CcUC11G212200 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G212200
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	ribosome-binding factor A family protein
Location	CicolChr11: 4098095 .. 4103246 (+)
RNA-Seq Expression	CcUC11G212200
Synteny	CcUC11G212200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACTAAACCTATCTGAAAACCAAATTTTGAATATTGAAAAACCTTAGGTAAGGATTGGGCAAAAATCAAAGCTCATAGAGCGCAAATCCGAATCCATTTTCAGCTCAATAAAGTTGAAATTTTGATCATAAATATCAAAAAAATCCCACAAAGAAAGTATTCATCAAGGGGATCAAACTTCAGGATGCACAGGATGCCGCATCTTCTGCAACAAATTCATCCCCAATCCCACCTTTCGCCACTGAAACTCTCATCTTCCTTAACATCTTCATCATTTCCCTCTCAATTTCAAGCTTCACGCCCATGGTTTTACTCCCCAAGTTCTGTAACCCTTCTTCGTCCACGTCCGGTGATGAGAGGCGCAACCATACAATGTATGGCCAATTCACGGAGGGTTAAAATGGTGGCCAAGCAGATTCAGAGGGAGCTTTCCGATATGCTTCTTACTGATAAGGTGTTACAGTACGCCATTCTTCCTGAGGCTTCTTTGGGAGCTGATAAGTATCTCTCTTCTCTCACCACCATCACCGATGTTGAAGTCTCTGCCGACTTGCAGGTATTTTGAGAGATTGTTCTAATTGAAGAGCAGGGTTGGGTTACTTTTTGTTTTTTCTTTTGTGCTTTGTTGCCATGAAATTGTAGTTAACATTTGTGGAACTGGGGAAGAATTGAAGCGAATGGCTAAATCCTAAAGGGTGATTGTTATACTTGAACTGGATAGTAAATGTTGTATTTGTTGAAGAAAAGGGATTCTTTCAAGTTTTGACTTCTTAAATTGCTACACAACTCAATTATTGGTTTGGTTGTATCTTGGATTCTGTGTATAGTGTAGTTTAGCCACTGGGAAATGATTAGGAGGCTTCAGAAGCCCGTTTGCAAATGTTTGGTTGAAGACATTTTTGACATTGTTATCTTTGGGGCACAAATGAAGGAGTATTCAAAATTTTAACTCGAGGATTAGACTGTTGGGGTCGTATTGAAATTGAAGAGAAGAAACACAGATACTTTAGTTTGGCTAGCGTGTCTGTGTCGGACACTAGGACACTCCGACTCTTGTTGGACACGGATCAGATACTTGTTAGTGCAACAAATCTGTTAGGCATACATAGAATACTTGTCAAGACTAAAAAGACACGTATATGACTTCCAATCTTGCCTTGAAAACAGTTTCCACGCTCTCCATTACTTGATTGAGTCGATGTCAAATGCAACATAGAGACTATTTCTTAAACGAGTGAACATATATACCCTTTTATTGTTGTGAAAATTTGAGTACTATGAAGGTCAGACCTTATTTTTTGCCATTTAACTCTTCACCATTCCTGAGTTATCAGTCCGTTTGTTATTTAAATTTTACAATTTAGGTACCATGTGGATGTGATGTGAATATGTTAATCTCAACTTAAACTCACCTGGAACAAAAAATAAATAGCTTTCCTATTCATTTTGGTGTATATGTTGGCCACGTTCCCTGATGCTTCAGCTGATGAGTAATGGTTGTTCACTATTATATGATTACGAACAAACAGGTGGTTAAAGTATACGTATCGGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATTGCCGGGTTGAAGTCTAAGGCTAAGTATGTTCGAAGTGTATTGGGAAAACGAATGAAGCTTCGCCTAACTCCTGAGATTCGATTTATAGAAGATGAATCTTTTGAGAGAGGAAGCAGGGTCAGTAACAAACTAACATTTTATGCTCTTGCTTACATAGTTTTTCTTGCTCTGGCCGGAGGCCAGTTTCGATTACTTTTAAGAATGGCTTCCACCAGATGTTTTCATCTCATATTCATCACTGTTTCCGAATGCATGTGGTTGGGCGTTCCAAACTTCAGCTTTATCTTCTATTTCCTATTGAAATATTCCTGGGAACTGGGAAGCTCCAGAAATAATCAATTCTTTGACTGCTGTTTCTTACAACAAATACTTGGAAATAACAAATTTACCAGTGACAAAAAGAGATGGTTTTGTGAGAGCAGTGGGTCATCGTAGTAATAAGGACTCTAGATGTTGGAGCTCCAAGGTTCTGGGTTTAAGTTTCTAGCCATAGAACTTAAAAGTGTAATTTTTGTTGTCTTGGAAGTTGACCATTGGGTGGGCAGAGTAGCTCAGGAATAGTGAATTTGGGCCAGAAGCATAATGCAATTAGTGTGAAACATACTTGTTATTTCTTATTTAAAAAAGAAAAAAAAAAAGCATAATGCAATGAGTGAAGGCGTCTCGGTACTTCAGTAGTTCGGTTATCGAGAGAGAGAACAAGATTATGAAGAGTACCAATTGTGGAATAGTTTGACTGTTAAAAAGTACTCAAACACTCTTATGCTTTGGTTAGAACTTATACACTTCTTGTGTGGAATCGATATTCCTGTTTGAAACTCATCCAGTCAATGCCTGTTGCAAATATTCAAGTTTTCACATCCCTATAATTTAACTGGAAGATTACTTCAAGGTTCTTTCCCGTACTAATTTGGTTTGAGCTTTCCCAGGTAATTGCCATATTGGATCGGATCAAGGATAAAAAGAAGGATACCGATGATGAAGAATTCGAGCCATCTGAACTATCTGATACTCTTGAAGACGACAGGGACTGGAAAGGTGATGATGCTGATGAAGACATAATATATGTACAATAGGTTACTCCATTGCTTGTCCAACTTATGCTCGTCTGTGCTGAGGCATCAATTTGTTCTTGCAGGTTCGTCATCTTTCGAGTTTCAGCAACAAATCTACTACCTCTATCCTTGTTGTTATCTTAGTTTTTTTTTTTACTTATGAAATATATTAAATTGATTTTGCCAAGATGCTTCTTATGTCTGCAATTCATGATTTCAAGTTATATAGCCAATCATCCATCTGGTTTAATTTCATTCTTGAAAACTTTGGGGTTCTAGGTTGAAGTGATATGGCATGTTAGTGCCCATTAAGGGTGAGTTTGGCCATCCACTTGATAGGAATGCTATTAGGAAATAATTAGACTACTTAAGGGCATAATAACAATTAGTTAGAGAAGTTGTTATGGTAGCTTGTTATTGTTGTGAAATCTCACAAACCCACCAAATCACTGATTGATTGTCTAAAACAGTTAAACACATTCCAGTTAATCACATTAAACCATACCATTCCAAATATCTAAATCAAGTGAGAGGAGTAGAGAGAGAACACAAATATTTATAGTGGTTCGACCAATGAGGTGCAAGGTGAACAATTCTTCTATTAACTTGAATTCTTCAAGAACAAAATACAATTCAAAAGGGAAGAAGATAAAGAAATCAATACTCAGCAACTCTCACACAAAATCCAGAAATTACCCACCGACCGAAAACCAGCCAAAGAAGATTTTCATAACAGTTAAATAATCACCCACGATCTCCCCTTTCGTGCACATCAAAAACGGTTCCCATCCCTCTGTTTATTGAAGAGGGAGAAAATAAAGATTATGCTAATTCAAGTTTTGGGCTTTCATAAATCATAAGCTTGTACACATATAGTTGAGCTTAAACAAATAAAAAGCCCAACCCAGAACTTAAAAATAAAACTGAGAGAATATGCTTGAGTCAAAACCACGAAGTCAACAGTTATAAATAGAACGTAGGAAAGACACACAATAGTTTAGTTTAGTGAGTGATTTAGGACTTGAGGGATCTCAAAATTGGGAGGGTCAAAGTACCTCGAACACTTGTTTATCTTGTTGTTTGTCAATATATTTGGGTTCTATCACCGCCCAGTTTAAGCAGTTTATTAAAAGATTTATTATTCCACCAAAAAGATTTCTATATTTAAGAGAAAAAACTGTTTCTTCAAGTAAAAACCAAAACCAAAACCAAAACCAATTTAATCCATTTTTTCATCTCTAGAAAAAAAAAAATGTTGATTCTTTTTGTTCAACTTTATCTAAAACTGGAACAAAGCAAAAGGAAAAGTTGTATTAAACAAATTAAACTTTTAAGAACAAAAAGTGAAAAAATGACAATTTTGGTGTGCTCAACTTTTATCTTGGATGATATAATTTTGAGGCCTCAATTGTTATTTGCAGAGCAGAAGTCAAAGTAAAGATGCTTCAACCACCATGAAGTCAGAATGATGTTCCTCAAAGATTCTCCACTATACCATCCAAAGTCTATTATCCTTAAAGATGGTAGACAGAAATTGCTTGGTTTCTCTTCTGATTCAATTGTTTGTAGTTGCATAGAGATAATATCATATACATATTCTAATTTCTAGTCGAACTAAGATGTCGAGAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAGATTTGAAGGTGGAAAAGACAAGATCCTCTTGAATGATTCCAAGTTCTTGGCTTCCATTGATTAATGTGGAATTGTAAATCAGGAATTTGTCCCACAAAAAAAAAAGAAAGTAATAGATTTCTACACTTTTATTTATTTATTTAATCAACATTGTACCGTTGAAGAAAGTTGGTTAACATGAGACAAAACAAAAGTTAGTTAGTAATCATGGTGTTAAATTTCGAGCGACATCTCTAACATCTAGATGTTGAAAGGTTCGACATGTTGAACCGTTCTGTTTTTTTTTCCCAATGGTTTCTGTCTCTTGTTTTTCTTTTTTCAAGTCGTATGGGAAT

