CcUC11G219640 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC11G219640
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA repair protein XRCC3 homolog
LocationCicolChr11: 23447538 .. 23448419 (+)
RNA-Seq ExpressionCcUC11G219640
SyntenyCcUC11G219640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCCGGAAAATCTCCTCAATCTCCTTCAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTTGCCTGCAGCTCCCTCACTGAAATCGTCGCCGAAAGCGGCTGCGGCAAAACCCAACTCTGTCTCCAGCTCTCTCTCTGCGCTCAGCTCCCTCTCTCCAATGGCGGCCTCAACGCCTCATCTCTCTACATCCACACCGAATTCCCTTTCCCCTTTCGACGCCTTCAACAACTTTCCCAAGCATTTTCCTCTTCATATCCCCAATTTTCAAACCCCTCCGATCACATCTTTGTCGAACCCGTTCACTCTGTCCACCAACTGTTCGACATAATGTCCAAGATAGAATTCTTCCTCCAAAATCGAAATTCCCAATTGCCCATCAGGCTTATTGTGATTGATTCGATTGCGGCGTTGTTTCGCTCTGATTTCGACAACACCCCATCTGATCTCAAGCGGAGATCTTCTCTGTTTTTCAAGATTTCTGGGAGGTTGAAGTTGTTGGCTAAGAAGTATTCTTTGGCTGTGGTTTTGACGAATCAGGTGGTTGATCTGATGGGTTCTTCTGATGGATTGAATGCTTTGAGAATTGGGAATTTGAAGTTCTTGTGTTCGTCGGGACGACAGGTTTGCCCGGCGCTGGGGCTGGCGTGGGCTAATTGTGTTAATTCAAGATTGTTTCTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGATGGGATGATGAATGGTAGTGAATTACTACAACGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTATGTAATCAAGAGAGAAGGAGTTGTGGGAGTTGAAAGCCAATGA

mRNA sequence

ATGACGCCGGAAAATCTCCTCAATCTCCTTCAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTTGCCTGCAGCTCCCTCACTGAAATCGTCGCCGAAAGCGGCTGCGGCAAAACCCAACTCTGTCTCCAGCTCTCTCTCTGCGCTCAGCTCCCTCTCTCCAATGGCGGCCTCAACGCCTCATCTCTCTACATCCACACCGAATTCCCTTTCCCCTTTCGACGCCTTCAACAACTTTCCCAAGCATTTTCCTCTTCATATCCCCAATTTTCAAACCCCTCCGATCACATCTTTGTCGAACCCGTTCACTCTGTCCACCAACTGTTCGACATAATGTCCAAGATAGAATTCTTCCTCCAAAATCGAAATTCCCAATTGCCCATCAGGCTTATTGTGATTGATTCGATTGCGGCGTTGTTTCGCTCTGATTTCGACAACACCCCATCTGATCTCAAGCGGAGATCTTCTCTGTTTTTCAAGATTTCTGGGAGGTTGAAGTTGTTGGCTAAGAAGTATTCTTTGGCTGTGGTTTTGACGAATCAGGTGGTTGATCTGATGGGTTCTTCTGATGGATTGAATGCTTTGAGAATTGGGAATTTGAAGTTCTTGTGTTCGTCGGGACGACAGGTTTGCCCGGCGCTGGGGCTGGCGTGGGCTAATTGTGTTAATTCAAGATTGTTTCTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGATGGGATGATGAATGGTAGTGAATTACTACAACGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTATGTAATCAAGAGAGAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Coding sequence (CDS)

ATGACGCCGGAAAATCTCCTCAATCTCCTTCAAACCACCCAAAAGTGCACCTTCGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTTGCCTGCAGCTCCCTCACTGAAATCGTCGCCGAAAGCGGCTGCGGCAAAACCCAACTCTGTCTCCAGCTCTCTCTCTGCGCTCAGCTCCCTCTCTCCAATGGCGGCCTCAACGCCTCATCTCTCTACATCCACACCGAATTCCCTTTCCCCTTTCGACGCCTTCAACAACTTTCCCAAGCATTTTCCTCTTCATATCCCCAATTTTCAAACCCCTCCGATCACATCTTTGTCGAACCCGTTCACTCTGTCCACCAACTGTTCGACATAATGTCCAAGATAGAATTCTTCCTCCAAAATCGAAATTCCCAATTGCCCATCAGGCTTATTGTGATTGATTCGATTGCGGCGTTGTTTCGCTCTGATTTCGACAACACCCCATCTGATCTCAAGCGGAGATCTTCTCTGTTTTTCAAGATTTCTGGGAGGTTGAAGTTGTTGGCTAAGAAGTATTCTTTGGCTGTGGTTTTGACGAATCAGGTGGTTGATCTGATGGGTTCTTCTGATGGATTGAATGCTTTGAGAATTGGGAATTTGAAGTTCTTGTGTTCGTCGGGACGACAGGTTTGCCCGGCGCTGGGGCTGGCGTGGGCTAATTGTGTTAATTCAAGATTGTTTCTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGATGGGATGATGAATGGTAGTGAATTACTACAACGAAGAACTAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTATGTAATCAAGAGAGAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Protein sequence

MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDIMSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRNEEVVGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVVGVESQ
Homology
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BLAST of CcUC11G219640 vs. NCBI nr
Match: XP_004150781.1 (DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical protein Csa_021163 [Cucumis sativus])

HSP 1 Score: 555.8 bits (1431), Expect = 2.2e-154
Identity = 280/294 (95.24%), Postives = 287/294 (97.62%), Query Frame = 0 

Query: 1   MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLL+LLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHS HQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKK 180
           M KIE  L+NRNSQLPIRLIVIDSIAALFRSDF+NTPSDLKRRSSLFFKISG+LKLLAKK
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSS R+VCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELLQ-RRTRRWLHVVFAPHLPKSSCEYVIKREGVVGVESQ 294
           EEVVGEG+GMMNGSEL+Q RRTRRWLHVVFAPHLPKSSCEYVI REGVVGVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

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BLAST of CcUC11G219640 vs. NCBI nr
Match: XP_038890688.1 (DNA repair protein XRCC3 homolog [Benincasa hispida])

HSP 1 Score: 552.0 bits (1421), Expect = 3.1e-153
Identity = 275/293 (93.86%), Postives = 284/293 (96.93%), Query Frame = 0 

Query: 1   MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLL+LLQTTQKCTFGCPIIDRS GGGVACSSLTEIVAESGCGKTQLCLQLSL AQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSAGGGVACSSLTEIVAESGCGKTQLCLQLSLYAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHS HQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKK 180
           M KIE FL+N NSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISG+LKLLAK+
Sbjct: 121 MPKIESFLKNSNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRN 240
           YSL VVLTNQVVDL+GSSDGLNALRIGNLKFL SSGRQVCPALGLAWANCVN+RLFLSRN
Sbjct: 181 YSLGVVLTNQVVDLIGSSDGLNALRIGNLKFLSSSGRQVCPALGLAWANCVNTRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVVGVESQ 294
           EE+VGEG+GMMNGSEL+QRRTRRWLHVVFAPHLPKSSCEYVI REGVVGVESQ
Sbjct: 241 EEIVGEGEGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 293

[Close]
BLAST of CcUC11G219640 vs. NCBI nr
Match: XP_008451720.1 (PREDICTED: DNA repair protein XRCC3 homolog [Cucumis melo] >KAA0055575.1 DNA repair protein XRCC3-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 550.1 bits (1416), Expect = 1.2e-152
Identity = 276/293 (94.20%), Postives = 284/293 (96.93%), Query Frame = 0 

Query: 1   MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLL+LLQTTQKCTFGCP IDRSVGGG+ACSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHS HQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKK 180
           M KIE  L+NRNS LPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISG+LKLLAKK
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSS R+VCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELLQRR-TRRWLHVVFAPHLPKSSCEYVIKREGVVGVES 293
           EEVVGEG+GM+NGSEL+QRR TRRWLHVVFAPHLPKSSCEYVI REGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

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BLAST of CcUC11G219640 vs. NCBI nr
Match: TYK01347.1 (DNA repair protein XRCC3-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 547.4 bits (1409), Expect = 7.7e-152
Identity = 274/293 (93.52%), Postives = 284/293 (96.93%), Query Frame = 0 

Query: 1   MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLL+LLQTTQKCTFGCP IDRSVGGG+ACSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLS+AFSSSYPQFSNPSDHIFVEPVHS HQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSEAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKK 180
           M KIE  L+NRNS LPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISG+LKLLAKK
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSS R+VCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELLQRR-TRRWLHVVFAPHLPKSSCEYVIKREGVVGVES 293
           EEVVGEG+GM+NGSEL+QRR TRRWLHVVFAPHLP+SSCEYVI REGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPESSCEYVINREGVVGVES 293

[Close]
BLAST of CcUC11G219640 vs. NCBI nr
Match: KAG7020901.1 (DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 527.3 bits (1357), Expect = 8.3e-146
Identity = 262/293 (89.42%), Postives = 276/293 (94.20%), Query Frame = 0 

Query: 1   MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLL+LLQTTQKCTFGCPIIDRSVGGGVAC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDI 120
           PLS GGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHS  QLFDI
Sbjct: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKK 180
           M KIE FL NR+S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISG+LKLLAK+
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSSGR+VCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVVGVESQ 294
           EEVVGEGDG++N  EL QRRTRRWLHVVFAPHLPKSSCEYVI R+GVVGVESQ
Sbjct: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]
BLAST of CcUC11G219640 vs. ExPASy Swiss-Prot
Match: Q9FKM5 (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 2.1e-99
Identity = 181/297 (60.94%), Postives = 228/297 (76.77%), Query Frame = 0 

Query: 3   PENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPSDHIFVEPVHSVHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP DH+FV+ VHSV  L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLL 182
           FDIM +I+ F+ N  ++ P++LIV+DS+AALFRS+FDNTPSDLK+RSSLFFKISG+LK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFL 242
           A K+ LA+V+TNQV DL+ +SDGL+ LRIGNL++L SSGR+V P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVVGVES 293
           SR++   V    +   N S  + R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]
BLAST of CcUC11G219640 vs. ExPASy Swiss-Prot
Match: Q9CXE6 (DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.0e-35
Identity = 103/287 (35.89%), Postives = 148/287 (51.57%), Query Frame = 0 

Query: 14  QKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLY 73
           Q+ + GCP++D+ +GGG+    +T +   S  GKTQL LQL L  Q P   GGL A ++Y
Sbjct: 80  QRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQYGGLEAGAVY 139

Query: 74  IHTEFPFPFRRLQQL---SQAFSSSYPQ-------FSNPSDHIFVEPVHSVHQLFDIMSK 133
           I TE  FP +RL QL    +   +  P+       FSN   HIF+E    V  L + +SK
Sbjct: 140 ICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSN---HIFIEHAADVDTLLECVSK 199

Query: 134 IEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKKYSL 193
               L +R      RL+V+DSIAA FR +F    S +  R+ L   +   L+ L+  +  
Sbjct: 200 KVPILLSRGM---ARLVVVDSIAAPFRCEFHLQASAI--RAKLLLSLGATLRRLSSTFRS 259

Query: 194 AVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRNEEV 253
            V+  NQV D++     ++       + L +S  ++ PALG+ WAN +  RL + R  E 
Sbjct: 260 PVLCINQVTDMVEDQQSVS-------RSLGASEERLSPALGITWANQLLMRLMVDRTHE- 319

Query: 254 VGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVVGV 291
               D +  G   L R   R L V+FAPHLP SSC Y +  EG+ G+
Sbjct: 320 ----DDVTTG---LPRSPVRTLRVLFAPHLPLSSCCYTVSGEGIRGM 343

[Close]
BLAST of CcUC11G219640 vs. ExPASy Swiss-Prot
Match: Q08DH8 (DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-31
Identity = 98/288 (34.03%), Postives = 139/288 (48.26%), Query Frame = 0 

Query: 14  QKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLY 73
           Q+ + GCP++D  + GG+    +TE+   S  GKTQL LQL L  QLP  +GGL A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQLPPRHGGLGAGAVY 139

Query: 74  IHTEFPFPFRRLQQL---SQAFSSSYPQFSNPSDHIFVEPVHSVHQLF-DIMSKIEFFLQ 133
           + TE  FP RRLQQL    Q   +  P       H+ +  +   HQ+F +  + ++  LQ
Sbjct: 140 VCTEDAFPSRRLQQLIAQQQRLRADVP------GHV-ISKIRFGHQIFIEHAADVDTLLQ 199

Query: 134 NRNSQLPI-------RLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKKYS 193
               ++P+       RL+VIDS+AA FR +FD   + L  R+     +   L+ L+  + 
Sbjct: 200 CVREKVPVLLARGMARLVVIDSVAAPFRCEFDG--AALALRAQRLLALGAELRRLSCAFR 259

Query: 194 LAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRNEE 253
             V+  NQV + +   D            L +    + PALG+ WAN +  RL   R   
Sbjct: 260 SPVLCVNQVTEAVEEQD------------LVAGPPGMSPALGITWANQLLVRLLADRQRP 319

Query: 254 VVGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVVGV 291
                       E       R L VVFAPHLP SSC Y I  EGV G+
Sbjct: 320 -----------EEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGVRGM 335

[Close]
BLAST of CcUC11G219640 vs. ExPASy Swiss-Prot
Match: O43542 (DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.2e-31
Identity = 101/283 (35.69%), Postives = 135/283 (47.70%), Query Frame = 0 

Query: 14  QKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLY 73
           Q+ + GCP++D  + GG+    +TE+   S  GKTQL LQL L  Q P  +GGL A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139

Query: 74  IHTEFPFPFRRLQQL---SQAFSSSYP----QFSNPSDHIFVEPVHSVHQLFDIMSKIEF 133
           I TE  FP +RLQQL        +  P    Q       IF+E V  V  L + ++K   
Sbjct: 140 ICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVP 199

Query: 134 FLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKKYSLAVV 193
            L +R      RL+VIDS+AA FR +FD+  S  + R      +   L+ L+  +   V+
Sbjct: 200 VLLSRGM---ARLVVIDSVAAPFRCEFDSQASAPRARH--LQSLGATLRELSSAFQSPVL 259

Query: 194 LTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRNEEVVGE 253
             NQV + M      +    G L F      +V PALG+ WAN +  RL   R  E    
Sbjct: 260 CINQVTEAMEEQGAAH----GPLGFW---DERVSPALGITWANQLLVRLLADRLRE---- 319

Query: 254 GDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVVG 290
                   E       R L V+ APHLP SSC Y I  EGV G
Sbjct: 320 -------EEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339

[Close]
BLAST of CcUC11G219640 vs. ExPASy Swiss-Prot
Match: O15315 (DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-28
Identity = 89/282 (31.56%), Postives = 144/282 (51.06%), Query Frame = 0 

Query: 23  IDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHTEFPFPF 82
           +D ++ GGVAC SLTEI    GCGKTQ C+ +S+ A LP + GGL  + +YI TE  F  
Sbjct: 90  LDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSA 149

Query: 83  RRLQQLSQAFSSSYPQFSNPSDHIFV--EPVHSVHQLF--DIMSKIEFFLQNRNSQLPIR 142
            RL ++++   S +P++ N  + + +    VH   +L   +++ +IE  L+       I+
Sbjct: 150 ERLVEIAE---SRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIE-SLEEEIISKGIK 209

Query: 143 LIVIDSIAALFRSDFD-NTPSDLKRRSSLFFKISGRLKLLAKKYSLAVVLTNQV------ 202
           L+++DS+A++ R +FD     +LK R+    + +  LK LA+++S+ V+LTNQ+      
Sbjct: 210 LVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSG 269

Query: 203 -----VDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRNEEVVGE 262
                 DL+  +D L      +L    S    V  ALG  W++ VN+RL L   +     
Sbjct: 270 ALASQADLVSPADDL------SLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDS---- 329

Query: 263 GDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVV 289
                          RR + +  +P  P +S  Y IK EG+V
Sbjct: 330 --------------ERRQILIAKSPLAPFTSFVYTIKEEGLV 343

[Close]
BLAST of CcUC11G219640 vs. ExPASy TrEMBL
Match: A0A0A0LK93 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.1e-154
Identity = 280/294 (95.24%), Postives = 287/294 (97.62%), Query Frame = 0 

Query: 1   MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLL+LLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHS HQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKK 180
           M KIE  L+NRNSQLPIRLIVIDSIAALFRSDF+NTPSDLKRRSSLFFKISG+LKLLAKK
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSS R+VCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELLQ-RRTRRWLHVVFAPHLPKSSCEYVIKREGVVGVESQ 294
           EEVVGEG+GMMNGSEL+Q RRTRRWLHVVFAPHLPKSSCEYVI REGVVGVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]
BLAST of CcUC11G219640 vs. ExPASy TrEMBL
Match: A0A5A7UPR6 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00560 PE=4 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.8e-153
Identity = 276/293 (94.20%), Postives = 284/293 (96.93%), Query Frame = 0 

Query: 1   MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLL+LLQTTQKCTFGCP IDRSVGGG+ACSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHS HQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKK 180
           M KIE  L+NRNS LPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISG+LKLLAKK
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSS R+VCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELLQRR-TRRWLHVVFAPHLPKSSCEYVIKREGVVGVES 293
           EEVVGEG+GM+NGSEL+QRR TRRWLHVVFAPHLPKSSCEYVI REGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]
BLAST of CcUC11G219640 vs. ExPASy TrEMBL
Match: A0A1S3BRJ5 (DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.8e-153
Identity = 276/293 (94.20%), Postives = 284/293 (96.93%), Query Frame = 0 

Query: 1   MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLL+LLQTTQKCTFGCP IDRSVGGG+ACSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHS HQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKK 180
           M KIE  L+NRNS LPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISG+LKLLAKK
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSS R+VCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELLQRR-TRRWLHVVFAPHLPKSSCEYVIKREGVVGVES 293
           EEVVGEG+GM+NGSEL+QRR TRRWLHVVFAPHLPKSSCEYVI REGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]
BLAST of CcUC11G219640 vs. ExPASy TrEMBL
Match: A0A5D3BPT7 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00290 PE=4 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 3.7e-152
Identity = 274/293 (93.52%), Postives = 284/293 (96.93%), Query Frame = 0 

Query: 1   MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLL+LLQTTQKCTFGCP IDRSVGGG+ACSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLS+AFSSSYPQFSNPSDHIFVEPVHS HQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSEAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKK 180
           M KIE  L+NRNS LPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISG+LKLLAKK
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSS R+VCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELLQRR-TRRWLHVVFAPHLPKSSCEYVIKREGVVGVES 293
           EEVVGEG+GM+NGSEL+QRR TRRWLHVVFAPHLP+SSCEYVI REGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPESSCEYVINREGVVGVES 293

[Close]
BLAST of CcUC11G219640 vs. ExPASy TrEMBL
Match: A0A6J1FDM2 (DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 PE=4 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 4.0e-146
Identity = 262/293 (89.42%), Postives = 276/293 (94.20%), Query Frame = 0 

Query: 1   MTPENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLL+LLQTTQKCTFGCPIIDRSVGGGVAC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDI 120
           PLS GGL A+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHS  QLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKK 180
           M KIE FL NR+S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISG+LKLLAK+
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSSGR+VCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVVGVESQ 294
           EEVVGEGDG++NG EL QRRTRRWLHVVFAPHLPKSSCEYVI R+GVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]
BLAST of CcUC11G219640 vs. TAIR 10
Match: AT5G57450.1 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 363.6 bits (932), Expect = 1.5e-100
Identity = 181/297 (60.94%), Postives = 228/297 (76.77%), Query Frame = 0 

Query: 3   PENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPSDHIFVEPVHSVHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP DH+FV+ VHSV  L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLL 182
           FDIM +I+ F+ N  ++ P++LIV+DS+AALFRS+FDNTPSDLK+RSSLFFKISG+LK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFL 242
           A K+ LA+V+TNQV DL+ +SDGL+ LRIGNL++L SSGR+V P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVVGVES 293
           SR++   V    +   N S  + R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]
BLAST of CcUC11G219640 vs. TAIR 10
Match: AT5G57450.2 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 363.6 bits (932), Expect = 1.5e-100
Identity = 181/297 (60.94%), Postives = 228/297 (76.77%), Query Frame = 0 

Query: 3   PENLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPSDHIFVEPVHSVHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP DH+FV+ VHSV  L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLL 182
           FDIM +I+ F+ N  ++ P++LIV+DS+AALFRS+FDNTPSDLK+RSSLFFKISG+LK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFL 242
           A K+ LA+V+TNQV DL+ +SDGL+ LRIGNL++L SSGR+V P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGVVGVES 293
           SR++   V    +   N S  + R  +R L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]
BLAST of CcUC11G219640 vs. TAIR 10
Match: AT2G45280.1 (RAS associated with diabetes protein 51C )

HSP 1 Score: 105.1 bits (261), Expect = 9.5e-23
Identity = 82/300 (27.33%), Postives = 140/300 (46.67%), Query Frame = 0 

Query: 5   NLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSN 64
           ++L+  ++  + T  C  +D  +GGG++C  +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 94  DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 153

Query: 65  GGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS--------------NPSD---HIF 124
           GGL   ++YI TE  F   R  Q+++A      +++               P D   +IF
Sbjct: 154 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 213

Query: 125 VEPVHSVHQLFDIMSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLF 184
              V S  +   +++ +E F+        ++++++DSI   FR D+D    DL +R+ + 
Sbjct: 214 YFRVCSYTEQIALVNHLEKFISENKD---VKVVIVDSITFHFRQDYD----DLAQRTRVL 273

Query: 185 FKISGRLKLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAW 244
            +++ +   LAKK+SLAVVL NQV                  KF      Q+  ALG +W
Sbjct: 274 SEMALKFMKLAKKFSLAVVLLNQV----------------TTKF-SEGSFQLALALGDSW 333

Query: 245 ANCVNSRLFLSRNEEVVGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGV 288
           ++   +R+ L              NG E       R+ ++  +P LP +S  Y +   G+
Sbjct: 334 SHSCTNRVIL------------YWNGDE-------RYAYIDKSPSLPSASASYTVTSRGL 350

[Close]
BLAST of CcUC11G219640 vs. TAIR 10
Match: AT2G45280.2 (RAS associated with diabetes protein 51C )

HSP 1 Score: 105.1 bits (261), Expect = 9.5e-23
Identity = 82/300 (27.33%), Postives = 140/300 (46.67%), Query Frame = 0 

Query: 5   NLLNLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSN 64
           ++L+  ++  + T  C  +D  +GGG++C  +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 118 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 177

Query: 65  GGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS--------------NPSD---HIF 124
           GGL   ++YI TE  F   R  Q+++A      +++               P D   +IF
Sbjct: 178 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 237

Query: 125 VEPVHSVHQLFDIMSKIEFFLQNRNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLF 184
              V S  +   +++ +E F+        ++++++DSI   FR D+D    DL +R+ + 
Sbjct: 238 YFRVCSYTEQIALVNHLEKFISENKD---VKVVIVDSITFHFRQDYD----DLAQRTRVL 297

Query: 185 FKISGRLKLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSGRQVCPALGLAW 244
            +++ +   LAKK+SLAVVL NQV                  KF      Q+  ALG +W
Sbjct: 298 SEMALKFMKLAKKFSLAVVLLNQV----------------TTKF-SEGSFQLALALGDSW 357

Query: 245 ANCVNSRLFLSRNEEVVGEGDGMMNGSELLQRRTRRWLHVVFAPHLPKSSCEYVIKREGV 288
           ++   +R+ L              NG E       R+ ++  +P LP +S  Y +   G+
Sbjct: 358 SHSCTNRVIL------------YWNGDE-------RYAYIDKSPSLPSASASYTVTSRGL 374

[Close]
BLAST of CcUC11G219640 vs. TAIR 10
Match: AT5G20850.1 (RAS associated with diabetes protein 51 )

HSP 1 Score: 85.9 bits (211), Expect = 5.9e-17
Identity = 73/271 (26.94%), Postives = 116/271 (42.80%), Query Frame = 0 

Query: 17  TFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHT 76
           T G   +D+ + GG+   S+TE+  E   GKTQLC  L +  QLP+  GG    ++YI  
Sbjct: 106 TSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDA 165

Query: 77  EFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSVHQLFDIMSKIEFFLQNRNSQLP 136
           E  F  +RL Q++  F  +        +  +    ++ HQ   ++      ++ R     
Sbjct: 166 EGTFRPQRLLQIADRFGLNGADVL--ENVAYARAYNTDHQSRLLLEAASMMIETR----- 225

Query: 137 IRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGRLKLLAKKYSLAVVLTNQVVDLMG 196
             L+++DS  AL+R+DF     +L  R     K    L+ LA ++ +AVV+TNQVV  + 
Sbjct: 226 FALLIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 285

Query: 197 SSDGLNALRIGNLKFLCSSGRQVCPALGLAWANCVNSRLFLSRNEEVVGEGDGMMNGSEL 256
            S                +G Q  P  G   A+   +RL L +                 
Sbjct: 286 GS-------------ALFAGPQFKPIGGNIMAHATTTRLALRKG---------------- 337

Query: 257 LQRRTRRWLHVVFAPHLPKSSCEYVIKREGV 288
             R   R   V+ +P LP++   + I  EGV
Sbjct: 346 --RAEERICKVISSPCLPEAEARFQISTEGV 337

The following BLAST results are available for this feature:
BLAST of CcUC11G219640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150781.12.2e-15495.24DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical prot... [more]
XP_038890688.13.1e-15393.86DNA repair protein XRCC3 homolog [Benincasa hispida][more]
XP_008451720.11.2e-15294.20PREDICTED: DNA repair protein XRCC3 homolog [Cucumis melo] >KAA0055575.1 DNA rep... [more]
TYK01347.17.7e-15293.52DNA repair protein XRCC3-like protein [Cucumis melo var. makuwa][more]
KAG7020901.18.3e-14689.42DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. ar... [more]
BLAST of CcUC11G219640 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FKM52.1e-9960.94DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 S... [more]
Q9CXE68.0e-3535.89DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1[more]
Q08DH81.1e-3134.03DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1[more]
O435423.2e-3135.69DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1[more]
O153151.9e-2831.56DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2[more]
BLAST of CcUC11G219640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LK931.1e-15495.24RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4... [more]
A0A5A7UPR65.8e-15394.20DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3BRJ55.8e-15394.20DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV... [more]
A0A5D3BPT73.7e-15293.52DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6J1FDM24.0e-14689.42DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 P... [more]
BLAST of CcUC11G219640 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G57450.11.5e-10060.94homolog of X-ray repair cross complementing 3 (XRCC3) [more]
AT5G57450.21.5e-10060.94homolog of X-ray repair cross complementing 3 (XRCC3) [more]
AT2G45280.19.5e-2327.33RAS associated with diabetes protein 51C [more]
AT2G45280.29.5e-2327.33RAS associated with diabetes protein 51C [more]
AT5G20850.15.9e-1726.94RAS associated with diabetes protein 51 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01874DNAREPAIRADAcoord: 143..167
score: 19.28
coord: 25..53
score: 41.29
NoneNo IPR availablePANTHERPTHR46487DNA REPAIR PROTEIN XRCC3coord: 1..292
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 12..288
e-value: 4.2E-42
score: 144.2
IPR016467DNA recombination and repair protein, RecA-likePIRSFPIRSF005856Rad51coord: 1..293
e-value: 7.9E-52
score: 174.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..290
e-value: 3.6E-63
score: 215.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 15..288
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 12..191
score: 47.253597
IPR033925Rad51/DMC1/RadACDDcd01123Rad51_DMC1_radAcoord: 17..288
e-value: 2.96696E-81
score: 243.26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC11G219640.1CcUC11G219640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045003 double-strand break repair via synthesis-dependent strand annealing
biological_process GO:0051321 meiotic cell cycle
biological_process GO:0071140 resolution of mitotic recombination intermediates
biological_process GO:0090656 t-circle formation
biological_process GO:0000722 telomere maintenance via recombination
biological_process GO:0006281 DNA repair
cellular_component GO:0033065 Rad51C-XRCC3 complex
cellular_component GO:0005657 replication fork
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0000400 four-way junction DNA binding
molecular_function GO:0003677 DNA binding