CcUC11G219530 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC11G219530
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionEthylene-responsive transcription factor ERF071
LocationCicolChr11: 23177929 .. 23178279 (-)
RNA-Seq ExpressionCcUC11G219530
SyntenyCcUC11G219530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAACTGCCATCGCTGCCACCTCCCTCCTACCATCGCTTCCACTACAGCTGTGCAACAGTCTGCCAGACGTCCGCCGACTGCCAGTGGGAGGTCAGAACATGAATGCCGTGGAGTTCGGAGTGAAAGAGACCGAGGAGAAGCCGGAGCAGAAGGTCGCCGTCGTTTCTGCGGCGGAGGAAGAGAACGAACTGCAAAAGCCTTTCAAGGAGTTAATGACGTACGAGAACTTGATGAAGTTCTACTAGATTCCGTGACGAATCTGGCGGAAGAACAGGTGGTCGGCGAACTCTGCAGTTTTGACGACGACGACGGCCTTCACGGCTCTGTATCGTCGTCTGAATTGTGA

mRNA sequence

ATGCCCAACTGCCATCGCTGCCACCTCCCTCCTACCATCGCTTCCACTACAGCTGTGCAACAGTCTGCCAGACGTCCGCCGACTGCCAGTGGGAGGTCAGAACATGAATGCCGTGGAGTTCGGAGTGAAAGAGACCGAGGAGAAGCCGGAGCAGAAGGTCGCCGTCGTTTCTGCGGCGGAGGAAGAGAACGAACTGCAAAAGCCTTTCAAGGAGTTAATGACGTACGAGAACTTGATGAAGTTCTACTAGATTCCGTGACGAATCTGGCGGAAGAACAGGTGGTCGGCGAACTCTGCAGTTTTGACGACGACGACGGCCTTCACGGCTCTGTATCGTCGTCTGAATTGTGA

Coding sequence (CDS)

ATGCCCAACTGCCATCGCTGCCACCTCCCTCCTACCATCGCTTCCACTACAGCTGTGCAACAGTCTGCCAGACGTCCGCCGACTGCCAGTGGGAGGTCAGAACATGAATGCCGTGGAGTTCGGAGTGAAAGAGACCGAGGAGAAGCCGGAGCAGAAGGTCGCCGTCGTTTCTGCGGCGGAGGAAGAGAACGAACTGCAAAAGCCTTTCAAGGAGTTAATGACGTACGAGAACTTGATGAAGTTCTACTAGATTCCGTGACGAATCTGGCGGAAGAACAGGTGGTCGGCGAACTCTGCAGTTTTGACGACGACGACGGCCTTCACGGCTCTGTATCGTCGTCTGAATTGTGA

Protein sequence

MPNCHRCHLPPTIASTTAVQQSARRPPTASGRSEHECRGVRSERDRGEAGAEGRRRFCGGGRERTAKAFQGVNDVRELDEVLLDSVTNLAEEQVVGELCSFDDDDGLHGSVSSSEL
Homology
BLAST of CcUC11G219530 vs. NCBI nr
Match: AHN92190.1 (ERF protein 2 [Citrullus lanatus])

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-04
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 73  NDVRELDEVLL-----------------DSVTNLAEEQVVGELCSFDDDDGLHGSVSSSE 117
           N+V+EL E L+                  +VTN AEEQVVG+L SFDD+DGLHGSVSSSE
Sbjct: 213 NEVQELSEELMAYENYMWFYQIPYLDGQSTVTNPAEEQVVGDLWSFDDEDGLHGSVSSSE 272

BLAST of CcUC11G219530 vs. NCBI nr
Match: XP_038903554.1 (ethylene-responsive transcription factor ERF071 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 85  SVTNLAEEQVVGELCSFDDDDGLHGSVSSSEL 117
           +VTN AEEQVVG+L SFDDDDGLHGSVSSS+L
Sbjct: 260 TVTNPAEEQVVGDLWSFDDDDGLHGSVSSSDL 291

BLAST of CcUC11G219530 vs. NCBI nr
Match: NP_001306244.1 (ethylene-responsive transcription factor ERF071 [Cucumis melo] >KAA0044394.1 ethylene-responsive transcription factor ERF071 [Cucumis melo var. makuwa] >TYK29522.1 ethylene-responsive transcription factor ERF071 [Cucumis melo var. makuwa] >BAD01556.1 ERF-like protein [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-04
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 85  SVTNLAEEQVVGELCSFDDDDGLHGSVSSSEL 117
           +VTN AEEQVVG+L SFDD+DGLHGSVSSSEL
Sbjct: 242 TVTNPAEEQVVGDLWSFDDEDGLHGSVSSSEL 273

BLAST of CcUC11G219530 vs. NCBI nr
Match: XP_004152238.1 (ethylene-responsive transcription factor ERF073 [Cucumis sativus] >KGN52830.1 hypothetical protein Csa_015409 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-04
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 85  SVTNLAEEQVVGELCSFDDDDGLHGSVSSSEL 117
           +VTN AEEQVVG+L SFDD+DGLHGSVSSSEL
Sbjct: 241 TVTNPAEEQVVGDLWSFDDEDGLHGSVSSSEL 272

BLAST of CcUC11G219530 vs. ExPASy TrEMBL
Match: X2KU70 (ERF protein 2 OS=Citrullus lanatus OX=3654 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 73  NDVRELDEVLL-----------------DSVTNLAEEQVVGELCSFDDDDGLHGSVSSSE 117
           N+V+EL E L+                  +VTN AEEQVVG+L SFDD+DGLHGSVSSSE
Sbjct: 213 NEVQELSEELMAYENYMWFYQIPYLDGQSTVTNPAEEQVVGDLWSFDDEDGLHGSVSSSE 272

BLAST of CcUC11G219530 vs. ExPASy TrEMBL
Match: Q75UJ4 (ERF-like protein OS=Cucumis melo OX=3656 GN=CMe-ERF2 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 85  SVTNLAEEQVVGELCSFDDDDGLHGSVSSSEL 117
           +VTN AEEQVVG+L SFDD+DGLHGSVSSSEL
Sbjct: 242 TVTNPAEEQVVGDLWSFDDEDGLHGSVSSSEL 273

BLAST of CcUC11G219530 vs. ExPASy TrEMBL
Match: A0A5A7TMN4 (Ethylene-responsive transcription factor ERF071 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001250 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 85  SVTNLAEEQVVGELCSFDDDDGLHGSVSSSEL 117
           +VTN AEEQVVG+L SFDD+DGLHGSVSSSEL
Sbjct: 242 TVTNPAEEQVVGDLWSFDDEDGLHGSVSSSEL 273

BLAST of CcUC11G219530 vs. ExPASy TrEMBL
Match: A0A0A0KT75 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G001970 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 85  SVTNLAEEQVVGELCSFDDDDGLHGSVSSSEL 117
           +VTN AEEQVVG+L SFDD+DGLHGSVSSSEL
Sbjct: 241 TVTNPAEEQVVGDLWSFDDEDGLHGSVSSSEL 272

BLAST of CcUC11G219530 vs. ExPASy TrEMBL
Match: A0A6J1DMH3 (ethylene-responsive transcription factor ERF071 OS=Momordica charantia OX=3673 GN=LOC111022398 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.8e-04
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0

Query: 85  SVTNLAEEQVVGELCSFDDDDGLHGSVSSSEL 117
           +VTN AEEQVVG+L SFDDDDG HGSVSSS+L
Sbjct: 281 AVTNPAEEQVVGDLWSFDDDDGHHGSVSSSDL 312

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AHN92190.12.1e-0454.10ERF protein 2 [Citrullus lanatus][more]
XP_038903554.12.8e-0484.38ethylene-responsive transcription factor ERF071 [Benincasa hispida][more]
NP_001306244.13.7e-0484.38ethylene-responsive transcription factor ERF071 [Cucumis melo] >KAA0044394.1 eth... [more]
XP_004152238.13.7e-0484.38ethylene-responsive transcription factor ERF073 [Cucumis sativus] >KGN52830.1 hy... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
X2KU701.0e-0454.10ERF protein 2 OS=Citrullus lanatus OX=3654 PE=2 SV=1[more]
Q75UJ41.8e-0484.38ERF-like protein OS=Cucumis melo OX=3656 GN=CMe-ERF2 PE=2 SV=1[more]
A0A5A7TMN41.8e-0484.38Ethylene-responsive transcription factor ERF071 OS=Cucumis melo var. makuwa OX=1... [more]
A0A0A0KT751.8e-0484.38AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G001970 PE=... [more]
A0A6J1DMH38.8e-0481.25ethylene-responsive transcription factor ERF071 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC11G219530.1CcUC11G219530.1mRNA