CcUC11G221300 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G221300
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Pentatricopeptide repeat-containing protein
Location	CicolChr11: 25783427 .. 25783732 (-)
RNA-Seq Expression	CcUC11G221300
Synteny	CcUC11G221300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCAAATGGCGCAATTCACGTAGTCAAAGCATCAGATTGGGTCAGAGCTGTGTTTCTTCGATTCAACAAGAAAGCAAACAACTCGGATGGCAGATTTTGTGGAGAAAATTCAAGAAGGAGAAGGAAAAAATCTTCAGTTGTTCTTCAGTTGAGTTACGTTCTTCTTATAATCCAAATGCTTATCAGTTGAATTTTGATGAAGAAAATTGGGGCTCTGATCCTGATAATCTCTGCCGATCTTTCTCTGCTCGTTTTGCTGATCCATCAATTGTTTCAAGGAACTTGAGATTGTTGGATTAA

mRNA sequence

ATGGGAATCAAATGGCGCAATTCACGTAGTCAAAGCATCAGATTGGGTCAGAGCTGTGTTTCTTCGATTCAACAAGAAAGCAAACAACTCGGATGGCAGATTTTGTGGAGAAAATTCAAGAAGGAGAAGGAAAAAATCTTCAGTTGTTCTTCAGTTGAGTTACGTTCTTCTTATAATCCAAATGCTTATCAGTTGAATTTTGATGAAGAAAATTGGGGCTCTGATCCTGATAATCTCTGCCGATCTTTCTCTGCTCGTTTTGCTGATCCATCAATTGTTTCAAGGAACTTGAGATTGTTGGATTAA

Coding sequence (CDS)

ATGGGAATCAAATGGCGCAATTCACGTAGTCAAAGCATCAGATTGGGTCAGAGCTGTGTTTCTTCGATTCAACAAGAAAGCAAACAACTCGGATGGCAGATTTTGTGGAGAAAATTCAAGAAGGAGAAGGAAAAAATCTTCAGTTGTTCTTCAGTTGAGTTACGTTCTTCTTATAATCCAAATGCTTATCAGTTGAATTTTGATGAAGAAAATTGGGGCTCTGATCCTGATAATCTCTGCCGATCTTTCTCTGCTCGTTTTGCTGATCCATCAATTGTTTCAAGGAACTTGAGATTGTTGGATTAA

Protein sequence

MGIKWRNSRSQSIRLGQSCVSSIQQESKQLGWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLLD

Homology

[Close]

BLAST of CcUC11G221300 vs. NCBI nr
Match: KGN60340.2 (hypothetical protein Csa_000895 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 2.7e-43
Identity = 90/101 (89.11%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1    MGIKWRNSRSQSIRLGQSCVSSIQQESKQLGWQILWRKFKKEKEKIFSCSSVELRSSYNP 60
            MG+KWRNSRSQSIRLGQSCVSS +QESK+LGWQILWRK KKEK K+FSCSSVELRSSYNP
Sbjct: 1030 MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 1089

Query: 61   NAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLLD 102
            NAY LNFDEENW S+PDNL RSFSARFADPSIVSRNLRLLD
Sbjct: 1090 NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 1130

[Close]

BLAST of CcUC11G221300 vs. NCBI nr
Match: XP_023536137.1 (uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 8.6e-42
Identity = 88/102 (86.27%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSIQQESKQ-LGWQILWRKFKKEKEKIFSCSSVELRSSYN 60
           MGIKWRNSRSQSIRLGQSC SS +QESK+ LGWQILW+KFKKEK +IFSCSSVELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLLD 102
           PNAY+LNF++ENWGSDPD+LCRSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CcUC11G221300 vs. NCBI nr
Match: XP_022936244.1 (uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothetical protein SDJN02_13350, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.3 bits (456), Expect = 8.6e-42
Identity = 88/102 (86.27%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSIQQESKQL-GWQILWRKFKKEKEKIFSCSSVELRSSYN 60
           MGIKWRNSRSQSIRLGQSC SS +QESK+L GWQILW+KFKKEK +IFSCSSVELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLLD 102
           PNAY+LNF++ENWGSDPD+LCRSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CcUC11G221300 vs. NCBI nr
Match: KAG6591653.1 (hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.6 bits (449), Expect = 5.5e-41
Identity = 87/102 (85.29%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSIQQESKQL-GWQILWRKFKKEKEKIFSCSSVELRSSYN 60
           MGIKWRNSRSQSIRLGQSC S  +QESK+L GWQILW+KFKKEK +IFSCSSVELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSWNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLLD 102
           PNAY+LNF++ENWGSDPD+LCRSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CcUC11G221300 vs. NCBI nr
Match: KAB2629574.1 (pentatricopeptide repeat-containing protein [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-16
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQSCVSSIQQESKQLGWQILWRKFKKEKEKIFSCSSV--ELRSS 60
           MGI+ WRNSRSQSIRLG +          Q GWQ  W++FK E++KIF  S+V  + ++S
Sbjct: 1   MGIREWRNSRSQSIRLGHNYDMPSNYNKSQPGWQKFWKRFKIERKKIFGSSTVMPQAQAS 60

Query: 61  YNPNAYQLNFDEENWGSDPDNLCRSFSARFADPS-IVSRNLRLLD 102
           Y+P+ Y  NFD+     +PDNL RSFSARFADPS ++  N  LLD
Sbjct: 61  YDPDTYSKNFDQGTQWMEPDNLPRSFSARFADPSRVLHGNRNLLD 105

[Close]

BLAST of CcUC11G221300 vs. ExPASy TrEMBL
Match: A0A0A0LJH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 90/101 (89.11%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSIQQESKQLGWQILWRKFKKEKEKIFSCSSVELRSSYNP 60
           MG+KWRNSRSQSIRLGQSCVSS +QESK+LGWQILWRK KKEK K+FSCSSVELRSSYNP
Sbjct: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 60