mRNA sequence

TAACTAAACCTATCTGAAAACCAAATTTTGAATATTGAAAAACCTTAGGTAAGGATTGGGCAAAAATCAAAGCTCATAGAGCGCAAATCCGAATCCATTTTCAGCTCAATAAAGTTGAAATTTTGATCATAAATATCAAAAAAATCCCACAAAGAAAGTATTCATCAAGGGGATCAAACTTCAGGATGCACAGGATGCCGCATCTTCTGCAACAAATTCATCCCCAATCCCACCTTTCGCCACTGAAACTCTCATCTTCCTTAACATCTTCATCATTTCCCTCTCAATTTCAAGCTTCACGCCCATGGTTTTACTCCCCAAGTTCTGTAACCCTTCTTCGTCCACGTCCGGTGATGAGAGGCGCAACCATACAATGTATGGCCAATTCACGGAGGGTTAAAATGGTGGCCAAGCAGATTCAGAGGGAGCTTTCCGATATGCTTCTTACTGATAAGGTGTTACAGTACGCCATTCTTCCTGAGGCTTCTTTGGGAGCTGATAAGTATCTCTCTTCTCTCACCACCATCACCGATGTTGAAGTCTCTGCCGACTTGCAGGTGGTTAAAGTATACGTATCGGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATTGCCGGGTTGAAGTCTAAGGCTAAGTATGTTCGAAGTGTATTGGGAAAACGAATGAAGCTTCGCCTAACTCCTGAGATTCGATTTATAGAAGATGAATCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAGGATAAAAAGAAGGATACCGATGATGAAGAATTCGAGCCATCTGAACTATCTGATACTCTTGAAGACGACAGGGACTGGAAAGGTGATGATGCTGATGAAGACATAATATATGTACAATAGGTTACTCCATTGCTTGTCCAACTTATGCTCGTCTGTGCTGAGGCATCAATTTGTTCTTGCAGAGCAGAAGTCAAAGTAAAGATGCTTCAACCACCATGAAGTCAGAATGATGTTCCTCAAAGATTCTCCACTATACCATCCAAAGTCTATTATCCTTAAAGATGAGATTTGAAGGTGGAAAAGACAAGATCCTCTTGAATGATTCCAAGTTCTTGGCTTCCATTGATTAATGTGGAATTGTAAATCAGGAATTTGTCCCACAAAAAAAAAAGAAAGTAATAGATTTCTACACTTTTATTTATTTATTTAATCAACATTGTACCGTTGAAGAAAGTTGGTTAACATGAGACAAAACAAAAGTTAGTTAGTAATCATGGTGTTAAATTTCGAGCGACATCTCTAACATCTAGATGTTGAAAGGTTCGACATGTTGAACCGTTCTGTTTTTTTTTCCCAATGGTTTCTGTCTCTTGTTTTTCTTTTTTCAAGTCGTATGGGAAT

Coding sequence (CDS)

ATGCACAGGATGCCGCATCTTCTGCAACAAATTCATCCCCAATCCCACCTTTCGCCACTGAAACTCTCATCTTCCTTAACATCTTCATCATTTCCCTCTCAATTTCAAGCTTCACGCCCATGGTTTTACTCCCCAAGTTCTGTAACCCTTCTTCGTCCACGTCCGGTGATGAGAGGCGCAACCATACAATGTATGGCCAATTCACGGAGGGTTAAAATGGTGGCCAAGCAGATTCAGAGGGAGCTTTCCGATATGCTTCTTACTGATAAGGTGTTACAGTACGCCATTCTTCCTGAGGCTTCTTTGGGAGCTGATAAGTATCTCTCTTCTCTCACCACCATCACCGATGTTGAAGTCTCTGCCGACTTGCAGGTGGTTAAAGTATACGTATCGGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATTGCCGGGTTGAAGTCTAAGGCTAAGTATGTTCGAAGTGTATTGGGAAAACGAATGAAGCTTCGCCTAACTCCTGAGATTCGATTTATAGAAGATGAATCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAGGATAAAAAGAAGGATACCGATGATGAAGAATTCGAGCCATCTGAACTATCTGATACTCTTGAAGACGACAGGGACTGGAAAGGTGATGATGCTGATGAAGACATAATATATGTACAATAG

Protein sequence

MHRMPHLLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATIQCMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ

Homology

[Close]

BLAST of CcUC11G212200 vs. NCBI nr
Match: XP_038900542.1 (probable ribosome-binding factor A, chloroplastic [Benincasa hispida])

HSP 1 Score: 403.7 bits (1036), Expect = 1.1e-108
Identity = 218/227 (96.04%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 4   MPHLLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATIQ 63
           MPHLLQQIHPQ HLSPLKLSSSL SS FPSQFQASRPWFYSPSSVTLLRP P M GATI+
Sbjct: 1   MPHLLQQIHPQPHLSPLKLSSSLPSSPFPSQFQASRPWFYSPSSVTLLRP-PRMMGATIR 60

Query: 64  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 123
           CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL
Sbjct: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120

Query: 124 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 183
           QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 184 IAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           IAILDRIKDKKKD DDE+FEPSELSDTLEDDRDWKGDDADEDIIYVQ
Sbjct: 181 IAILDRIKDKKKDNDDEDFEPSELSDTLEDDRDWKGDDADEDIIYVQ 226

[Close]

BLAST of CcUC11G212200 vs. NCBI nr
Match: XP_008457619.1 (PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo] >XP_016902146.1 PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo] >KAA0045661.1 putative ribosome-binding factor A [Cucumis melo var. makuwa] >TYK02601.1 putative ribosome-binding factor A [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 5.4e-100
Identity = 205/228 (89.91%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 4   MPH-LLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATI 63
           MPH LLQQIHPQ + SPLK SSSL SS FPSQFQASRP FYSPSSV LL P PVMRGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 64  QCMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSAD 123
           +CMANSRRVKMVAKQIQRELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 124 LQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 183
           LQVVKVYVSVFGDE+GKDVA+AGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 184 VIAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           VIAILDRIKDKKKDT DE+F+  ELSD L+DDRDWKGDDADEDIIYVQ
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]

BLAST of CcUC11G212200 vs. NCBI nr
Match: XP_004151338.1 (probable ribosome-binding factor A, chloroplastic [Cucumis sativus] >KGN61860.1 hypothetical protein Csa_006608 [Cucumis sativus])

HSP 1 Score: 365.5 bits (937), Expect = 3.3e-97
Identity = 200/224 (89.29%), Postives = 208/224 (92.86%), Query Frame = 0


Query: 7   LLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATIQCMA 66
           LLQQIHPQ + SPLK    L SS FPSQFQASRP  YSP+SVTLL P PVMRGATI+CMA
Sbjct: 5   LLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMA 64

Query: 67  NSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVV 126
           NSRR+KMVAKQIQRELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTITDVEVSADLQVV
Sbjct: 65  NSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVV 124

Query: 127 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 186
           KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI
Sbjct: 125 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 184

Query: 187 LDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           LDRIKDKKKDT DE+F+  ELSD L+DDRDWKGDDADEDIIYVQ
Sbjct: 185 LDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 225

[Close]

BLAST of CcUC11G212200 vs. NCBI nr
Match: XP_022948118.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita moschata])

HSP 1 Score: 361.7 bits (927), Expect = 4.7e-96
Identity = 195/227 (85.90%), Postives = 210/227 (92.51%), Query Frame = 0


Query: 4   MPHLLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATIQ 63
           MPHLLQQIHPQSH  PLKLSSSL SS FPSQF AS P F SP+SV L+R RPVMRGATI+
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIR 60

Query: 64  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 123
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 124 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 183
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 184 IAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           IAILDRIKD+K + DDE+ E SELSD  +DDRDW+ DDADEDIIYVQ
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

[Close]

BLAST of CcUC11G212200 vs. NCBI nr
Match: XP_023534592.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.4 bits (921), Expect = 2.3e-95
Identity = 193/227 (85.02%), Postives = 210/227 (92.51%), Query Frame = 0


Query: 4   MPHLLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATIQ 63
           MPHLLQQIHPQSH  PLKLSSSL SS FPSQF AS P F SP+SV ++R RPVMRG TI+
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVAVVRRRPVMRGVTIR 60

Query: 64  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 123
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 124 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 183
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 184 IAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           IAILDRIKD+K + DDE+ E SELSD+ +DDRDW+ DDADEDIIYVQ
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDSPQDDRDWEEDDADEDIIYVQ 227

[Close]

BLAST of CcUC11G212200 vs. ExPASy Swiss-Prot
Match: O65693 (Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g34730 PE=2 SV=2)

HSP 1 Score: 238.4 bits (607), Expect = 7.9e-62
Identity = 149/227 (65.64%), Postives = 171/227 (75.33%), Query Frame = 0


Query: 4   MPHLLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATIQ 63
           MP+LL     QSH   L      T SS    F   +    S + V L     V R  T++
Sbjct: 1   MPNLLHT--NQSHFFFLHHPPIYTVSSKTQAFHFPQ----SMAPVNLRTNLSVRR--TVR 60

Query: 64  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 123
           CMAN RRVKMVAKQI RELSDMLLTD VLQ+A+LPEA+LGAD+YLSSLTTI+DVEVS DL
Sbjct: 61  CMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDL 120

Query: 124 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 183
           QVVKVYVSVFGD+RGKDVAIAGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERGSRV
Sbjct: 121 QVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRV 180

Query: 184 IAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           IAILD+IK +K   + +    +E SD+ EDD+DW+ DD DEDIIYV+
Sbjct: 181 IAILDKIKAEKGSGEGK----TEPSDSTEDDQDWEVDDPDEDIIYVK 215

[Close]

BLAST of CcUC11G212200 vs. ExPASy Swiss-Prot
Match: B0JRP8 (Ribosome-binding factor A OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rbfA PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-21
Identity = 60/140 (42.86%), Postives = 90/140 (64.29%), Query Frame = 0


Query: 65  MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 124
           MAN RRV  V+  I+RE+S MLL +            +  D+  + + ++TDV++S DLQ
Sbjct: 1   MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVDLSHDLQ 60

Query: 125 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 184
             K++VS++G+E  K   +AGLK+ A +VR  LG+R++LR TPE+ F+ED S ERG R++
Sbjct: 61  HAKIFVSIYGNEDAKAETMAGLKASAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRML 120

Query: 185 AILDRIK-DKKKDTDDEEFE 204
            +LD IK D+  + DD E E
Sbjct: 121 HLLDHIKTDRPPEDDDSEEE 128

[Close]

BLAST of CcUC11G212200 vs. ExPASy Swiss-Prot
Match: Q93LL7 (Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rbfA PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 0


Query: 65  MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 124
           MA +RRV  VA+ I+RE+S MLL              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 125 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 184
             K+YVS++G +  K   +AGLKS   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVL 120

Query: 185 AILDRIK-----------DKKKDTDDEEF 203
           A+L ++            +   D DDE F
Sbjct: 121 ALLSQLNHDRPPENLLAVEDNTDEDDESF 137

[Close]

BLAST of CcUC11G212200 vs. ExPASy Swiss-Prot
Match: Q8Z0M8 (Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbfA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-20
Identity = 61/150 (40.67%), Postives = 94/150 (62.67%), Query Frame = 0


Query: 65  MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 124
           MA +RRV  VA+ I+RE+S ML+              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 125 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 184
             K+YVS++G E  K   +AGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 185 AILDRIKDKKKDTDDEEFEPSELSDTLEDD 215
            +L+++++ +   D     PS   D+L++D
Sbjct: 121 TLLNKLENARSPDD----IPS-ADDSLDED 133

[Close]

BLAST of CcUC11G212200 vs. ExPASy Swiss-Prot
Match: B7KDJ9 (Ribosome-binding factor A OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rbfA PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.4e-20
Identity = 58/142 (40.85%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 65  MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 124
           MA  RRV  V+  I+RE+S MLL              +  D+  + + +ITDV+VS DLQ
Sbjct: 1   MATDRRVSRVSSLIKREVSQMLL------------HGIKDDRVGAGMVSITDVDVSGDLQ 60

Query: 125 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 184
             K++VS++G E+ K   + GLKS   +VR  LG+R++LR TPE+ F+ED S ERG R +
Sbjct: 61  HAKIFVSIYGTEQAKAETMEGLKSSVGFVRRELGQRIRLRRTPEVVFLEDTSLERGDRTL 120

Query: 185 AILDRIKDKKKDTDDEEFEPSE 207
            +L++++D +K+ +DE  EP++
Sbjct: 121 HLLNQLQDARKE-EDEYIEPAQ 129

[Close]

BLAST of CcUC11G212200 vs. ExPASy TrEMBL
Match: A0A1S4E1P3 (probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497269 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.6e-100
Identity = 205/228 (89.91%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 4   MPH-LLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATI 63
           MPH LLQQIHPQ + SPLK SSSL SS FPSQFQASRP FYSPSSV LL P PVMRGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 64  QCMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSAD 123
           +CMANSRRVKMVAKQIQRELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 124 LQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 183
           LQVVKVYVSVFGDE+GKDVA+AGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 184 VIAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           VIAILDRIKDKKKDT DE+F+  ELSD L+DDRDWKGDDADEDIIYVQ
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]

BLAST of CcUC11G212200 vs. ExPASy TrEMBL
Match: A0A5A7TVW4 (Putative ribosome-binding factor A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00030 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.6e-100
Identity = 205/228 (89.91%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 4   MPH-LLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATI 63
           MPH LLQQIHPQ + SPLK SSSL SS FPSQFQASRP FYSPSSV LL P PVMRGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 64  QCMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSAD 123
           +CMANSRRVKMVAKQIQRELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 124 LQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 183
           LQVVKVYVSVFGDE+GKDVA+AGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 184 VIAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           VIAILDRIKDKKKDT DE+F+  ELSD L+DDRDWKGDDADEDIIYVQ
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]

BLAST of CcUC11G212200 vs. ExPASy TrEMBL
Match: A0A0A0LIX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252090 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.6e-97
Identity = 200/224 (89.29%), Postives = 208/224 (92.86%), Query Frame = 0


Query: 7   LLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATIQCMA 66
           LLQQIHPQ + SPLK    L SS FPSQFQASRP  YSP+SVTLL P PVMRGATI+CMA
Sbjct: 5   LLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMA 64

Query: 67  NSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVV 126
           NSRR+KMVAKQIQRELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTITDVEVSADLQVV
Sbjct: 65  NSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVV 124

Query: 127 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 186
           KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI
Sbjct: 125 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 184

Query: 187 LDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           LDRIKDKKKDT DE+F+  ELSD L+DDRDWKGDDADEDIIYVQ
Sbjct: 185 LDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 225

[Close]

BLAST of CcUC11G212200 vs. ExPASy TrEMBL
Match: A0A6J1G8H2 (probable ribosome-binding factor A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451795 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.3e-96
Identity = 195/227 (85.90%), Postives = 210/227 (92.51%), Query Frame = 0


Query: 4   MPHLLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATIQ 63
           MPHLLQQIHPQSH  PLKLSSSL SS FPSQF AS P F SP+SV L+R RPVMRGATI+
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIR 60

Query: 64  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 123
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 124 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 183
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 184 IAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           IAILDRIKD+K + DDE+ E SELSD  +DDRDW+ DDADEDIIYVQ
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

[Close]

BLAST of CcUC11G212200 vs. ExPASy TrEMBL
Match: A0A6J1KXB5 (probable ribosome-binding factor A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111499618 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.5e-95
Identity = 192/227 (84.58%), Postives = 208/227 (91.63%), Query Frame = 0


Query: 4   MPHLLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATIQ 63
           MPHLLQQIHPQ H  PLKLSSSL SS FPSQF  S P F SP+SV L+R RPVMRGATIQ
Sbjct: 1   MPHLLQQIHPQPHHFPLKLSSSLASSRFPSQFLTSPPCFCSPNSVALVRQRPVMRGATIQ 60

Query: 64  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 123
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 124 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 183
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 184 IAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           IAILDRIKD+K + DDE+ E SELSD  +DDRDW+ D+ADEDIIY+Q
Sbjct: 181 IAILDRIKDEKNNIDDEDMEKSELSDAPQDDRDWEEDEADEDIIYIQ 227

[Close]

BLAST of CcUC11G212200 vs. TAIR 10
Match: AT4G34730.1 (ribosome-binding factor A family protein )

HSP 1 Score: 238.4 bits (607), Expect = 5.6e-63
Identity = 149/227 (65.64%), Postives = 171/227 (75.33%), Query Frame = 0


Query: 4   MPHLLQQIHPQSHLSPLKLSSSLTSSSFPSQFQASRPWFYSPSSVTLLRPRPVMRGATIQ 63
           MP+LL     QSH   L      T SS    F   +    S + V L     V R  T++
Sbjct: 1   MPNLLHT--NQSHFFFLHHPPIYTVSSKTQAFHFPQ----SMAPVNLRTNLSVRR--TVR 60

Query: 64  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 123
           CMAN RRVKMVAKQI RELSDMLLTD VLQ+A+LPEA+LGAD+YLSSLTTI+DVEVS DL
Sbjct: 61  CMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDL 120

Query: 124 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 183
           QVVKVYVSVFGD+RGKDVAIAGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERGSRV
Sbjct: 121 QVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRV 180

Query: 184 IAILDRIKDKKKDTDDEEFEPSELSDTLEDDRDWKGDDADEDIIYVQ 231
           IAILD+IK +K   + +    +E SD+ EDD+DW+ DD DEDIIYV+
Sbjct: 181 IAILDKIKAEKGSGEGK----TEPSDSTEDDQDWEVDDPDEDIIYVK 215

The following BLAST results are available for this feature:

BLAST of CcUC11G212200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900542.1	1.1e-108	96.04	probable ribosome-binding factor A, chloroplastic [Benincasa hispida]	[more]
XP_008457619.1	5.4e-100	89.91	PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo] >XP_...	[more]
XP_004151338.1	3.3e-97	89.29	probable ribosome-binding factor A, chloroplastic [Cucumis sativus] >KGN61860.1 ...	[more]
XP_022948118.1	4.7e-96	85.90	probable ribosome-binding factor A, chloroplastic [Cucurbita moschata]	[more]
XP_023534592.1	2.3e-95	85.02	probable ribosome-binding factor A, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC11G212200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65693	7.9e-62	65.64	Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B0JRP8	4.0e-21	42.86	Ribosome-binding factor A OS=Microcystis aeruginosa (strain NIES-843) OX=449447 ...	[more]
Q93LL7	1.5e-20	40.94	Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]
Q8Z0M8	2.0e-20	40.67	Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
B7KDJ9	3.4e-20	40.85	Ribosome-binding factor A OS=Gloeothece citriformis (strain PCC 7424) OX=65393 G...	[more]

BLAST of CcUC11G212200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1P3	2.6e-100	89.91	probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5A7TVW4	2.6e-100	89.91	Putative ribosome-binding factor A OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0LIX7	1.6e-97	89.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252090 PE=3 SV=1	[more]
A0A6J1G8H2	2.3e-96	85.90	probable ribosome-binding factor A, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KXB5	2.5e-95	84.58	probable ribosome-binding factor A, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of CcUC11G212200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34730.1	5.6e-63	65.64	ribosome-binding factor A family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000238	Ribosome-binding factor A	TIGRFAM	TIGR00082	TIGR00082	coord: 65..191 e-value: 9.5E-24 score: 82.1
IPR000238	Ribosome-binding factor A	PFAM	PF02033	RBFA	coord: 70..187 e-value: 1.5E-27 score: 96.1
IPR000238	Ribosome-binding factor A	PANTHER	PTHR33515	RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED	coord: 58..230
IPR000238	Ribosome-binding factor A	HAMAP	MF_00003	RbfA	coord: 69..187 score: 22.110432
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 65..181 e-value: 2.3E-35 score: 123.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..230
IPR020053	Ribosome-binding factor A, conserved site	PROSITE	PS01319	RBFA	coord: 153..174
IPR023799	Ribosome-binding factor A domain superfamily	SUPERFAMILY	89919	Ribosome-binding factor A, RbfA	coord: 65..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G212200.1	CcUC11G212200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0043024	ribosomal small subunit binding