CcUC11G219830 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC11G219830
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationCicolChr11: 23931986 .. 23932263 (+)
RNA-Seq ExpressionCcUC11G219830
SyntenyCcUC11G219830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAATTTCCTTTGGGAATGTTCAGAAAAAATTGGTGCATCACACCTTATCCGTTGGGAAATTGTCATCACCCCAAAAACCATGGGAGGCCTTGGGATCGAGAAATTAAAAACTACAAATTCTGCTCTGTTATGCAAGTGGATCTGGAGGTATTTAACTGAAGAAGACAACTGGTTGTGATTGATGCCAAGTACAAAGCCGATCAACTAGATCTATTCCATCCATATGCAATCATAGCAGTTCAAAATCCCCTTGGTTCAATATTGCTAGACTAA

mRNA sequence

ATGAGAAATTTCCTTTGGGAATGTTCAGAAAAAATTGGTGCATCACACCTTATCCGTTGGGAAATTGTCATCACCCCAAAAACCATGGGAGGCCTTGGGATCGAGAAATTAAAAACTACAAATTCTGCTCTGTTATGCAAAAGACAACTGGTTGTGATTGATGCCAAGTACAAAGCCGATCAACTAGATCTATTCCATCCATATGCAATCATAGCAGTTCAAAATCCCCTTGGTTCAATATTGCTAGACTAA

Coding sequence (CDS)

ATGAGAAATTTCCTTTGGGAATGTTCAGAAAAAATTGGTGCATCACACCTTATCCGTTGGGAAATTGTCATCACCCCAAAAACCATGGGAGGCCTTGGGATCGAGAAATTAAAAACTACAAATTCTGCTCTGTTATGCAAAAGACAACTGGTTGTGATTGATGCCAAGTACAAAGCCGATCAACTAGATCTATTCCATCCATATGCAATCATAGCAGTTCAAAATCCCCTTGGTTCAATATTGCTAGACTAA

Protein sequence

MRNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCKRQLVVIDAKYKADQLDLFHPYAIIAVQNPLGSILLD
Homology
[Close]
BLAST of CcUC11G219830 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-06
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2    RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
            R+FLW  SE    +HLI W I  +PK +GGLGI KLK TN ALLCK
Sbjct: 1434 RDFLWGGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCK 1479

[Close]
BLAST of CcUC11G219830 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-06
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2    RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
            R+FLW  SE    +HLI W I  +PK +GGLGI KLK TN ALLCK
Sbjct: 1434 RDFLWGGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCK 1479

[Close]
BLAST of CcUC11G219830 vs. NCBI nr
Match: KAA0035248.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 8.1e-06
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2   RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
           R+FLW  SE    +HL+ W I  +PK +GGLGI KLK TN ALLCK
Sbjct: 230 RDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCK 275

[Close]
BLAST of CcUC11G219830 vs. NCBI nr
Match: TYK22403.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 8.1e-06
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2   RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
           R+FLW  SE    +HL+ W I  +PK +GGLGI KLK TN ALLCK
Sbjct: 230 RDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCK 275

[Close]
BLAST of CcUC11G219830 vs. NCBI nr
Match: TYK28859.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2   RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
           R+FLW  SE    +HLI W I  +PK +GG+GI KLK TN ALLCK
Sbjct: 302 RDFLWGGSEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCK 347

[Close]
BLAST of CcUC11G219830 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-04
Identity = 19/46 (41.30%), Postives = 27/46 (58.70%), Query Frame = 0 

Query: 2   RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
           R FLW  + +    HL++W  V +PK  GGLG+   K+ N AL+ K
Sbjct: 71  RTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISK 116

[Close]
BLAST of CcUC11G219830 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2    RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
            R+FLW  SE    +HLI W I  +PK +GGLGI KLK TN ALLCK
Sbjct: 1434 RDFLWGGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCK 1479

[Close]
BLAST of CcUC11G219830 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2    RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
            R+FLW  SE    +HLI W I  +PK +GGLGI KLK TN ALLCK
Sbjct: 1434 RDFLWGGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCK 1479

[Close]
BLAST of CcUC11G219830 vs. ExPASy TrEMBL
Match: A0A5A7SXB2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G00260 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2   RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
           R+FLW  SE    +HL+ W I  +PK +GGLGI KLK TN ALLCK
Sbjct: 230 RDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCK 275

[Close]
BLAST of CcUC11G219830 vs. ExPASy TrEMBL
Match: A0A5D3DFS9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00280 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2   RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
           R+FLW  SE    +HL+ W I  +PK +GGLGI KLK TN ALLCK
Sbjct: 230 RDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCK 275

[Close]
BLAST of CcUC11G219830 vs. ExPASy TrEMBL
Match: A0A5D3DZM5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00720 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.1e-06
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 2   RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK 48
           R+FLW  SE    +HLI W I  +PK +GG+GI KLK TN ALLCK
Sbjct: 302 RDFLWGGSEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCK 347

The following BLAST results are available for this feature:
BLAST of CcUC11G219830 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08190.16.2e-0660.87LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0057507.16.2e-0660.87LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0035248.18.1e-0658.70LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK22403.18.1e-0658.70LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK28859.11.1e-0558.70LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
BLAST of CcUC11G219830 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0C2F63.5e-0441.30Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
BLAST of CcUC11G219830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7US623.0e-0660.87LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CA173.0e-0660.87LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7SXB23.9e-0658.70LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DFS93.9e-0658.70LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DZM55.1e-0658.70LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of CcUC11G219830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC11G219830.1CcUC11G219830.1mRNA