Query: 61  NAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLLD 102
           NAY LNFDEENW S+PDNL RSFSARFADPSIVSRNLRLLD
Sbjct: 61  NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101

[Close]

BLAST of CcUC11G221300 vs. ExPASy TrEMBL
Match: A0A6J1F7R9 (uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC111442916 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.1e-42
Identity = 88/102 (86.27%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MGIKWRNSRSQSIRLGQSCVSSIQQESKQL-GWQILWRKFKKEKEKIFSCSSVELRSSYN 60
           MGIKWRNSRSQSIRLGQSC SS +QESK+L GWQILW+KFKKEK +IFSCSSVELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLLD 102
           PNAY+LNF++ENWGSDPD+LCRSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CcUC11G221300 vs. ExPASy TrEMBL
Match: A0A5N5I1S5 (Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034369 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.9e-17
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQSCVSSIQQESKQLGWQILWRKFKKEKEKIFSCSSV--ELRSS 60
           MGI+ WRNSRSQSIRLG +          Q GWQ  W++FK E++KIF  S+V  + ++S
Sbjct: 1   MGIREWRNSRSQSIRLGHNYDMPSNYNKSQPGWQKFWKRFKIERKKIFGSSTVMPQAQAS 60

Query: 61  YNPNAYQLNFDEENWGSDPDNLCRSFSARFADPS-IVSRNLRLLD 102
           Y+P+ Y  NFD+     +PDNL RSFSARFADPS ++  N  LLD
Sbjct: 61  YDPDTYSKNFDQGTQWMEPDNLPRSFSARFADPSRVLHGNRNLLD 105

[Close]

BLAST of CcUC11G221300 vs. ExPASy TrEMBL
Match: A0A6J5TRF8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8866 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.0e-16
Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQSCVSSIQQESKQLGWQILWRKFKKE-KEKIFSCSSVELR-SS 60
           MGIK W NSRSQSIRLGQ  +SS   +  Q GWQ  W+KFK + K+K FS S+V  + +S
Sbjct: 1   MGIKEWCNSRSQSIRLGQPYMSSNYNKPDQPGWQRFWKKFKMDKKKKSFSSSTVTPQAAS 60

Query: 61  YNPNAYQLNFDEENWGSDPDNLCRSFSARFADPS-IVSRNLRLLD 102
           Y+P  Y  NFD      +PDNL R FSARFADPS I+ +N  LLD
Sbjct: 61  YDPKTYSKNFDPGMGSMEPDNLSRCFSARFADPSMILHKNRNLLD 105

[Close]

BLAST of CcUC11G221300 vs. ExPASy TrEMBL
Match: A0A5N5HP14 (Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034370 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.7e-16
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 1   MGIK-WRNSRSQSIRLGQSCVSSIQQESKQLGWQILWRKFKKEKEKIFSCSSV--ELRSS 60
           MGI+ WRNSRSQSIRLG +          Q GWQ  W++FK E++K F  S+V  + ++S
Sbjct: 1   MGIREWRNSRSQSIRLGHNYDMPSNYNKSQPGWQKFWKRFKIERKKNFGSSTVTPQAQTS 60

Query: 61  YNPNAYQLNFDEENWGSDPDNLCRSFSARFADPS-IVSRNLRLLD 102
           Y+P  Y  NFD+     +PDNL RSFSARFADPS ++  N  LLD
Sbjct: 61  YDPETYSKNFDQGTGWMEPDNLPRSFSARFADPSRVLHGNRNLLD 105

[Close]

BLAST of CcUC11G221300 vs. TAIR 10
Match: AT2G25735.1 (unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 35/103 (33.98%), Postives = 50/103 (48.54%), Query Frame = 0


Query: 7   NSRSQSIRLGQSCVSSIQQESKQL------GWQILWRKFKKEKEKIFSCSSVELRSSYNP 66
           +S  ++I LG+   S  +Q+  Q        W++L  K K    +  S   V    +Y P
Sbjct: 20  SSHRETIVLGRYSKSCREQKQHQRRERLLPKWKVLLMKLKLLPSRASSTKVV----AYEP 79

Query: 67  NAYQLNFDE-ENW--GSDPDNLCRSFSARFADPSIVSRNLRLL 101
             Y LNFD+   W    +P+NL RSFS RFADP+ +     LL
Sbjct: 80  CDYSLNFDQGPGWHDHDEPENLSRSFSCRFADPTRIRETRFLL 118

The following BLAST results are available for this feature:

BLAST of CcUC11G221300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60340.2	2.7e-43	89.11	hypothetical protein Csa_000895 [Cucumis sativus]	[more]
XP_023536137.1	8.6e-42	86.27	uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo]	[more]
XP_022936244.1	8.6e-42	86.27	uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothet...	[more]
KAG6591653.1	5.5e-41	85.29	hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB2629574.1	1.6e-16	51.43	pentatricopeptide repeat-containing protein [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of CcUC11G221300 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC11G221300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJH9	1.3e-43	89.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1	[more]
A0A6J1F7R9	4.1e-42	86.27	uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC1114429...	[more]
A0A5N5I1S5	7.9e-17	51.43	Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communi...	[more]
A0A6J5TRF8	3.0e-16	55.24	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8866 PE=4 SV...	[more]
A0A5N5HP14	6.7e-16	50.48	Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communi...	[more]

BLAST of CcUC11G221300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25735.1	1.5e-04	33.98	unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 8..100
None	No IPR available	PANTHER	PTHR33168:SF35	SUBFAMILY NOT NAMED	coord: 8..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G221300.1	CcUC11G221300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity