CcUC11G212090 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G212090
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Glutamine amidotransferase type-1 domain-containing protein
Location	CicolChr11: 4005367 .. 4006677 (+)
RNA-Seq Expression	CcUC11G212090
Synteny	CcUC11G212090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCTCACAGTTTGGAACTACGACGGTGGCTTGGACCGTCCTTCCCTACTGAATGCCACAACATTGCAAATCCGATTGGACTAGGTACCTTTTGCATCGTGATAATCAAACTATTACGAATCACTTAGTTGTCCTCTAGGATTGGTCAAAGTACATGTAAGTTCGCTTTTCTCCTAATATCAGAAGGTAATGGCTGGAGCGGAGGACTTACTTGACACTTGTCGCAGTATAAAATTTTCAAATTTCAATGATTCATTCACTGTTGAAATGTCTTGAATTTGTTTATCTGACGCTTCGAATGACCAAGCATGTAGGTCAAGGGTTCAAAGGAGTGCGCTATATATAAACTCTTTAACTCTCATGGCACCTATGTAATCTGTAATATGACATTTCTCTCTAAGAATAAAAAGTAGCTTAACACTGTTAGTGAACTATGTAAATCTCAGTATTGACTTCTCTATTGTTTACGTTTTTCGTTTTTCTTTGATTGTCGATTTTATAACACATATCAATATTGGGTGAAAATTTGATAACTTATGAGGGGTTAGTTTGGACTCTGACACAAAAAATAAAGAACACTAAATCATCTTGGAGCCTGTGATGATTTTGTATGAATTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATTGCTCTAATTTTTATACAGAAAAACAATATACAATGATATTCTACTTTGATTCTCTTCAAACAAGAATGAAAAGAGAAGTTGGTAAAATTGTTCCACTCTTTTTTGGTGGGAAATTGTAGCTTTCGCTGCTCTACTTTTCAAGAGGTATGCAATCTTGAAGTGAGATCAATGAAGGCATCTTCTTTGCAGGGAATTGTCAAACCCCCACTTGGATGGTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGCAGACTTAGAAATGAAGGATGGTTCAAGTATGATACCGGCACCACAAATCGCTTCCTTCGAGTCTCTCCCACGTATACTGCAATGTGGCCTTTGGGAATGTTGGAATGACATCTTGTTGAAATAGATTGCATTCTGAATATTTGCTTGGCATTGAGGAGAATCGAAGGCAGACGAATTCCCATTTCTGTATTTGA

mRNA sequence

ATGGAGCCTCACAGTTTGGAACTACGACGGTGGCTTGGACCGTCCTTCCCTACTGAATGCCACAACATTGCAAATCCGATTGGACTAGAGGTATGCAATCTTGAAGTGAGATCAATGAAGGCATCTTCTTTGCAGGGAATTGTCAAACCCCCACTTGGATGGTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGCAGACTTAGAAATGAAGGATGGTTCAAATTGCATTCTGAATATTTGCTTGGCATTGAGGAGAATCGAAGGCAGACGAATTCCCATTTCTGTATTTGA

Coding sequence (CDS)

ATGGAGCCTCACAGTTTGGAACTACGACGGTGGCTTGGACCGTCCTTCCCTACTGAATGCCACAACATTGCAAATCCGATTGGACTAGAGGTATGCAATCTTGAAGTGAGATCAATGAAGGCATCTTCTTTGCAGGGAATTGTCAAACCCCCACTTGGATGGTTGAATCCAAACTCTTCTTCAGCTCTGTTGAGCAGACTTAGAAATGAAGGATGGTTCAAATTGCATTCTGAATATTTGCTTGGCATTGAGGAGAATCGAAGGCAGACGAATTCCCATTTCTGTATTTGA

Protein sequence

MEPHSLELRRWLGPSFPTECHNIANPIGLEVCNLEVRSMKASSLQGIVKPPLGWLNPNSSSALLSRLRNEGWFKLHSEYLLGIEENRRQTNSHFCI

Homology

[Close]

BLAST of CcUC11G212090 vs. NCBI nr
Match: KAG6605012.1 (hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 29 LEVCNLEVRSMKASSLQGIVKPPLGWLNPNSSSALLSRLRNEGWFKLHSEYLLGIEENRR 88
          L +  LEVR  KASSL GIVKPP+GW NPNSSS LLS+   EG F LH + LLGI++NR 
Sbjct: 28 LFIPGLEVRFRKASSLHGIVKPPIGWQNPNSSSDLLSKSTKEGCFSLHFQNLLGIKKNRW 87

Query: 89 QTNSH 94
          QT SH
Sbjct: 88 QTESH 92

[Close]

BLAST of CcUC11G212090 vs. NCBI nr
Match: KAG6571061.1 (hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 33 NLEVRSMKASSLQGIVKPPLGWLNPNSSSALLSRLRNEGWFKLHSEYLLGI 84
          NLEV SMKASSLQ +V PP+GWLNPNSSSALLS+ +NEGW  + +E++ G+
Sbjct: 36 NLEVTSMKASSLQEMVNPPVGWLNPNSSSALLSKSKNEGW-NITNEFIEGV 85

[Close]

BLAST of CcUC11G212090 vs. NCBI nr
Match: KAF4382035.1 (hypothetical protein G4B88_006667 [Cannabis sativa])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 3   PHSLELRRWLGPSFPTEC----HNIANPIGLEVC-NLEVRSMKASSLQGIVKPPLGWLNP 62
           PHS+       PSFP        +I     L +C  L++   K    +GIV+PP+GW NP
Sbjct: 63  PHSVHTPG--SPSFPHGFIEWPESINGVFVLRICYGLQLIFQKLGETRGIVRPPVGWSNP 122

Query: 63  NSSSALLSRLRNEGWFK 75
           NSSSA  ++  N+GWFK
Sbjct: 123 NSSSARFNKFWNKGWFK 137

[Close]

BLAST of CcUC11G212090 vs. ExPASy TrEMBL
Match: A0A7J6GGK7 (Glutamine amidotransferase type-1 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_006667 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 3   PHSLELRRWLGPSFPTEC----HNIANPIGLEVC-NLEVRSMKASSLQGIVKPPLGWLNP 62
           PHS+       PSFP        +I     L +C  L++   K    +GIV+PP+GW NP
Sbjct: 63  PHSVHTPG--SPSFPHGFIEWPESINGVFVLRICYGLQLIFQKLGETRGIVRPPVGWSNP 122

Query: 63  NSSSALLSRLRNEGWFK 75
           NSSSA  ++  N+GWFK
Sbjct: 123 NSSSARFNKFWNKGWFK 137

The following BLAST results are available for this feature:

BLAST of CcUC11G212090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605012.1	1.4e-12	64.62	hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571061.1	3.1e-09	66.67	hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF4382035.1	2.3e-04	40.26	hypothetical protein G4B88_006667 [Cannabis sativa]	[more]

BLAST of CcUC11G212090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC11G212090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6GGK7	1.1e-04	40.26	Glutamine amidotransferase type-1 domain-containing protein OS=Cannabis sativa O...	[more]

BLAST of CcUC11G212090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G212090.1	CcUC11G212090.1	mRNA