CcUC11G214140 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC11G214140
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionChalcone-flavonone isomerase family protein
LocationCicolChr11: 6260062 .. 6263573 (+)
RNA-Seq ExpressionCcUC11G214140
SyntenyCcUC11G214140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCCGGCTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAACCAGGTATCGATACATCGAACGTGAAATCCGTGGTTACATTTGGGGAGTACTTTGATTTTCTCACCGGCGATGAAATCTCCAAGGCAGATAGGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGCGCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCGCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCGGCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCCCCGTCGTGTCGGCGTCGAGGAGGAGGCGGTGGGGATGGTCACGGTGGTGATCGGACTCCATCGTCACAGGAGCTGCTAACTACTTCAAAACAACAACAGGACTGATTCTGTCAGGTAATTTACTTTTAGATCTTGAACCTGTTTGATGAAATTCCACAGTGAAACTTGATAATTCAGAACCCTATAATTCGTTGAGGAGGGAATCGATCCACGAGAAAGATTGAAAGTAGAAAGTTCATATCCACTCATGTACCAATCAAACCCTTGTGTTCTCTGTTCCCACCTTCTAGCTTTCTCTTCTCTGGACCTTAATCAAAGCTCAACTGTAAAAGGGGGGGGCTTCGTTTTGATTCTGCCTGATCTGCCTTCAACTAGAAAGGACGATGAATGATGATTCTTTGAGAGTTAAATCAAACAGCTTTTAGGACTCCAACGAAGTTTCAAAGCATCTTACTAGTCACTCAAAAACCCAAAATACAAGAGCAGGTCAAAGAATAGTATACATGGCTGCAAAAAGCTTGGTTTCCCATGGCAGACCTTCTGAGAGGAACCAGGATAAAACATCAAAAGAATAGAAAATCTCTTAGCCTCACAAAACCCAAGTCCCTTGTTAGAAACTGAGAACTCCCAGAAAGAATTTTCTTCTGGCCAAACAAGAGAGGAAGAAGAAAAGTATAGAGGGGAAGTGGGGTTATTTGAATAGAAGTAAAAGAGAGAATTGAGTAGAATTAGAATATGGACAAGAAAATTAACAGCAAAAAAATGGGTATATTATCTGATACATAAAGTCTAAAGAGGGTGAGATGGGCAGGGCTAGACAATAATTAGAAGGAAATGGGGTTGCATAATTAATTGAGAAGAAAAGAACAGAGACAAAAAACTAACCTGTAATGGTACCTGATCCCCGACTAATCAAAGATTAGACAATATAAATAAATGCTGATTCTGAGCACAAAATCCTTCTTCCCCCCCGCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCTTTTTTTCATCTTCAAAAGTTAAAGTAAGCTGTCACTTTGGTTTTGGACCAGTGGCAAATGTTCCAGCCAAAAGCTTTGTCTAGGTAAGATTTGATGTCCTAGGTTGGTTCATATGGTTTTAAGATTACAATACCTTCCCTTCCCCCACATTAGTCATTAATGGGTTAAGTTACAAAGTATTTTGGTTCAAATGGTCAAATTTAGTCGTTTACTTTCAATAAATCTTAAATTTAGGTATTTTTTACAGCGATTATGTTTACAGAACTTATAGACATGATATAGACTGATTATGTTTACAAAACTTATAAACATAATATAGACCAAAGCATTTTATAGTATGGTAGGTTTGGCTTCACTTTCTTGAAATTAAAGGTTCTCAATAGATGAAGAATTCTTACCTGTCATTATAAAAAGAAAAAAGGATGATGTAACTGATTTTCTTAGAAGTTAACTATTACTTTATTGGAGAATATAAAACTTGTATAAAATAGTTGAATTTATGATGCTATGCAACTTTCTCCGTGATGTGTTTATTTTGAACAAGGTGGTATCAGTTCTTGGGAGTGATAATACATTTGCGCGTTATGTATCGATTTTCCTAGTTGGTTGTTAGAGGCTTACAAATTTGATTGTTCTGTTATTGCCTAAGAACTTAGTTCTAGTTCTAATCAGTAAAATTTTCTTGGCCATTCTTGGCCAAATTGACTAACGGTGGCAGTTGCAATTATATTGTTAAGCTTTCGATTTTAAAAATTGAGTCGTCAAACTTATATAAGTGTTAAAATTGAGTCAAATTGGACTTTTAAATTTATATATTTGTATAAATTGTAACATTTGTATAAGTTTGAGAGTTCAATTTTTATCATTTGTGTGTTCAAATTCTACCATTATTGTAAGCTTGAGGATCCAATTTTAACACTTTTAGAAGTTTAGTGACCCAATTTTTACAATTGAAACCAATCTTTGGAAGTTTAGTGGCCCATACTTCATGGTGATTTTTGCAATTTATTCTATTTTTTTCGTCTACAAAATAAATAAATAAAACAAGAACAAACAAACAAAAACAAGTGGTATCAATCGGACAAGCTCGGAGTCATACTCATTGATTGTTTGTCTTAATTTAACTATTAGAAATTGGAGTGAAATTTTCCATAGAAGGGCAGTTTAGAATTTCTAGAAATTTTAAGATTTTACTTTATTTTGCAGCAAGTTTTTTTCCATTGATGGTTAAACCTTTTTACTTTATTTTGCAGCAAATTGTGAGACGCAATTTTAGACAGGAAGGATGAATTAGAATCTTCTCTCTAAATCTAAATTTGTATATGAAAAACATGTTTCAAAAAAAAGATCAATAATGATAGCGTTGGTAAAATCAATATGCCAATGAATATAGATGGAATTTTTGTAATATAGAAGTATATAATATGATGACGGCTTAATTGACAAATCTATTATAATTCAATTGATTAAGACATTACATGTTCTTGACTAAGAGATTGACTATTTCATTTGTTAAAAATTAATGTAATGTTCTTGACTAAGAGATTGACTATTTCATTTGTTAAAAATTAATTTTTTTTTAATAGTTTGAATTAAAGTTAAAATTGATCCGTTTAAATTTATT

mRNA sequence

ATGGATTTCCGGCTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAACCAGGCAGATAGGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGCGCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCGCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCGGCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCCCCGTCGTGTCGGCGTCGAGGAGGAGGCGGTGGGGATGGTCACGGTGGTGATCGGACTCCATCGTCACAGGAGCTGCTAACTACTTCAAAACAACAACAGGACTGATTCTGTCAGCAAATTGTGAGACGCAATTTTAGACAGGAAGGATGAATTAGAATCTTCTCTCTAAATCTAAATTTGTATATGAAAAACATGTTTCAAAAAAAAGATCAATAATGATAGCGTTGGTAAAATCAATATGCCAATGAATATAGATGGAATTTTTGTAATATAGAAGTATATAATATGATGACGGCTTAATTGACAAATCTATTATAATTCAATTGATTAAGACATTACATGTTCTTGACTAAGAGATTGACTATTTCATTTGTTAAAAATTAATGTAATGTTCTTGACTAAGAGATTGACTATTTCATTTGTTAAAAATTAATTTTTTTTTAATAGTTTGAATTAAAGTTAAAATTGATCCGTTTAAATTTATT

Coding sequence (CDS)

ATGGATTTCCGGCTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAACCAGGCAGATAGGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGCGCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCGCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCGGCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCCCCGTCGTGTCGGCGTCGAGGAGGAGGCGGTGGGGATGGTCACGGTGGTGA

Protein sequence

MDFRLVGFRLQLPPILKPTVVRAVIDDMLDTTNGKPTRQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANRRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLPLDGAPVVSASRRRRWGWSRW
Homology
[Close]
BLAST of CcUC11G214140 vs. NCBI nr
Match: KCW47523.1 (hypothetical protein EUGRSUZ_K01285 [Eucalyptus grandis])

HSP 1 Score: 108.2 bits (269), Expect = 6.3e-20
Identity = 66/122 (54.10%), Postives = 77/122 (63.11%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANRRLQRRAHRTIE 97
           RQIG SV+ I    +DPYTATGIWR +   +PV A   A    VS  N RLQR A RT+E
Sbjct: 25  RQIGHSVAGIFAAAADPYTATGIWRRSRLLSPVVASLAAACSGVSAPNLRLQRSAQRTME 84

Query: 98  LSPRAQINAQSNAARIITMFVSKLASLLYE-FRVLLPLD-----GAPVVSASRRRRWGWS 154
           LSPRAQI+A S AAR+ITM VSKL SL+YE     +P       G P  SASR  R+ WS
Sbjct: 85  LSPRAQISAHSRAARMITMLVSKLVSLMYESVAAAVPFSPDASGGGPPRSASRNLRFRWS 144

[Close]
BLAST of CcUC11G214140 vs. NCBI nr
Match: KAF7830868.1 (hypothetical protein G2W53_013201 [Senna tora])

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-06
Identity = 38/57 (66.67%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 68  NPVAARREAVPPPVSKANRRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASL 125
           NP AA   A    VSKAN  L  RAH TIE +PRA I+AQS AA IITMFVSKLASL
Sbjct: 61  NPFAANLAAASSGVSKANLLLHLRAHLTIEFNPRAHISAQSKAASIITMFVSKLASL 117

[Close]
BLAST of CcUC11G214140 vs. NCBI nr
Match: KXG33623.1 (hypothetical protein SORBI_3003G338600 [Sorghum bicolor])

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-06
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSD--PYTATGIWRNALFFNPVAARREAVPPPVSKAN-RRLQRRAHR 97
           RQ+ Q+ +  + P +   PYT+TG+ R+A F +P A    A  PP S ++ RR QR   R
Sbjct: 67  RQMAQTSASTAAPSAPHAPYTSTGMLRSARFLSPPA---PAPAPPSSPSDARRAQRMRQR 126

Query: 98  TIELSPRAQINAQSNAARIITMFVSKLASLL 126
             EL P A+ +A S+AAR++TM VSKLASLL
Sbjct: 127 ASELRPSAKRSANSSAARMMTMLVSKLASLL 154

[Close]
BLAST of CcUC11G214140 vs. NCBI nr
Match: KAF8716856.1 (hypothetical protein HU200_025955 [Digitaria exilis])

HSP 1 Score: 61.2 bits (147), Expect = 8.8e-06
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPV----SKANRRLQRRAH 97
           RQ+ Q+ +  +   S PYT+TG+ R        +ARR + PPP     S+A RR QR   
Sbjct: 76  RQMAQTSAATAGAPSAPYTSTGMLR--------SARRLSPPPPAAASRSEAARRAQRMRQ 135

Query: 98  RTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLPLDGAPVVSAS 144
           R  EL P A+  A+S+AAR++TM VSKL SL+     LL L      SA+
Sbjct: 136 RASELRPSAKRRAKSSAARMMTMLVSKLPSLVLPGPGLLLLSACCAASAA 177

[Close]
BLAST of CcUC11G214140 vs. NCBI nr
Match: CAB3478694.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 61.2 bits (147), Expect = 8.8e-06
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPV----SKANRRLQRRAH 97
           RQ+ Q+ +  +   S PYT+TG+ R        +ARR + PPP     S+A RR QR   
Sbjct: 66  RQMAQTSAATAGAPSAPYTSTGMLR--------SARRLSPPPPAAASRSEAARRAQRMRQ 125

Query: 98  RTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLPLDGAPVVSAS 144
           R  EL P A+  A+S+AAR++TM VSKL SL+     LL L      SA+
Sbjct: 126 RASELRPSAKRRAKSSAARMMTMLVSKLPSLVLPGPGLLLLSACCAASAA 167

[Close]
BLAST of CcUC11G214140 vs. ExPASy TrEMBL
Match: A0A059A153 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01285 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 66/122 (54.10%), Postives = 77/122 (63.11%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANRRLQRRAHRTIE 97
           RQIG SV+ I    +DPYTATGIWR +   +PV A   A    VS  N RLQR A RT+E
Sbjct: 25  RQIGHSVAGIFAAAADPYTATGIWRRSRLLSPVVASLAAACSGVSAPNLRLQRSAQRTME 84

Query: 98  LSPRAQINAQSNAARIITMFVSKLASLLYE-FRVLLPLD-----GAPVVSASRRRRWGWS 154
           LSPRAQI+A S AAR+ITM VSKL SL+YE     +P       G P  SASR  R+ WS
Sbjct: 85  LSPRAQISAHSRAARMITMLVSKLVSLMYESVAAAVPFSPDASGGGPPRSASRNLRFRWS 144

[Close]
BLAST of CcUC11G214140 vs. ExPASy TrEMBL
Match: A0A1B6Q6S2 (Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G338600 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSD--PYTATGIWRNALFFNPVAARREAVPPPVSKAN-RRLQRRAHR 97
           RQ+ Q+ +  + P +   PYT+TG+ R+A F +P A    A  PP S ++ RR QR   R
Sbjct: 67  RQMAQTSASTAAPSAPHAPYTSTGMLRSARFLSPPA---PAPAPPSSPSDARRAQRMRQR 126

Query: 98  TIELSPRAQINAQSNAARIITMFVSKLASLL 126
             EL P A+ +A S+AAR++TM VSKLASLL
Sbjct: 127 ASELRPSAKRSANSSAARMMTMLVSKLASLL 154

[Close]
BLAST of CcUC11G214140 vs. ExPASy TrEMBL
Match: A0A368QGZ0 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_3G204600v2 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 48  SRPDSDPYTATGIWRNALFFNPVAA-------RREAVPPPVSKANRRLQRRAHRTIELSP 107
           S P   PYT+TG+ R+A F  P A          +A  PP   A R   R AHR  ELSP
Sbjct: 92  SPPPPPPYTSTGMLRSARFLIPPAQDAPRVDDDADAPSPPPPAAPRIPHRSAHRASELSP 151

Query: 108 RAQINAQSNAARIITMFVSKLAS 124
            A  +A+ +AAR+ITM VSKLAS
Sbjct: 152 MANSSAKKSAARMITMLVSKLAS 174

[Close]
BLAST of CcUC11G214140 vs. ExPASy TrEMBL
Match: A0A287LWU2 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 42/93 (45.16%), Postives = 49/93 (52.69%), Query Frame = 0 

Query: 54  PYTATGIWRNALFFNPV--------AARREAVPPPVSKANRRLQRRAHRTIELSPRAQIN 113
           PYT+ G   +  F +P         AA      PP S A RR  R  HR  ELSP A+  
Sbjct: 88  PYTSMGRLLSVSFLSPPRPPADADDAASSSPPAPPASSAERRAHRMRHRASELSPSAKSR 147

Query: 114 AQSNAARIITMFVSKLASLLYEFRVL-LPLDGA 138
           A+S+AAR+ITM VSKLAS L   R     LDGA
Sbjct: 148 AKSSAARMITMLVSKLASPLLRARCAPSALDGA 180

[Close]
BLAST of CcUC11G214140 vs. ExPASy TrEMBL
Match: A0A2K2DFR1 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g53561v3 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.1e-05
Identity = 39/100 (39.00%), Postives = 49/100 (49.00%), Query Frame = 0 

Query: 38  RQIGQSVSRISRPDSDPYTATGIWRNALFFNPV-------------AARREAVPPPVSKA 97
           RQ+  +    + P   PYT+ G   +  FF P+             AA   + PP    A
Sbjct: 77  RQMAHTSDAPADPPDAPYTSMGRLLSVRFFLPLLIPPPPPPPPPCTAAASSSTPPSPDDA 136

Query: 98  NRRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASL 125
            RR  R  HR  ELSP A+  A+  AAR+ITM VSKLASL
Sbjct: 137 ARRAHRMTHRASELSPSAKSRAKRRAARMITMLVSKLASL 176

The following BLAST results are available for this feature:
BLAST of CcUC11G214140 vs. NCBI nr
Match NameE-valueIdentityDescription
KCW47523.16.3e-2054.10hypothetical protein EUGRSUZ_K01285 [Eucalyptus grandis][more]
KAF7830868.13.0e-0666.67hypothetical protein G2W53_013201 [Senna tora][more]
KXG33623.13.9e-0646.15hypothetical protein SORBI_3003G338600 [Sorghum bicolor][more]
KAF8716856.18.8e-0640.91hypothetical protein HU200_025955 [Digitaria exilis][more]
CAB3478694.18.8e-0640.91unnamed protein product [Digitaria exilis][more]
BLAST of CcUC11G214140 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC11G214140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A059A1533.0e-2054.10Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01285 PE=4 SV... [more]
A0A1B6Q6S21.9e-0646.15Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G338600 PE=4 SV=... [more]
A0A368QGZ02.8e-0546.99Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_3G204600v2 PE=4 SV=1[more]
A0A287LWU22.8e-0545.16Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
A0A2K2DFR16.1e-0539.00Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g53561v3 P... [more]
BLAST of CcUC11G214140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC11G214140.1CcUC11G214140.1mRNA