CcUC11G222340 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G222340
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein 6, chloroplastic
Location	CicolChr11: 26926785 .. 26927105 (-)
RNA-Seq Expression	CcUC11G222340
Synteny	CcUC11G222340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATTTCCACCTTTTTCGGCTGTAGGATTTCGATTCCGCCATTGTTGAATTCATCTGCAAGCAAAGAAGCTCCATGCTCCGGCGGAAATTTGGTGATTGAATGCTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAATCTCAGCCATGGGACATTCGGCGCAAACCGACTGTGTATCCTCCTCTGCCGCCTCTTCCGCCGGACTGGACCTTGGTTTCATCAGTTTCCGGCGATGAAAATGTCGAGGTAGCCTCGATTTCTTCGTCTGCACAAGCACCGGTTACTAGCGAGTAA

mRNA sequence

ATGTCGATTTCCACCTTTTTCGGCTGTAGGATTTCGATTCCGCCATTGTTGAATTCATCTGCAAGCAAAGAAGCTCCATGCTCCGGCGGAAATTTGGTGATTGAATGCTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAATCTCAGCCATGGGACATTCGGCGCAAACCGACTGTGTATCCTCCTCTGCCGCCTCTTCCGCCGGACTGGACCTTGGTTTCATCAGTTTCCGGCGATGAAAATGTCGAGGTAGCCTCGATTTCTTCGTCTGCACAAGCACCGGTTACTAGCGAGTAA

Coding sequence (CDS)

ATGTCGATTTCCACCTTTTTCGGCTGTAGGATTTCGATTCCGCCATTGTTGAATTCATCTGCAAGCAAAGAAGCTCCATGCTCCGGCGGAAATTTGGTGATTGAATGCTCGTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCACGGAAATCTCAGCCATGGGACATTCGGCGCAAACCGACTGTGTATCCTCCTCTGCCGCCTCTTCCGCCGGACTGGACCTTGGTTTCATCAGTTTCCGGCGATGAAAATGTCGAGGTAGCCTCGATTTCTTCGTCTGCACAAGCACCGGTTACTAGCGAGTAA

Protein sequence

MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQAPVTSE

Homology

[Close]

BLAST of CcUC11G222340 vs. NCBI nr
Match: XP_011652886.1 (50S ribosomal protein 6, chloroplastic [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTF GC+IS+PPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQAPVTSE 107
           IRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ASISSSAQAPVTSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106

[Close]

BLAST of CcUC11G222340 vs. NCBI nr
Match: XP_008466097.1 (PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo] >KAA0038635.1 50S ribosomal protein 6 [Cucumis melo var. makuwa] >TYK31235.1 50S ribosomal protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 196.8 bits (499), Expect = 9.3e-47
Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTF GC+IS+PPLLNSSASK APCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSGGNLPIECSSRPNKKATAHHMKTRPKKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQAPVTSE 107
           IRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ S SSSAQAP+TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIVSTSSSAQAPLTSE 106

[Close]

BLAST of CcUC11G222340 vs. NCBI nr
Match: XP_023536142.1 (50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187.6 bits (475), Expect = 5.6e-44
Identity = 96/107 (89.72%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTFFG RIS+PPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTFFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSAQAPVTSE 107
           IRRKPTVYPPLPPLPPDWT+VSS+S DE VEVA SI+SSAQAP T+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTVVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of CcUC11G222340 vs. NCBI nr
Match: XP_022936242.1 (50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSIST+FG RIS+PPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTYFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSAQAPVTSE 107
           IRRKPTVYPPLPPLPPDWT VSS+S DE VEVA SI+SSAQAP T+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTAVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of CcUC11G222340 vs. NCBI nr
Match: KAG6591720.1 (50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.3 bits (469), Expect = 2.8e-43
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTFFG RIS+PPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTFFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEV-ASISSSAQAPVTSE 107
           IRRKPTVYPPLPPLPPDWT+VSS+S DE VEV AS +SSAQAP T+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTVVSSISSDEIVEVAASSASSAQAPPTTE 107

[Close]

BLAST of CcUC11G222340 vs. ExPASy Swiss-Prot
Match: P82411 (50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP6 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-22
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 1   MSISTFFGCR-ISIPPLLNSSA----------SKEAPCSGGNLVIECSSRPNKKATAHHM 60
           MS+S  FG R ++IP +L +S+          S    C GG + IECSSRP KK TAHHM
Sbjct: 1   MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHM 60

Query: 61  KTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQ 101
           KTRP+K+  WDI+R P VYPPLPPLP +WT+VSS   + +   ++ SSSA+
Sbjct: 61  KTRPKKTARWDIKRGPAVYPPLPPLPAEWTIVSSAVDEADSSSSTTSSSAE 111

[Close]

BLAST of CcUC11G222340 vs. ExPASy Swiss-Prot
Match: P11892 (50S ribosomal protein 6, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-19
Identity = 50/83 (60.24%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 2  SISTFFGCRISIPP---LLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQP 61
          S+S+ FGC +S+ P   L N +   E   + G L+IECSSRP KK+TAHHMKTRPRKS+ 
Sbjct: 3  SVSSIFGCGVSMAPNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKSRL 62

