CcUC11G216320 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G216320
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA-directed RNA polymerase subunit beta''
Location	CicolChr11: 9446277 .. 9456074 (-)
RNA-Seq Expression	CcUC11G216320
Synteny	CcUC11G216320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAAGATCAAACCTCAATTTTTTAGACACAAAAATTTTACGGAGACAGGATTTGAACCCGTGACTTCAAGGTTATGAGCCTTGCGAGCTACCAAGTTGCTCTACCCCGCGATAAAGAGAAGAGCTGTGAACTAATAGACAAACAAAGATTGAATGCACCCTTATACCATATCTGTACAACTAGAATAGTCCATTTATACAGAATGGTAAAGGGGGCCCTCTACGGTCATAGAAATTAATAGAAAAAAGGGATATTTGAATCCTTACCAACTTGATCTTGTTGCCCCAGCAACAAGCATGCATGAACCATTTCACGAAGTATGTGTCCAGAGAGCCTAAAGTCTCGATAGTTAGCTCTCGGTCTTCCGGTTAAAAAACAACGTCGATGAAGACGTGTGGGTGCACTGTTACGCGGTGGGGATTGTAACTTTCCATGAATTTCCCATTTCTCACTCAACGATGGAACTTTGCTTATTTCTTTTTTTAAGGATCGACGAATCAAATGATATTTTTGTTCCAATTTTTGCCTCTTCTTCTCCCTCTGAATTAAACTTTTCCTTGCCATAATGATTCAATTCCTAGTAGTAGCAATGATACAAGTCGGATCCTAGATGTAGAAATATAAGAAGGAAGATCCCCTTATCCATCGAAAGAAATGATATTTTCGCGGATACAACACATACAAAATTAACCAAATTTGCCTGATGTAGAGGCAATCAAGAAAGCCGCATAAGTAAATATATAACCTACTGAAAAGTGGGCTAATCCAACTAATCTTGCTTGCACAATGGAAAGAGCCACTGGTTTATCTCTCCATCGAATCAAATTAGCCAAAGGTGTGCGTTCGTGAGCCCATGCTAAAGTTTCAATCAATTCTTGCCAATATCCGCGCCAGGAAATTAAGAACATAAATCCAGTAGCCCAAACAAGATGTCCAAATAAGAACATCCACGCCCAGACTGATAAACTATTCATACCAAAAGGATTATATCCATTGATAAGTTGTGAAGAGTTTAACCATAGATAATCTCTTAACCATCCCATCAAATAAGTGGAAGATTCATTAAACTGTGAAACGTTACCCTGCCATAATGTGATGTGCTTCCAGTGCCAATAAAAAGTAACCCATCCAATGGTATTTAACATCCAGAAAACTGCCAAATAAAAGGCGTCCCAAGCCGAAATATCACAAGTACCACCTCGTCCCGGACCGTCGCAAGGAAAACTATAACCAAAATCCTTTTTATCCGGCATTAATTTGGAACCACGTGCATCTAAAGCACCTTTTACTAAGATCAATGTAGTTGTATGTAACCCTAAAGCAATAGCATGATGAACCAAGAAGTCTCCGGGCCCTATTGTTAAGAATAGTGAATTACTATTCTCATTAACAGCATTTAACCAACCTGGCAACCATATGCTTCGACCCGCATTGAACGCCGGGCCGCTTGTTGAAGATAAAAGTACATCGAAGCCATATGAAGTTTTACCATGAGCGGATTGAATCCATTGGGCAAATATCGGTTCGATTAAGATTTGTTTTTCCGGAGTACCAAAAGCAAGCATGACATCATTATGAACATAAAGCCCCAAAGTATGGAACCCCAGAAAAAGGCTGGCCCAACTTAAATGGGATATGATAGCTTCTTTATGGTCTAACATTCTTGCCAATACATTATCCTCATTCTGTTCTGGATTGTAATCTCTAATAAAAAATATAGCTCCATGAGCAAAAGCTCCTGTCATAATGAATCCTGCTATGTATTGGTGATGGGTATATAACGCAGCTTGAGTAGTAAAGTCTTGTGCTATGAACGCATAAGCAGGTAAAGCGTACATGTGTTGAGCTACCAAGGAAGTAATAACCCCTAAAGAGGCTAAAGCAAGACCTAATTGAAAATGAAGCGAATTATTGATTGTGTCATAAAGACCTTTATGTCCACGCCCCAATCGTCCCCCNCGAATGGAACGATATAAAGACAAGTAAATCCCTTATGAATTCCAAGGTACTCCTTATTAATTTTAATTAAGGGGATTCGTCAGTCCAAGGGAAATAGACTACTCAAAAATTTCACATTTATTTATTTTTTATGTTGTAATTGATATATTGAATAAAGAACTCTGAAAATCGAAATAAAAAAGAAAAAGAATCAATGAAATCTTGTTTGGTCTTAATTGAGAACTTGAGTAAAGAGTAGTTGGGGGTTTTATAGAATTTGAAAGTGGGAACTCCTTTATTTGATGTAACTACTTGAGCCGGATGAAAAGAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATAGTATCCTATCCAAATTTTTCTTTTGCTAGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCCTTGGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCGGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCAAAAAAATGAAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTCCTATCTAATAGTCAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCGAAGCACTGTTGGTCATATTTCTCGATGTGCTAACTCGCTGTTCGCCTCTGAAACTTGGGCAAGACGTTAAATTATGATTCCATAAAGATGACACAAAAAAGAAAGTAGGAATAAATTATGCTCAATCAATTTCATTAAAAAAAAGAAAAAAAAAAAAAAAGAAAAGATCCCTTATGGAGGGGTAGTAGTGAATTGATGGTGAAGAAACACAATTGTGCTTGTTCCATTTCATCAAAAATATACCTCAACTTTTATTTCTTCAAAATCGGTAAAACCTAAGAATGTCACTTAGGGGAGTAGTGGGTTGCATTTGGTTGAAAGATGAGAGAGAAAGAGAGAACGATGAGAGAAAAGAGAGAACAAGAGACATAAAAGAAAGAAGCTAAATTATTAAAAATATCATTTCTTTTCGATCTGTTCCACTAAAATAGTCAATTTAAAATATAAGAAACAAAAAATAAAATGTAATTTTTCCATACCACTGTACGTTGTTTCTTTATTTTGGATTACTATTTTTAATCTTATAGTTTGATTTTTCAAAATATCGCCATCTTATCGACAGACTATAATATATATTACCTCAATTAATTATATCACACGTCATTAAATAATTTATTAATTTATTATTTTTCTTAACAGCAGCAATACTGCACGTGTTATTCATGAATGAAAAAGCAAAAAAACAAAAGTGTCGCTTTTTCTTTTTTTTTCTTTTTCTTCCAGGAAAATGATTAATGGTGAAGTTAATGGTCTATAATTCGTTACCATCCCCTTCCTTCTCCAACCACTTCTTGTAGTTGTCATACTTTTTTGGACATCTCAAGTTTGGCATTTAAAAAAATAATAATAAAATTAGTTTCTCTTCCTTAATATGCCATTGACCATTCTCCATCTCCACAAACCTTTCTACAATTATATATTGGTAGAAAGGCACACACCATCACACTTAGATACCAAATCAACCTTTATATTAAATCATTATTAAATTTTTATCGATACACGTTTCTATGTCAACTCACTATTTACATTTTATCGTAGAAAAATTCATTAAACTTAAAGAATAAGCAATGAAATGTTCGTAATGTTAATATAATAAAAATAATAGATATTTCACTTGTTTAAAAATCATAAAATAATTATTCATTAATTTAAATTTGTTATTGAGCTCTTATCAAATATAGAAAAATGAACTAGAATATTTGCTATTATTTGTAAATATGTTCAACAGTTTTTTCATTTAAAATAATTTTCCTTTATTATTGAGAAATTATTTTAAATGACAAAATTGCTAAAAATATTTACAAATTATAGAAAATACCACCGACTATCAATAAATTGCAATAATTTGTATCTATCATGATAAAAATAGAAGCAAATAGAAACAAATAATAGTCTATCGTAGATAGACGGTAAAATTTTGCTATCTTTATAAATATTTTAGTTAATTTTTTTATATTTTTAGGGTATGTAAAAAAAATAAGAAATCTTTTGTTTACTCAATTAAAAAATAGAAAATAGTACCTTTTTTGTTCAAAGAATAAAAATAAATACACGGGTTGACCTTTCTTTTTCATATCTTTGTTTTATGATTTTCGGGATGGGGAAAATACGAATCCCCATCGCCCCAATAAACCAAAAAGTTTTTGTTTATTTTTGATTTTATTAGATATTTTATATATTATATATATAATATATAAATATAGAAGATCAAATAGTAAACTGAAACTCTTTATTAAAAATTTAATGAGACATTGAAACGATGACATTAGTTAATTAAGTTAAAACCTTCTTGTTTAATTCTATGAACCCTTAATTTCTTTTCTCGAAATCATTATTACTATGATAGAATATATCCCGCCGAATACATAATGAAATTGGTTTGCAAAATCCTATAAAATAAAACTATTGTTCAATAAAGAAAATTTACACCTTAAATTATTATTGAAATAAATGAAATCTGATAAGATTTTTGTTGGAAACGCTCAAATCCCCTATTTTTTTTCCCTTTTTTCTTTTCTGGAGATTTTTGTTTATGTCACCCTATTTTTTTCATCTTCATTTTTCTGGCGATACTTTCTTAATCAAAATGAAGCAAGAGTGAATTGGGGGAGGAGAGAACGACGTTGCTAAGAATTTTTTTCGTAAAGTTCTGATCGAAACTTTACGGAAAAAGAGACAGAGAGTCGTAATTCCTAGTAAGTTCCGACGCGACCAACTATGATGAGTGAGAACGAGAGTGTGAGAGCGAGAACGAGGCGAGAGTACGAGAAAAAGAGCGAGAGCCTGAGAAAGAGAACGAGAGAGTAAGAATGAGAGCGAGAGCACAAGAACGAGAATGAGAGTGAGAGAGCAAGAGAGAGGGTGCGACCAACTCTGACTCTTGCTCTTTCACTCTCTCACTCTTGTTCTCGCTCTCTTGCTCTCGTTCTCACTTACCAGAGTTGGTCTCATCGGAGCTTTGAACTTACCCGAAATTACTACTATCTATCACTTTTTTTGTAAAGTGCTGATCAGAACTTTACGGGAAAAGTGAGAGAGAGCTTATTCCTTCCCGGTAAGTTCAAACTTACCCAGAAGGAATAAGCACTCTGTCGCATTTTTCGTAAAGTTTCTATCAGAACTTTTTGGAACTTTACAGGAAAAGTGACAGAGAGCTTATTTCTTCCCGATAAGTTCAAACTTACTCGGAAGGAAGCTTCTTGTCACTTTTCCCGTAAAGTTCCAATCAGAACTTTATGGGAGAAGTTCTTAGCAGCGTCGTTCTCTCCTCGCCCAATTCACTCTTGCTTCATTCTAAATTAAGAAAATCTCGCTGGAAAAATGTAGATGAAAAAAATAGGGCAACATAAACAGAAATCTCCAGAAAAGAAAAAAAAGAAATCGTTGGAAAAGAAATTGGAAAGAAGGAGAAGAAGAAGAAGAAGAGCAGAAAAAAAAGAAAAAGAGAAAAGAAAAAAGCTGCAAAAAAGAGAGAATGTAGAAGAAAGAAGGAAGTGGGGTTAAAGTGGTAAATTCACTTAGTGATGACATCAGCAAAAAGCCAAATTTCAAGTATTTTTGAAAGTGAGGCCAGATTTCAAGTGGGCCTCTCAAAATGGGCCATCCGTACAAATATCCCAAAATCTGAGGATGACAAGTAATTCGAGAAACCCTCTAGTTGACCATTTTGATTTTGAATTAACGAATACTCATTTTGATTTTACAAACGAGGGGAAAATGCAAAATGGGGGAAATACTCCTCACTTCTCCGTCCTCTTCTTGTTTTACCAACATCAAAATGTTGATTTCACACACACACATATATGGAAAAGAAAAAGCAATGAAATTGATGATAGACATATGGATCGAGAGAGAAGCATCTGAAAAATCCGAAATTTGAGATTTTCTCTTTTTACTGGGGGTTAATATCATATTTTCTATTACTATTAATCCTATTAATTATTAATATTGAATATAGAAGTAATTCATAATCATCCGGTTAGGATTGATCTAAACCAACTCATTATGTATACAATTCGACATGCCAACTATTAAACAACTTATTAGAAATACAAGACAGCCAATCAGAAATGTCACCAAATCGCCTGCCCTTCGGGGATGCCCTCAGCGTCGAGGAACATGTACTAGGGTGTATGTGTGACTCGTTTAGACCATGGACCGGGACAAAAGAAAAGAAAGTACAAAATTTTTCCCGTATCAGTGATAAGTACCAATGAATAGGATAGAATGAATGGAAGAACTCCGTTCACTACCTAAAAATAAATAAAAAATATTTATCGTATCCTTTTATTGTGTATCAAATTTATGGTTTCTATTGGTGCAAATCCAATCATCTCAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTATGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATCCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTATGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAATGAGTCCTGGAAATAGGATGATTCCTGAAAGAATTTTTATCCAAACATTACTTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATTCGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAATACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGTCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGCAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCCTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAACGATCAATATGTAGAATCTGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGAATTTACATATAGTAATGTCCATCTCTNGTCTGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGAGACAAAAATTTTATGGTCTGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATTTCACATATCCTGCTATTTTCAACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTNGTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGAGACAAAAATTTTATGGTCTGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATTTCACATATCCTGCTATTTTCAACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCTTCC

mRNA sequence

ACCAAGATCAAACCTCAATTTTTTAGACACAAAAATTTTACGGAGACAGGATTTGAACCCGTGACTTCAAGGGGGCCCTCTACGGTCATAGAAATTAATAGAAAAAAGGGATATTTGAATCCTTACCAACTTGATCTTGTTGCCCCAGCAACAAGCATGCATGAACCATTTCACGAAGAAATTAAGAACATAAATCCAGTAGCCCAAACAAGATGTCCAAATAAGAACATCCACGCCCAGACTGATAAACTATTCATACCAAAAGGATTATATCCATTGATAAGTTGTGAAGAAAAACTGCCAAATAAAAGGCGTCCCAAGCCGAAATATCACAAGTACCACCTCGTCCCGGACCGTCGCAAGGAAAACTATAACCAAAATCCTTTTTATCCGGCATTAATTTGGAACCACGTGCATCTAAAGCACCTTTTACTAAGATCAATTGAATTACTATTCTCATTAACAGCATTTAACCAACCTGGCAACCATATGCTTCGACCCGCATTGAACGCCGGGCCGCTTGTTGAAGATAAAAACAGCCAATCAGAAATGTCACCAAATCGCCTGCCCTTCGGGGATGCCCTCAGCGTCGAGGAACATGTACTAGGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTATGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATCCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTATGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAATGAGTCCTGGAAATAGGATGATTCCTGAAAGAATTTTTATCCAAACATTACTTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATTCGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAATACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGTCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGCAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCCTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAACGATCAATATGTAGAATCTGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGAATTTACATATAGTAATGTCCATCTCTNGTCTGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGAGACAAAAATTTTATGGTCTGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATTTCACATATCCTGCTATTTTCAACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCTTCCGTAAATAATGATAAAGTGAGACAAAAATTTTATGGTCTGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATTTCACATATCCTGCTATTTTCAACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCTTCC

Coding sequence (CDS)

ACCAAGATCAAACCTCAATTTTTTAGACACAAAAATTTTACGGAGACAGGATTTGAACCCGTGACTTCAAGGGGGCCCTCTACGGTCATAGAAATTAATAGAAAAAAGGGATATTTGAATCCTTACCAACTTGATCTTGTTGCCCCAGCAACAAGCATGCATGAACCATTTCACGAAGAAATTAAGAACATAAATCCAGTAGCCCAAACAAGATGTCCAAATAAGAACATCCACGCCCAGACTGATAAACTATTCATACCAAAAGGATTATATCCATTGATAAGTTGTGAAGAAAAACTGCCAAATAAAAGGCGTCCCAAGCCGAAATATCACAAGTACCACCTCGTCCCGGACCGTCGCAAGGAAAACTATAACCAAAATCCTTTTTATCCGGCATTAATTTGGAACCACGTGCATCTAAAGCACCTTTTACTAAGATCAATTGAATTACTATTCTCATTAACAGCATTTAACCAACCTGGCAACCATATGCTTCGACCCGCATTGAACGCCGGGCCGCTTGTTGAAGATAAAAACAGCCAATCAGAAATGTCACCAAATCGCCTGCCCTTCGGGGATGCCCTCAGCGTCGAGGAACATGTACTAGGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTATGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATCCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTATGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAATGAGTCCTGGAAATAGGATGATTCCTGAAAGAATTTTTATCCAAACATTACTTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATTCGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGGACTCCCTTTACTTGTAGGAATACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGTCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGCAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCCTTTTTATGTTATATAGACTTGTATGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAACGATCAATATGTAGAATCTGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGAATTTACATATAGTAATGTCCATCTCTNGTCTGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGATTCAGAGGGAGAAATGCATTGGAGTACCGACGTGTATCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGAAGATATATTTCTAGCCTTTCAGTAAATAATGATAAAGTGAGACAAAAATTTTATGGTCTGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATTTCACATATCCTGCTATTTTCAACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCTTCCGTAAATAATGATAAAGTGAGACAAAAATTTTATGGTCTGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATTTCACATATCCTGCTATTTTCAACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCTTCC

Protein sequence

TKIKPQFFRHKNFTETGFEPVTSRGPSTVIEINRKKGYLNPYQLDLVAPATSMHEPFHEEIKNINPVAQTRCPNKNIHAQTDKLFIPKGLYPLISCEEKLPNKRRPKPKYHKYHLVPDRRKENYNQNPFYPALIWNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDALSVEEHVLGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPGYLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLLAKRRRNGFIIQFESLQEREKELPPPS

Homology

[Close]

BLAST of CcUC11G216320 vs. NCBI nr
Match: YP_009431632.1 (RNA polymerase beta'' subunit [Citrullus rehmii] >ASY96233.1 RNA polymerase beta'' subunit [Citrullus rehmii])

HSP 1 Score: 883.6 bits (2282), Expect = 1.2e-252
Identity = 452/566 (79.86%), Postives = 469/566 (82.86%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL
Sbjct: 572 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKELPPPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELPPPS 597

[Close]

BLAST of CcUC11G216320 vs. NCBI nr
Match: YP_009420784.1 (RNA polymerase beta'' subunit [Citrullus colocynthis] >ASP44453.1 RNA polymerase beta'' subunit [Citrullus colocynthis])

HSP 1 Score: 883.6 bits (2282), Expect = 1.2e-252
Identity = 452/566 (79.86%), Postives = 469/566 (82.86%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL
Sbjct: 572 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKELPPPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELPPPS 597

[Close]

BLAST of CcUC11G216320 vs. NCBI nr
Match: APW82621.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 881.3 bits (2276), Expect = 6.0e-252
Identity = 451/566 (79.68%), Postives = 468/566 (82.69%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL
Sbjct: 572 RYISSLSVNNDKVRQKFYGRDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKELPPPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELPPPS 597

