK6	4.4e-50	68.97	50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
B8HMT1	1.7e-49	67.12	50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of CcUC11G224640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZG1	4.2e-128	93.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1	[more]
A0A1S3CK07	1.2e-127	93.95	50S ribosomal protein L13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501842...	[more]
A0A6J1FT16	5.6e-125	91.53	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IW42	8.1e-124	90.73	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1F6Z3	1.1e-123	91.13	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CcUC11G224640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78630.1	5.3e-91	70.87	Ribosomal protein L13 family protein	[more]
AT3G01790.1	2.9e-17	36.80	Ribosomal protein L13 family protein	[more]
AT3G01790.2	2.9e-17	36.80	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 111..228 e-value: 1.2E-43 score: 148.0
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 64..245
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 112..238 score: 26.888853
IPR005822	Ribosomal protein L13	CDD	cd00392	Ribosomal_L13	coord: 112..225 e-value: 1.4529E-64 score: 194.646
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAM	TIGR01066	TIGR01066	coord: 106..237 e-value: 2.5E-56 score: 187.4
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 101..244 e-value: 2.9E-60 score: 204.2
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 106..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR11545:SF27	BNAA02G18970D PROTEIN	coord: 64..245
IPR023563	Ribosomal protein L13, conserved site	PROSITE	PS00783	RIBOSOMAL_L13	coord: 202..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G224640.1	CcUC11G224640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome