CcUC11G212090 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC11G212090
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionGlutamine amidotransferase type-1 domain-containing protein
LocationCicolChr11: 4005367 .. 4006677 (+)
RNA-Seq ExpressionCcUC11G212090
SyntenyCcUC11G212090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCTCACAGTTTGGAACTACGACGGTGGCTTGGACCGTCCTTCCCTACTGAATGCCACAACATTGCAAATCCGATTGGACTAGGTACCTTTTGCATCGTGATAATCAAACTATTACGAATCACTTAGTTGTCCTCTAGGATTGGTCAAAGTACATGTAAGTTCGCTTTTCTCCTAATATCAGAAGGTAATGGCTGGAGCGGAGGACTTACTTGACACTTGTCGCAGTATAAAATTTTCAAATTTCAATGATTCATTCACTGTTGAAATGTCTTGAATTTGTTTATCTGACGCTTCGAATGACCAAGCATGTAGGTCAAGGGTTCAAAGGAGTGCGCTATATATAAACTCTTTAACTCTCATGGCACCTATGTAATCTGTAATATGACATTTCTCTCTAAGAATAAAAAGTAGCTTAACACTGTTAGTGAACTATGTAAATCTCAGTATTGACTTCTCTATTGTTTACGTTTTTCGTTTTTCTTTGATTGTCGATTTTATAACACATATCAATATTGGGTGAAAATTTGATAACTTATGAGGGGTTAGTTTGGACTCTGACACAAAAAATAAAGAACACTAAATCATCTTGGAGCCTGTGATGATTTTGTATGAATTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATTGCTCTAATTTTTATACAGAAAAACAATATACAATGATATTCTACTTTGATTCTCTTCAAACAAGAATGAAAAGAGAAGTTGGTAAAATTGTTCCACTCTTTTTTGGTGGGAAATTGTAGCTTTCGCTGCTCTACTTTTCAAGAGGTATGCAATCTTGAAGTGAGATCAATGAAGGCATCTTCTTTGCAGGGAATTGTCAAACCCCCACTTGGATGGTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGCAGACTTAGAAATGAAGGATGGTTCAAGTATGATACCGGCACCACAAATCGCTTCCTTCGAGTCTCTCCCACGTATACTGCAATGTGGCCTTTGGGAATGTTGGAATGACATCTTGTTGAAATAGATTGCATTCTGAATATTTGCTTGGCATTGAGGAGAATCGAAGGCAGACGAATTCCCATTTCTGTATTTGA

mRNA sequence

ATGGAGCCTCACAGTTTGGAACTACGACGGTGGCTTGGACCGTCCTTCCCTACTGAATGCCACAACATTGCAAATCCGATTGGACTAGAGGTATGCAATCTTGAAGTGAGATCAATGAAGGCATCTTCTTTGCAGGGAATTGTCAAACCCCCACTTGGATGGTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGCAGACTTAGAAATGAAGGATGGTTCAAATTGCATTCTGAATATTTGCTTGGCATTGAGGAGAATCGAAGGCAGACGAATTCCCATTTCTGTATTTGA

Coding sequence (CDS)

ATGGAGCCTCACAGTTTGGAACTACGACGGTGGCTTGGACCGTCCTTCCCTACTGAATGCCACAACATTGCAAATCCGATTGGACTAGAGGTATGCAATCTTGAAGTGAGATCAATGAAGGCATCTTCTTTGCAGGGAATTGTCAAACCCCCACTTGGATGGTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGCAGACTTAGAAATGAAGGATGGTTCAAATTGCATTCTGAATATTTGCTTGGCATTGAGGAGAATCGAAGGCAGACGAATTCCCATTTCTGTATTTGA

Protein sequence

MEPHSLELRRWLGPSFPTECHNIANPIGLEVCNLEVRSMKASSLQGIVKPPLGWLNPNSSSALLSRLRNEGWFKLHSEYLLGIEENRRQTNSHFCI
Homology
[Close]
BLAST of CcUC11G212090 vs. NCBI nr
Match: KAG6605012.1 (hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 29 LEVCNLEVRSMKASSLQGIVKPPLGWLNPNSSSALLSRLRNEGWFKLHSEYLLGIEENRR 88
          L +  LEVR  KASSL GIVKPP+GW NPNSSS LLS+   EG F LH + LLGI++NR 
Sbjct: 28 LFIPGLEVRFRKASSLHGIVKPPIGWQNPNSSSDLLSKSTKEGCFSLHFQNLLGIKKNRW 87

Query: 89 QTNSH 94
          QT SH
Sbjct: 88 QTESH 92

[Close]
BLAST of CcUC11G212090 vs. NCBI nr
Match: KAG6571061.1 (hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 33 NLEVRSMKASSLQGIVKPPLGWLNPNSSSALLSRLRNEGWFKLHSEYLLGI 84
          NLEV SMKASSLQ +V PP+GWLNPNSSSALLS+ +NEGW  + +E++ G+
Sbjct: 36 NLEVTSMKASSLQEMVNPPVGWLNPNSSSALLSKSKNEGW-NITNEFIEGV 85

[Close]
BLAST of CcUC11G212090 vs. NCBI nr
Match: KAF4382035.1 (hypothetical protein G4B88_006667 [Cannabis sativa])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 0 

Query: 3   PHSLELRRWLGPSFPTEC----HNIANPIGLEVC-NLEVRSMKASSLQGIVKPPLGWLNP 62
           PHS+       PSFP        +I     L +C  L++   K    +GIV+PP+GW NP
Sbjct: 63  PHSVHTPG--SPSFPHGFIEWPESINGVFVLRICYGLQLIFQKLGETRGIVRPPVGWSNP 122

Query: 63  NSSSALLSRLRNEGWFK 75
           NSSSA  ++  N+GWFK
Sbjct: 123 NSSSARFNKFWNKGWFK 137

[Close]
BLAST of CcUC11G212090 vs. ExPASy TrEMBL
Match: A0A7J6GGK7 (Glutamine amidotransferase type-1 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_006667 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 0 

Query: 3   PHSLELRRWLGPSFPTEC----HNIANPIGLEVC-NLEVRSMKASSLQGIVKPPLGWLNP 62
           PHS+       PSFP        +I     L +C  L++   K    +GIV+PP+GW NP
Sbjct: 63  PHSVHTPG--SPSFPHGFIEWPESINGVFVLRICYGLQLIFQKLGETRGIVRPPVGWSNP 122

Query: 63  NSSSALLSRLRNEGWFK 75
           NSSSA  ++  N+GWFK
Sbjct: 123 NSSSARFNKFWNKGWFK 137

The following BLAST results are available for this feature:
BLAST of CcUC11G212090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605012.11.4e-1264.62hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571061.13.1e-0966.67hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF4382035.12.3e-0440.26hypothetical protein G4B88_006667 [Cannabis sativa][more]
BLAST of CcUC11G212090 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC11G212090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6GGK71.1e-0440.26Glutamine amidotransferase type-1 domain-containing protein OS=Cannabis sativa O... [more]
BLAST of CcUC11G212090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC11G212090.1CcUC11G212090.1mRNA