[Close]

BLAST of CcUC11G216320 vs. NCBI nr
Match: YP_009431547.1 (RNA polymerase beta'' subunit [Citrullus amarus] >APW82536.1 RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris] >ASY96148.1 RNA polymerase beta'' subunit [Citrullus amarus])

HSP 1 Score: 881.3 bits (2276), Expect = 6.0e-252
Identity = 451/566 (79.68%), Postives = 468/566 (82.69%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL
Sbjct: 572 RYISSLSVNNDKVRQKFYGRDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKELPPPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELPPPS 597

[Close]

BLAST of CcUC11G216320 vs. NCBI nr
Match: APW82451.1 (RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 881.3 bits (2276), Expect = 6.0e-252
Identity = 451/566 (79.68%), Postives = 468/566 (82.69%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL
Sbjct: 572 RYISSLSVNNDKVRQKFYGRDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKELPPPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELPPPS 597

[Close]

BLAST of CcUC11G216320 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 861.7 bits (2225), Expect = 6.5e-249
Identity = 441/566 (77.92%), Postives = 463/566 (81.80%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGI +SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           G+RNQDIGIGLINRFITFQTQPISIRTPFTCR+TSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCS+VPFSLYKDQDQINVHSL VER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSLVPFSLYKDQDQINVHSLCVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKV QKFYG DLSGKNE+GIPDYSELNPILCTGQSN TYPAIF+GNSDLL
Sbjct: 572 RYISSLSVNNDKVGQKFYGPDLSGKNENGIPDYSELNPILCTGQSNLTYPAIFHGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKEL PPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELRPPS 597

[Close]

BLAST of CcUC11G216320 vs. ExPASy Swiss-Prot
Match: B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 765.4 bits (1975), Expect = 6.3e-220
Identity = 394/562 (70.11%), Postives = 430/562 (76.51%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + +  +   +       G+ 
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNLNFRMTEPFNPVHIMSFSGARGNT 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGT RGIS+SP N M+PERIFIQT +GRVLAD+IYMG RCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIFIQTFIGRVLADNIYMGLRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
            IRNQDIGIGL NRFITF+TQ ISIRTPFTCR+TSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 AIRNQDIGIGLANRFITFRTQTISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHP RTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPIRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTI+S+DIIHNVTIPPKS LLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIKSQDIIHNVTIPPKSFLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAG YTLN KE+VRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGAYTLNFKEKVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSG SC  S+VPFSL+KDQDQ+NVHSLSV+R
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGSSCRSSIVPFSLHKDQDQMNVHSLSVKR 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISS SVNND+V+ KF+  D SGK ESGIPDYSELN  +CTG  N  Y  I   NSDLL
Sbjct: 572 RYISSPSVNNDQVKHKFFSSDFSGKKESGIPDYSELNRSICTGHCNLIYSTILYKNSDLL 593

Query: 675 AKRRRNGFIIQFESLQEREKEL 696
           AKRRRN FII F+S+QEREKEL
Sbjct: 632 AKRRRNKFIIPFQSIQEREKEL 593

[Close]

BLAST of CcUC11G216320 vs. ExPASy Swiss-Prot
Match: Q0ZJ30 (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 765.4 bits (1975), Expect = 6.3e-220
Identity = 397/566 (70.14%), Postives = 432/566 (76.33%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNTNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SP N MIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
            IRNQDIGIGL+NRFITFQ Q ISIRTPFTC++TSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 AIRNQDIGIGLVNRFITFQAQTISIRTPFTCKSTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNED VHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDWVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESE IIHNV IPPKS LLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEGIIHNVNIPPKSFLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYT N KERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTFNFKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTY NVHLLPKTSHLWILSGGSC  S+VPFS++KDQDQ++V SLSVER
Sbjct: 512 MHWSTDVYHAPEFTYGNVHLLPKTSHLWILSGGSCRFSIVPFSIHKDQDQMSVRSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYIS+ SV ND+V  +F+  DLSGK E  IP YSELN I+ TG+ N   PAI + NSDLL
Sbjct: 572 RYISNPSVTNDQVIHEFFSSDLSGKKEGRIPAYSELNRIIYTGRYNLIDPAILHENSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRN FII F+S+QE EKEL PPS
Sbjct: 632 AKRRRNRFIIPFQSIQEGEKELMPPS 597

[Close]

BLAST of CcUC11G216320 vs. ExPASy Swiss-Prot
Match: B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 759.2 bits (1959), Expect = 4.5e-218
Identity = 395/566 (69.79%), Postives = 433/566 (76.50%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    V D  +   +       G+A
Sbjct: 88  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRVTDPFNPVHIMSFSGARGNA 147

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 148 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 207

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SP NR +PERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 208 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPKNRTMPERIFIQTLIGRVLADDIYMGPRCI 267

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
            IRNQDIGIGL+NRFITF+TQ ISIRTPFTCR+TSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 268 AIRNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGI 327

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+R+PSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 328 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRSPSNGKIKFNEDLVHPTRTRHGHPAFL 387

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDL V IESEDIIHNVTIPPKS LLVQNDQYVE                         
Sbjct: 388 CYIDLSVVIESEDIIHNVTIPPKSFLLVQNDQYVE------------------------- 447

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLN KERVRKHIYS+SEGE
Sbjct: 448 ----------------------------SEQVIAEIRAGTYTLNYKERVRKHIYSNSEGE 507

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGS   S+VPFSL+KDQDQ+N+HSLSVE+
Sbjct: 508 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSSRSSLVPFSLHKDQDQMNIHSLSVEQ 567

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
             ISSL+VNND+ R KF+  + S K + GIPDYSE + IL TG  N  Y A  + NSDLL
Sbjct: 568 ESISSLAVNNDQGRHKFFSSNFSDKKKCGIPDYSEFHRILDTGHCNLIYFASLHENSDLL 593

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRN FII F+S+QE+EKEL P S
Sbjct: 628 AKRRRNRFIIPFQSIQEQEKELMPRS 593

[Close]

BLAST of CcUC11G216320 vs. ExPASy Swiss-Prot
Match: Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 756.5 bits (1952), Expect = 2.9e-217
Identity = 393/567 (69.31%), Postives = 431/567 (76.01%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEVWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRG+S+SP N M+PERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGVSVSPRNGMMPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
            IRNQDIGIGL+NRFITF+TQPISIRTPFTCR+TSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 AIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFN+DLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNDDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           C IDLYVTIESEDI+HNVTIPPKS LLVQN+QYVE                         
Sbjct: 392 CSIDLYVTIESEDILHNVTIPPKSFLLVQNNQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYT NLKERVRKHIYS+SEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTFNLKERVRKHIYSESEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC  S VPFSLYKDQDQ+N+ S   ER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCRSSRVPFSLYKDQDQMNLRSTERER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGK-NESGIPDYSELNPILCTGQSNFTYPAIFNGNSDL 674
           RYISSLSVNND++R +    D SGK  E  IPDYSELN I+     N  YP  F+ NSDL
Sbjct: 572 RYISSLSVNNDQMRYELCSSDFSGKIKEDRIPDYSELNRIISIVHCNLKYPTTFDENSDL 598

Query: 675 LAKRRRNGFIIQFESLQEREKELPPPS 700
           LAKRRRN F+I  +S+QER+KEL P S
Sbjct: 632 LAKRRRNRFLIPLQSIQERKKELMPHS 598

[Close]

BLAST of CcUC11G216320 vs. ExPASy TrEMBL
Match: A0A249RX89 (DNA-directed RNA polymerase subunit beta'' OS=Citrullus rehmii OX=260675 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 883.6 bits (2282), Expect = 5.9e-253
Identity = 452/566 (79.86%), Postives = 469/566 (82.86%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL
Sbjct: 572 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKELPPPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELPPPS 597

[Close]

BLAST of CcUC11G216320 vs. ExPASy TrEMBL
Match: A0A343F273 (DNA-directed RNA polymerase subunit beta'' OS=Citrullus colocynthis OX=252529 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 883.6 bits (2282), Expect = 5.9e-253
Identity = 452/566 (79.86%), Postives = 469/566 (82.86%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL
Sbjct: 572 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKELPPPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELPPPS 597

[Close]

BLAST of CcUC11G216320 vs. ExPASy TrEMBL
Match: A0A1P8LFL6 (DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 881.3 bits (2276), Expect = 2.9e-252
Identity = 451/566 (79.68%), Postives = 468/566 (82.69%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL
Sbjct: 572 RYISSLSVNNDKVRQKFYGRDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKELPPPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELPPPS 597

[Close]

BLAST of CcUC11G216320 vs. ExPASy TrEMBL
Match: A0A1P8LF52 (DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 881.3 bits (2276), Expect = 2.9e-252
Identity = 451/566 (79.68%), Postives = 468/566 (82.69%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL
Sbjct: 572 RYISSLSVNNDKVRQKFYGRDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKELPPPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELPPPS 597

[Close]

BLAST of CcUC11G216320 vs. ExPASy TrEMBL
Match: A0A343A8A0 (DNA-directed RNA polymerase subunit beta'' OS=Citrullus lanatus OX=3654 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 881.3 bits (2276), Expect = 2.9e-252
Identity = 451/566 (79.68%), Postives = 468/566 (82.69%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   +       G+A
Sbjct: 92  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHIMSFSGARGNA 151

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 152 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 211

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCI 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SPGNRMIPERIFIQTL+GRVLADDIYMGPRCI
Sbjct: 212 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCI 271

Query: 315 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVVGI 374
           GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGE VGI
Sbjct: 272 GIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEAVGI 331

Query: 375 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 434
           IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL
Sbjct: 332 IAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFL 391

Query: 435 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHI 494
           CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE                         
Sbjct: 392 CYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVE------------------------- 451