Query: 62 WDIRRKPTVYPPLPPLPPDWTLV 82
           D  RKPTVY PLPPLPPD+T+V
Sbjct: 63 SDRNRKPTVYAPLPPLPPDFTIV 85

[Close]

BLAST of CcUC11G222340 vs. ExPASy Swiss-Prot
Match: Q9FKP0 (50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1  MSISTFFGCRI----SIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKS 60
          MS+S  FG  I    + P L      K     G  +VIECSSRP KK+TAHH KTRP+K+
Sbjct: 1  MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60

Query: 61 QPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVAS 95
          QPWDI+RKPTVY PLPPLP +W+  +  S D     A+
Sbjct: 61 QPWDIKRKPTVYAPLPPLPAEWSPFTLASDDGGAATAA 98

[Close]

BLAST of CcUC11G222340 vs. ExPASy TrEMBL
Match: A0A0A0LHS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894500 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTF GC+IS+PPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQAPVTSE 107
           IRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ASISSSAQAPVTSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106

[Close]

BLAST of CcUC11G222340 vs. ExPASy TrEMBL
Match: A0A5A7TB88 (50S ribosomal protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005220 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.5e-47
Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTF GC+IS+PPLLNSSASK APCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSGGNLPIECSSRPNKKATAHHMKTRPKKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQAPVTSE 107
           IRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ S SSSAQAP+TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIVSTSSSAQAPLTSE 106

[Close]

BLAST of CcUC11G222340 vs. ExPASy TrEMBL
Match: A0A1S3CQF4 (50S ribosomal protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503622 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.5e-47
Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTF GC+IS+PPLLNSSASK APCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSGGNLPIECSSRPNKKATAHHMKTRPKKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVASISSSAQAPVTSE 107
           IRRKPTVYPPLPPLPPDWTLVSSVSGDENVE+ S SSSAQAP+TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIVSTSSSAQAPLTSE 106

[Close]

BLAST of CcUC11G222340 vs. ExPASy TrEMBL
Match: A0A6J1F7W7 (50S ribosomal protein 6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442914 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSIST+FG RIS+PPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTYFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSAQAPVTSE 107
           IRRKPTVYPPLPPLPPDWT VSS+S DE VEVA SI+SSAQAP T+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTAVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of CcUC11G222340 vs. ExPASy TrEMBL
Match: A0A6J1IDX3 (50S ribosomal protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476133 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.3e-43
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MSISTFFGCRISIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTF G RIS+PPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTFSGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVA-SISSSAQAPVTSE 107
           IRRKPTVYPPLPPLPPDWT+VSS+S DE VEVA SI+SSAQAP T+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTVVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of CcUC11G222340 vs. TAIR 10
Match: AT5G17870.1 (plastid-specific 50S ribosomal protein 6 )

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-19
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1  MSISTFFGCRI----SIPPLLNSSASKEAPCSGGNLVIECSSRPNKKATAHHMKTRPRKS 60
          MS+S  FG  I    + P L      K     G  +VIECSSRP KK+TAHH KTRP+K+
Sbjct: 1  MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60

Query: 61 QPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEVAS 95
          QPWDI+RKPTVY PLPPLP +W+  +  S D     A+
Sbjct: 61 QPWDIKRKPTVYAPLPPLPAEWSPFTLASDDGGAATAA 98

The following BLAST results are available for this feature:

BLAST of CcUC11G222340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652886.1	3.8e-48	93.40	50S ribosomal protein 6, chloroplastic [Cucumis sativus]	[more]
XP_008466097.1	9.3e-47	90.57	PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo] >KAA0038635.1 5...	[more]
XP_023536142.1	5.6e-44	89.72	50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022936242.1	2.1e-43	88.79	50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]	[more]
KAG6591720.1	2.8e-43	88.79	50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of CcUC11G222340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82411	2.8e-22	50.45	50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP6 PE=...	[more]
P11892	1.7e-19	60.24	50S ribosomal protein 6, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP6 PE=3 SV...	[more]
Q9FKP0	1.5e-18	51.02	50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP6 ...	[more]

BLAST of CcUC11G222340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHS7	1.8e-48	93.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894500 PE=4 SV=1	[more]
A0A5A7TB88	4.5e-47	90.57	50S ribosomal protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CQF4	4.5e-47	90.57	50S ribosomal protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503622 P...	[more]
A0A6J1F7W7	1.0e-43	88.79	50S ribosomal protein 6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IDX3	2.3e-43	88.79	50S ribosomal protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1114761...	[more]

BLAST of CcUC11G222340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17870.1	1.0e-19	51.02	plastid-specific 50S ribosomal protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020526	Ribosomal protein L6, chloroplast	PFAM	PF17257	DUF5323	coord: 28..86 e-value: 1.4E-38 score: 130.6
IPR020526	Ribosomal protein L6, chloroplast	PANTHER	PTHR36798	50S RIBOSOMAL PROTEIN 6, CHLOROPLASTIC	coord: 1..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..72
None	No IPR available	PANTHER	PTHR36798:SF2	50S RIBOSOMAL PROTEIN 6, CHLOROPLASTIC	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G222340.1	CcUC11G222340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome