CcUC11G218730 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC11G218730
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr11: 20656461 .. 20656820 (-)
RNA-Seq ExpressionCcUC11G218730
SyntenyCcUC11G218730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGCATAATTATTCAAAATGCCTAAGAGACATGGCAACTCAGAAGCTTGTTACAATACCAGTCATTGTCATGGTGATATTCGCTTGTTTTGTATCAACAAGTATGCTCTTAAATCACAACTCCTCTAATTCCATAATGTTTTTTTTCTTTTTTGTTAAATATTTTTTAAAACAATGTAATATTTGGTAACATGGCAGCAAAGGAGATGTGTTAAATATGCATTGTGTTCGACCATGCTCTAACCCTTATGATGATGAGTCATATTATAATGATTGCGTCCGAGAGAATAATAGTGCTGGATTTTGTTACCCAAAACTACCTAACATTTCTAATGAAAAAGATTGTTGCTGCAATATTTGA

mRNA sequence

ACGCATAATTATTCAAAATGCCTAAGAGACATGGCAACTCAGAAGCTTGTTACAATACCAGTCATTGTCATGGTGATATTCGCTTGTTTTGTATCAACAAGTATGCTCTTAAATCACAACTCCTCTAATTCCATAATCAAAGGAGATGTGTTAAATATGCATTGTGTTCGACCATGCTCTAACCCTTATGATGATGAGTCATATTATAATGATTGCGTCCGAGAGAATAATAGTGCTGGATTTTGTTACCCAAAACTACCTAACATTTCTAATGAAAAAGATTGTTGCTGCAATATTTGA

Coding sequence (CDS)

ACGCATAATTATTCAAAATGCCTAAGAGACATGGCAACTCAGAAGCTTGTTACAATACCAGTCATTGTCATGGTGATATTCGCTTGTTTTGTATCAACAAGTATGCTCTTAAATCACAACTCCTCTAATTCCATAATCAAAGGAGATGTGTTAAATATGCATTGTGTTCGACCATGCTCTAACCCTTATGATGATGAGTCATATTATAATGATTGCGTCCGAGAGAATAATAGTGCTGGATTTTGTTACCCAAAACTACCTAACATTTCTAATGAAAAAGATTGTTGCTGCAATATTTGA

Protein sequence

THNYSKCLRDMATQKLVTIPVIVMVIFACFVSTSMLLNHNSSNSIIKGDVLNMHCVRPCSNPYDDESYYNDCVRENNSAGFCYPKLPNISNEKDCCCNI
Homology
BLAST of CcUC11G218730 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 11  MATQKLVTIPVIVMVIFACFVSTSMLLNHNSSNSIIKGDVLNMHCVRPCSNPYDDESYYN 70
           MATQKL TI ++V++IFAC  ST+            KGDVLN+HCVRPCS+ YDDES YN
Sbjct: 1   MATQKLATISIVVLMIFACIASTT------------KGDVLNVHCVRPCSDTYDDESCYN 60

Query: 71  DCVRENNSAGFCYPKLPNISNEKDCCCNI 100
           DC++EN  AGFCYPKLP  S +KDCCCN+
Sbjct: 61  DCIQENLGAGFCYPKLP--STDKDCCCNV 75

BLAST of CcUC11G218730 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 11  MATQKLVTIPVIVMVIFACFVSTSMLLNHNSSNSIIKGDVLNMHCVRPCSNPYDDESYYN 70
           MATQKL T+ +++++I AC VST+            KGDVLN++CVRPCS+ YDDES YN
Sbjct: 1   MATQKLATVSIVMLMILACIVSTT------------KGDVLNVNCVRPCSDTYDDESCYN 60

Query: 71  DCVRENNSAGFCYPKLPNISNEKDCCCNI 100
           DC+REN  AGFCYPKLP  S +KDCCCN+
Sbjct: 61  DCIRENLGAGFCYPKLP--STDKDCCCNV 75

BLAST of CcUC11G218730 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 6.1e-16
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 34 SMLLNHNSSNSIIKGDVLNMHCVRPCSNPYDDESYYNDCVRENNSAGFCYPKLPNISNEK 93
          ++L N    + I KGDVLNMHCV+PCS+ YDDES YNDC++EN  AGFCYPKLP  S +K
Sbjct: 2  NVLNNIIFGDMIAKGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLP--STDK 61

Query: 94 DCCCN 99
          DCCC+
Sbjct: 62 DCCCS 64

BLAST of CcUC11G218730 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-15
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0

Query: 11 MATQKLVTIPVIVMVIFACFVSTSMLLNHNSSNSIIKGDVLNMHCVRPCSNPYDDESYYN 70
          MA++KL T+  IVM++F  F S++            KGD+  M C+RPC + +DD+S Y+
Sbjct: 1  MASRKLFTVFAIVMMMF-YFASSA------------KGDMF-MECIRPCVDAFDDDSCYD 60

Query: 71 DCVRENNSAGFCYPKLPNISNEKDCCCN 99
          DCVR N  AGFCYPKLP+++NEKDCCCN
Sbjct: 61 DCVRANKGAGFCYPKLPSVTNEKDCCCN 74

BLAST of CcUC11G218730 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 11 MATQKLVTIPVIVMVIFACFVSTSMLLNHNSSNSIIKGDVLNMHCVRPCSNPYDDESYYN 70
          M TQKL  + ++V V F+CF S+            ++GD L  +CV PCSN   D     
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASS------------MEGDDL-WNCVIPCSNNNGDILCNT 60

Query: 71 DCVRENNSAGFCYPKLPNISNEKDCCCN 99
           C+ ++  AGFC PKLP IS+ K CCCN
Sbjct: 61 ACIEQDEGAGFCVPKLPGISDMKVCCCN 75

BLAST of CcUC11G218730 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.2e-23
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 11  MATQKLVTIPVIVMVIFACFVSTSMLLNHNSSNSIIKGDVLNMHCVRPCSNPYDDESYYN 70
           MATQKL TI ++V++IFAC  ST+            KGDVLN+HCVRPCS+ YDDES YN
Sbjct: 1   MATQKLATISIVVLMIFACIASTT------------KGDVLNVHCVRPCSDTYDDESCYN 60

Query: 71  DCVRENNSAGFCYPKLPNISNEKDCCCNI 100
           DC++EN  AGFCYPKLP  S +KDCCCN+
Sbjct: 61  DCIQENLGAGFCYPKLP--STDKDCCCNV 75

BLAST of CcUC11G218730 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 56/88 (63.64%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 11 MATQKLVTIPVIVMVIFACFVSTSMLLNHNSSNSIIKGDVLNMHCVRPCSNPYDDESYYN 70
          MATQKL TI ++V+VIF C VST+            KGDVLN+HCVRPC + YDDES YN
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTT------------KGDVLNVHCVRPCYDTYDDESCYN 60

Query: 71 DCVRENNSAGFCYPKLPNISNEKDCCCN 99
          DC+REN  AGFCYPKLP  S +KDCCCN
Sbjct: 61 DCIRENLGAGFCYPKLP--STDKDCCCN 74

BLAST of CcUC11G218730 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 47  KGDVLNMHCVRPCSNPYDDESYYNDCVRENNSAGFCYPKLPNISNEKDCCCNI 100
           KGD+LN+HCVRPCS+ YDDES YNDC+REN  AGFCYPKLP  S +KDCCCN+
Sbjct: 4   KGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCNV 54

BLAST of CcUC11G218730 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 11 MATQKLVTIPVIVMVIFACFVSTSMLLNHNSSNSIIKGDVLNMHCVRPCSNPYDDESYYN 70
          M TQKL  + ++V V F+CF S+            ++GD L  +CV PCSN   D     
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASS------------MEGDDL-WNCVIPCSNNNGDILCNT 60

Query: 71 DCVRENNSAGFCYPKLPNISNEKDCCCN 99
           C+ ++  AGFC PKLP IS+ K CCCN
Sbjct: 61 ACIEQDEGAGFCVPKLPGISDMKVCCCN 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61228.11.5e-2261.80hypothetical protein Csa_006463 [Cucumis sativus][more]
KAE8651697.11.6e-2159.55hypothetical protein Csa_006343 [Cucumis sativus][more]
KAE8651701.16.1e-1664.62hypothetical protein Csa_006400, partial [Cucumis sativus][more]
KAG6586428.16.7e-1551.14hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN54497.11.0e-0742.05hypothetical protein Csa_012842 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHG97.2e-2361.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG52.1e-2263.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF53.5e-1775.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R85.0e-0842.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC11G218730.1CcUC11G218730.1mRNA