Query: 495 YSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 554
                                       SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE
Sbjct: 452 ----------------------------SEQVIAEIRAGTYTLNLKERVRKHIYSDSEGE 511

Query: 555 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 614
           MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER
Sbjct: 512 MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSVER 571

Query: 615 RYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 674
           RYISSLSVNNDKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL
Sbjct: 572 RYISSLSVNNDKVRQKFYGRDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSDLL 597

Query: 675 AKRRRNGFIIQFESLQEREKELPPPS 700
           AKRRRNGFIIQFESLQEREKELPPPS
Sbjct: 632 AKRRRNGFIIQFESLQEREKELPPPS 597

[Close]

BLAST of CcUC11G216320 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 726.9 bits (1875), Expect = 1.8e-209
Identity = 381/568 (67.08%), Postives = 423/568 (74.47%), Query Frame = 0


Query: 135 WNHVHLKHLLLRSIELLFSLTAFNQPGNHMLRPALNAGPLVEDKNSQSEMSPNRLPFGDA 194
           + +VH    L +SIE+ ++ + +       LR  +N    + D  +   M       G+A
Sbjct: 88  YGNVHAVEKLRQSIEIWYATSEY-------LRQEMNPNFRMTDPFNPVHMMSFSGARGNA 147

Query: 195 LSVEEHV-LGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPG 254
             V + V + GLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSD G
Sbjct: 148 SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAG 207

Query: 255 YLTRRLVEVVQHIVVCRTDCGTIRGISMSP--GNRMIPERIFIQTLLGRVLADDIYMGPR 314
           YLTRRLVEVVQHIVV RTDCGTIRGIS+SP   NRM+ ERIFIQTL+GRVLADDIY+G R
Sbjct: 208 YLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSERIFIQTLIGRVLADDIYIGSR 267

Query: 315 CIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSPTHGDLVELGEVV 374
           C+  RNQD+GIGL+NR ITF TQ ISIRTPFTCR+TSWICRLCYGRSPTHGDLVELGE V
Sbjct: 268 CVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAV 327

Query: 375 GIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPA 434
           GIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP NGKIKFNEDLVHPTRTRHGHPA
Sbjct: 328 GIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHPTRTRHGHPA 387

Query: 435 FLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRK 494
           FLCYIDL V IESEDIIH+VTIPPKS LLVQNDQYVE                       
Sbjct: 388 FLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVE----------------------- 447

Query: 495 HIYSDSEGEMHWSTDVYHAPEFTYSNVHLXSEQVIAEIRAGTYTLNLKERVRKHIYSDSE 554
                                         SEQVIAEIR GTYT + KERVRK+IYSDSE
Sbjct: 448 ------------------------------SEQVIAEIREGTYTFHFKERVRKYIYSDSE 507

Query: 555 GEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVHSLSV 614
           GEMHWSTDV HAPEFTYSNVHLLPKTSHLWILSGGSCG S++ FS++KDQDQ+N+  LS 
Sbjct: 508 GEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLIRFSIHKDQDQMNIPFLSA 567

Query: 615 ERRYISSLSVNNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFNGNSD 674
           ER+ ISSLSVNND+V QKF+  D +   + GI DYSELN  L T   N  Y AIF+ NSD
Sbjct: 568 ERKSISSLSVNNDQVSQKFFSSDFADPKKLGIYDYSELNGNLGTSHYNLIYSAIFHENSD 595

Query: 675 LLAKRRRNGFIIQFESLQEREKELPPPS 700
           LLAKRRRN F+I F+S+QE+EKE  P S
Sbjct: 628 LLAKRRRNRFLIPFQSIQEQEKEFIPQS 595

[Close]

BLAST of CcUC11G216320 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-12
Identity = 59/197 (29.95%), Postives = 86/197 (43.65%), Query Frame = 0


Query: 218  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPGYLTRRLVEVVQHIVVCRTDC---- 277
            I      GL   EY   C   R+G+VDTAV+TS  GYL R L++ ++ + V   DC    
Sbjct: 995  ISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKV-NYDCTVRD 1054

Query: 278  --GTIRGISMSPGNRMIPERIFIQTLLGRVLADDIYMGPRCIGIRNQDIGIGLINRFITF 337
              G+I           +    FI+      +  D+ +  +C    ++D+  G  +     
Sbjct: 1055 ADGSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVL-QKC----SEDMLSGASS---YI 1114

Query: 338  QTQPISIR---------TPFTCRNTSWICR----LCYGRSPTHGDLVELGEVVGIIAGQS 396
               PIS++          P   R  S   R    L   +S     L + GE VG++A QS
Sbjct: 1115 SDLPISLKKGAEKFVEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQS 1174

[Close]

BLAST of CcUC11G216320 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 66.6 bits (161), Expect = 9.9e-11
Identity = 54/217 (24.88%), Postives = 95/217 (43.78%), Query Frame = 0


Query: 218  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPGYLTRRLVEVVQHIVV-----CRTD 277
            + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V      R  
Sbjct: 835  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNA 894

Query: 278  CGTIRGIS-----MSP-------GNRMIPERIFIQTL----------------LGRVLAD 337
             G I   +     M P       G  +   R+F++                  L +   +
Sbjct: 895  SGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEE 954

Query: 338  DIYMGPR---CIG--IRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSP 397
            ++    +   C    +++    + L+        Q +   +  T +      ++C  R  
Sbjct: 955  ELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR-- 1014

[Close]

BLAST of CcUC11G216320 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 66.6 bits (161), Expect = 9.9e-11
Identity = 54/217 (24.88%), Postives = 95/217 (43.78%), Query Frame = 0


Query: 218  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDPGYLTRRLVEVVQHIVV-----CRTD 277
            + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V      R  
Sbjct: 852  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNA 911

Query: 278  CGTIRGIS-----MSP-------GNRMIPERIFIQTL----------------LGRVLAD 337
             G I   +     M P       G  +   R+F++                  L +   +
Sbjct: 912  SGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEE 971

Query: 338  DIYMGPR---CIG--IRNQDIGIGLINRFITFQTQPISIRTPFTCRNTSWICRLCYGRSP 397
            ++    +   C    +++    + L+        Q +   +  T +      ++C  R  
Sbjct: 972  ELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR-- 1031

[Close]

BLAST of CcUC11G216320 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 54.3 bits (129), Expect = 5.1e-07
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 181 QSEMSPNRLPFGDALSVEEHVLGGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARK 240
           Q  +   R+PFG     +   L     D  G      ++++   GL+  E+     G R+
Sbjct: 786 QQNVEGKRIPFG----FDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 845

Query: 241 GVVDTAVRTSDPGYLTRRLVEVVQHIVVCRTDCGTIR 278
           G++DTAV+TS+ GY+ RRLV+ ++ I+V + D GT+R
Sbjct: 846 GLIDTAVKTSETGYIQRRLVKAMEDIMV-KYD-GTVR 876

HSP 2 Score: 47.4 bits (111), Expect = 6.2e-05
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 364  LVELGEVVGIIAGQSIGEPGTQLTLRTFHTGGV 397
            LV  GE++G +A QSIGEP TQ+TL TFH  GV
Sbjct: 1077 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1109

The following BLAST results are available for this feature:

BLAST of CcUC11G216320 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009431632.1	1.2e-252	79.86	RNA polymerase beta'' subunit [Citrullus rehmii] >ASY96233.1 RNA polymerase beta...	[more]
YP_009420784.1	1.2e-252	79.86	RNA polymerase beta'' subunit [Citrullus colocynthis] >ASP44453.1 RNA polymerase...	[more]
APW82621.1	6.0e-252	79.68	RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]	[more]
YP_009431547.1	6.0e-252	79.68	RNA polymerase beta'' subunit [Citrullus amarus] >APW82536.1 RNA polymerase beta...	[more]
APW82451.1	6.0e-252	79.68	RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]	[more]

BLAST of CcUC11G216320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	6.5e-249	77.92	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
B1NWE0	6.3e-220	70.11	DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2...	[more]
Q0ZJ30	6.3e-220	70.14	DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 P...	[more]
B1A925	4.5e-218	69.79	DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=...	[more]
Q49L08	2.9e-217	69.31	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]

BLAST of CcUC11G216320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RX89	5.9e-253	79.86	DNA-directed RNA polymerase subunit beta'' OS=Citrullus rehmii OX=260675 GN=rpoC...	[more]
A0A343F273	5.9e-253	79.86	DNA-directed RNA polymerase subunit beta'' OS=Citrullus colocynthis OX=252529 GN...	[more]
A0A1P8LFL6	2.9e-252	79.68	DNA-directed RNA polymerase OS=Citrullus mucosospermus OX=519315 GN=rpoC2 PE=3 S...	[more]
A0A1P8LF52	2.9e-252	79.68	DNA-directed RNA polymerase OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rp...	[more]
A0A343A8A0	2.9e-252	79.68	DNA-directed RNA polymerase subunit beta'' OS=Citrullus lanatus OX=3654 GN=rpoC2...	[more]

BLAST of CcUC11G216320 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	1.8e-209	67.08	DNA-directed RNA polymerase family protein	[more]
AT3G57660.1	2.4e-12	29.95	nuclear RNA polymerase A1	[more]
AT5G60040.1	9.9e-11	24.88	nuclear RNA polymerase C1	[more]
AT5G60040.2	9.9e-11	24.88	nuclear RNA polymerase C1	[more]
AT4G35800.1	5.1e-07	32.99	RNA polymerase II large subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.250.2940		coord: 213..262 e-value: 4.3E-19 score: 69.7
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 685..775
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 203..520
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 522..695
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 203..520
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 685..775
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 522..695
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 204..588
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 225..417 e-value: 2.3E-38 score: 132.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G216320.1	CcUC11G216320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding