CcUC11G216310 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC11G216310
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionProtein TIC 214
LocationCicolChr11: 9445081 .. 9448102 (+)
RNA-Seq ExpressionCcUC11G216310
SyntenyCcUC11G216310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTACCCCCGGGAACAGATCCAGTGGAGACGGGGTGGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCCTTATCTTTTGATTTTTTCTTTTTCGTTAATGGGTTAAGGGCGGGGGTTCCGTTATAAATTAAATATAGTATACCCAACCCGAATCAGCATATTTTTTTGTTTTACGCCCCGTAATTCTTCCTCAGCCAGGCTCGGGCAGAATAGCAGAGCAAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATATGTTTGCTCGCGGTAATTGTGACCTCTCGGGAGAATCGATGACTGCATCAAAGATGCACTTGCTAGTACTAGTACATCTGAGAATTCTTAATTGGCTAGTTGTAAATAGACCCAGACTGTGGAACAAAGGATTATCCCGGACCTACACCGAGGTATTGACGGTGATTCTCAAATATCGCAGAACAGAATTTGATACGATGAGATAGAATGCAATAGAAACAAAGACACAGGGAACGGGTTACCTACTCTTAACGGTCAAAGCGAACCCTTTCATTCCGAATTCTTTAATTCGGAATGAATCAAATCTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGTAAATTAGGTCTCAGAGAATTCAATTCCCGTTCTCAACCCATGACCAATATGAGCTCGAGGTTTCCTTCGTAACTCCCGGAACTTCTTCGTAGTGGCTCCGTTCCATGCCTCATTTCATAGAGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCCATATGCCAATTCCATTCATTTAATATCCCTGTGGTGTCATTGAGATAAGAGATGTCGTTTCTAGTCTATCTGTTTCTATTTCTATATATATGGAAAGTTAAAAAATCATCATATAATAATCCAAAAATTGCAATAGAAAAGAAAAAGGGAGGTTCGTGATGANATCGAAATAAGCAAGAATACTATTTCTACGAAAAATACCATTTATGGGTATTTCAATCGAAATACCGGAAGGGGGTGGTAGTTCTTTTTCTCGTTCTTGAAGTGATTCAAATTGAATGATGAATCCATTTCGTCGCCTCTTTGCCAATAAATCAGAATTACCGTTGAAAATAGCAGGATATGTGAAATTAGATTGACCCGTACATAGGATTGGATTAAGTTCTGAATAATCAGGAATTCCGCTTTCGTTTTTACCAGAGAGATCCAGACCATAAAATTTTTGTCTCACTTTATCATTATTTACTGAAAGGCTAGAAATATATCTTCTTTCGACAGAAAGAGAATGAACGTTAATTTGATCTTGATCCTTGTAGAGTGAAAAAGGGACTACACTGCATCCGCACGAACCTCCTGATAATATCCATAAATGACTTGTTTTTGGTAAGAGATGGACATTACTATATGTAAATTCGGGTGCATGATACACGTCGGTACTCCAATGCATTTCTCCCTCTGAATCAGAATAACNACCATTTATGGGTATTTCAATCGAAATACCGGAAGGGGGTGGTAGTTCTTTTTCTCGTTCTTGAAGTGATTCAAATTGAATGATGAATCCATTTCGTCGCCTCTTTGCCAATAAATCAGAATTACCGTTGAAAATAGCAGGATATGTGAAATTAGATTGACCCGTACATAGGATTGGATTAAGTTCTGAATAATCAGGAATTCCGCTTTCGTTTTTACCAGAGAGATCCAGACCATAAAATTTTTGTCTCACTTTATCATTATTTACTGAAAGGCTAGAAATATATCTTCTTTCGACAGAAAGAGAATGAACGTTAATTTGATCTTGATCCTTGTAGAGTGAAAAAGGGACTACACTGCATCCGCACGAACCTCCTGATAATATCCATAAATGACTTGTTTTTGGTAAGAGATGGACATTACTATATGTAAATTCGGGTGCATGATACACGTCGGTACTCCAATGCATTTCTCCCTCTGAATCAGAATAAATATGTTTTCGAACCCTCTCTTTTAAATTAAGAGTGTATGTTCCCGCGCGAATCTCAGCAATCACTTGTTCAGACNAGAGATGGACATTACTATATGTAAATTCGGGTGCATGATACACGTCGGTACTCCAATGCATTTCTCCCTCTGAATCAGAATAAATATGTTTTCGAACCCTCTCTTTTAAATTAAGAGTGTATGTTCCCGCGCGAATCTCAGCAATCACTTGTTCAGATTCTACATATTGATCGTTTTGAACTAAAAGTAAACTTTTTGGTGGAATAGTGACGTTATGTATAATATCCTCACTCTCAATAGTTACATACAAGTCTATATAACATAAAAAGGCAGGATGCCCATGGCGTGTACGTGTGGGATGAACCAAATCCTCATTGAATTTTATTTTGCCATTAGAAGGAGCTCGTATATGTTCTGCAGTCCCCCCTGTGAATACTCCGCCGGTATGAAAAGTTCTTAATGTTAGTTGAGTACCCGGTTCTCCAATAGATTGACCCGCAATAATACCTACGACTTCTCCCAATTCGACCAGGTCCCCGTGAGTAGGACTTCGTCCATAACATAATCGGCAGATCCAAGATGTATTCCTACAAGTAAAGGGAGTCCGAATAGATATTGGTTGTGTTTGAAAGGTTATGAATCGATTGATAAGTCCAATACCAATATCTTGATTTCGAATGCCAATGCATCGCGGGCCCATATATATATCGTCCGCTAATACACGACCAAGTAATGTTTGGATAAAAATTCTTTCAGGAATCATCCTATTTCCAGGACTCATTGAAATCCCTCGGATGGTTCCACAATCGGTTCTACATACAACAATGTGTTGAACTACTTCAACAAGTCTGCGTGTAA

mRNA sequence

GGTACCCCCGGGAACAGATCCAGTGGAGACGGGGTGGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGAGTGAAAAAGGGACTACACTGCATCCGCACGAACCTCCTGATAATATCCATAAATGACTTGTTTTTGTTGAGTACCCGGTTCTCCAATAGATTGACCCGCAATAATACCTACGACTTCTCCCAATTCGACCAGGTCCCCGAATCATCCTATTTCCAGGACTCATTGAAATCCCTCGGATGGTTCCACAATCGGTTCTACATACAACAATGTGTTGAACTACTTCAACAAGTCTGCGTGTAA

Coding sequence (CDS)

GGTACCCCCGGGAACAGATCCAGTGGAGACGGGGTGGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGAGTGAAAAAGGGACTACACTGCATCCGCACGAACCTCCTGATAATATCCATAAATGACTTGTTTTTGTTGAGTACCCGGTTCTCCAATAGATTGACCCGCAATAATACCTACGACTTCTCCCAATTCGACCAGGTCCCCGAATCATCCTATTTCCAGGACTCATTGAAATCCCTCGGATGGTTCCACAATCGGTTCTACATACAACAATGTGTTGAACTACTTCAACAAGTCTGCGTGTAA

Protein sequence

GTPGNRSSGDGVGPVAQRIRARGYEPRCRGVKKGLHCIRTNLLIISINDLFLLSTRFSNRLTRNNTYDFSQFDQVPESSYFQDSLKSLGWFHNRFYIQQCVELLQQVCV
Homology
[Close]
BLAST of CcUC11G216310 vs. NCBI nr
Match: GFQ03364.1 (hypothetical protein PHJA_002480200 [Phtheirospermum japonicum])

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-08
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  GTPGNRSSGDGVGPVAQRIRARGYEPRCRGVKKGLHCIRT 41
          GTPGNRSSGDGVGPVAQRIRARGYEPRCRG +  L   RT
Sbjct: 12 GTPGNRSSGDGVGPVAQRIRARGYEPRCRGFESLLAHNRT 51

[Close]
BLAST of CcUC11G216310 vs. NCBI nr
Match: AIG89988.1 (hypothetical protein [Capsicum annuum])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 31
          GTPGNRSSGDGVGPVAQRIRARGYEPRCRG
Sbjct: 63 GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 92

[Close]
BLAST of CcUC11G216310 vs. NCBI nr
Match: GFP96860.1 (hypothetical protein PHJA_001830100 [Phtheirospermum japonicum] >GFQ08763.1 hypothetical protein PHJA_003020300 [Phtheirospermum japonicum])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 31
          GTPGNRSSGDGVGPVAQRIRARGYEPRCRG
Sbjct: 12 GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 41

[Close]
BLAST of CcUC11G216310 vs. NCBI nr
Match: KZN11232.1 (hypothetical protein DCAR_003888 [Daucus carota subsp. sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 31
          GTPGNRSSGDGVGPVAQRIRARGYEPRCRG
Sbjct: 56 GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 85

[Close]
BLAST of CcUC11G216310 vs. NCBI nr
Match: KAF4349368.1 (hypothetical protein G4B88_007858 [Cannabis sativa])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 31
          GTPGNRSSGDGVGPVAQRIRARGYEPRCRG
Sbjct: 37 GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 66

[Close]
BLAST of CcUC11G216310 vs. ExPASy TrEMBL
Match: A0A2U1PZB3 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA094820 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.4e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 31
          GTPGNRSSGDGVGPVAQRIRARGYEPRCRG
Sbjct: 12 GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 41

[Close]
BLAST of CcUC11G216310 vs. ExPASy TrEMBL
Match: A0A166IKQ0 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003888 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.4e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 31
          GTPGNRSSGDGVGPVAQRIRARGYEPRCRG
Sbjct: 56 GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 85

[Close]
BLAST of CcUC11G216310 vs. ExPASy TrEMBL
Match: A0A7J6DTD7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_007858 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.4e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 31
          GTPGNRSSGDGVGPVAQRIRARGYEPRCRG
Sbjct: 37 GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 66

[Close]
BLAST of CcUC11G216310 vs. ExPASy TrEMBL
Match: A0A2G3BYJ6 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_18445 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.4e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 31
          GTPGNRSSGDGVGPVAQRIRARGYEPRCRG
Sbjct: 63 GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 92

[Close]
BLAST of CcUC11G216310 vs. ExPASy TrEMBL
Match: A0A075VT18 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=orf115d PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.4e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 31
          GTPGNRSSGDGVGPVAQRIRARGYEPRCRG
Sbjct: 63 GTPGNRSSGDGVGPVAQRIRARGYEPRCRG 92

The following BLAST results are available for this feature:
BLAST of CcUC11G216310 vs. NCBI nr
Match NameE-valueIdentityDescription
GFQ03364.18.7e-0882.50hypothetical protein PHJA_002480200 [Phtheirospermum japonicum][more]
AIG89988.11.9e-07100.00hypothetical protein [Capsicum annuum][more]
GFP96860.11.9e-07100.00hypothetical protein PHJA_001830100 [Phtheirospermum japonicum] >GFQ08763.1 hypo... [more]
KZN11232.11.9e-07100.00hypothetical protein DCAR_003888 [Daucus carota subsp. sativus][more]
KAF4349368.11.9e-07100.00hypothetical protein G4B88_007858 [Cannabis sativa][more]
BLAST of CcUC11G216310 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC11G216310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2U1PZB39.4e-08100.00Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA094820 PE=4 SV=1[more]
A0A166IKQ09.4e-08100.00Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003888 ... [more]
A0A7J6DTD79.4e-08100.00Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_007858 PE=4 SV=1[more]
A0A2G3BYJ69.4e-08100.00Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_18445 PE=4 SV=1[more]
A0A075VT189.4e-08100.00Uncharacterized protein OS=Capsicum annuum OX=4072 GN=orf115d PE=4 SV=1[more]
BLAST of CcUC11G216310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC11G216310.1CcUC11G216310.1mRNA