CcUC11G211050 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G211050
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RRM domain-containing protein
Location	CicolChr11: 3004393 .. 3010820 (-)
RNA-Seq Expression	CcUC11G211050
Synteny	CcUC11G211050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGCAAGTGTCGAGCAATGCTAGACATGGGTGCTGTGGAGATGAGGTGGTTGCGCTAGTTTTCGCGGTGGCCGTCGCTATGAGGTTTTTTGTGGATAAGGTTGGGCTGATGTGTTGGAGCGATGGAGGAACCGCCATGGCTGCCTTTTCTTCTCGGTCGTTAATTTCCGTTTGAACTTGCACTTCTCCCACTTGACTTTTAATTTTGTTAATAGCTTTCTAAATTTTGAAAAAAATTTAATAGGTTAATTGGCCAATTGGATATAAATCTAAATTTTATGTCGGGTAGAAATCAAACTTTAAACTTTATGAATTGTAGATTTGTAAATTTTTAAAGCTTATCTTCGTTATTGAACACAAAATTAAAATTTCAAAAATCTATTAGATATAAAGAATTGTTAAGACTTTTGTTTTAAGACTTGTTGGATGCAAAATTAAAAGTTAAGAGACCTGTCAAACACTTTTGAAAGTTTAGGATCAAATAAATATAAATTTCAAATTTCAAAATTTAAAGGCTAAGCTTGTAATTTAAATTGAAATGTATGTGAGGTTAAATTATACAAAATATTTGTAACCTTTGGGTTAAATTTTAATTATGTCTCTAAACTTGAACATTGTTACAAAAAGTACCATTGAACTATGAAATTGTTTTCGATAAAACAAAGTATGTCAATTTATGTGGTAGTTGATGTGTGAAAATTAAAATATCTTCATACTTCTGTTTACAAATATAAAGAAGATTAAGATTGACGTTACCATTTTGGCTTCTCTTAGAGATGTTTTCATAAGTAGGAAAATTGTTGAAAATAATTACAAATATAGCAAAATTTTAATTACAAATATAGCAAAATTTTTCTTTCTATTTGTTCTAGATCACGATAGATCTAGTTAGACATCTATTGTGGTCTATCACAGATAGAAAATAAAATTTTGTTATATTCGTAAATAGTTTGATATATATATTTTTTTTTTCTATTTATAATCATTTTCCTTTCTTTTATAACTATTTGGTTTATTTAGAAAAAGAGTTTGCATTTTTTTTCCTTATTATTCTTTACAAATAGTTCTCATCTTTCTTAAAGATGTATTCAAATTCATTGTCAAACTCAACACTAAGGGATATCAAATCAAATAAATTCATATATAGAATTATTGTGCTAAACTAAATAGTGTTATCAAATGAGACCTTAGTTTGTTATTTTAAAATATGAATTTAGTTTCATTTGAAGTATCATGAAATCATTCTTAGCATGGGGACTATTTTACCTGAGTAAAAGTTTAGTATTTATTTCATTTTTTATCTCTAAACTTGTTTCAAGTGTTATTGCTTTGATGCTTTTGATTCTATCTTGCAGTTGGCATGAGAAGATACAAAGTGAAAGGAATGTCTTAGTTCTATCTACTTTCAAATATCAATATTTTAGTTCTTAATTCTTATTTATTTATTTGTTTTTGTTAAAAACCACTTTAGTCATTGTGCAAACATGATTGATTAGATACCAAATTTTGTTACATAAATTATAAAAATTAATGATAGTAATTATATAAATGACATCAAAACAAAAATCGTGGAAAAATATGGACTAAAACATCTTGACTACGAATGTAAACAATAAGAACTTATGATGTGCAGCAAATTCTTTAAAAATAATATTAAATAATAAATTTATTTCCTAAACTTTAATTGATGTGTAAGCCAACATTTCAAGTAGTGAGTGGAGAAGAGCGAACAATGAAACCCAGGTCACTGATGGAGAATTTCAACTCTATTATCATGATTATTATTATTTCTTCTCTTAATTGAAGAAAAAAAATGAAAAATATAAAATAACAAGTAAATTAAAACAATAGTAATTTCTAGTATAGGTGTGTACAAACCAATTATGCATTTTGTTCTTGATGGTTTGATAATATTATAACTCTCTCATTTGAATTACGTTTATTATTGGATAAATTGTATTAGACCCTTCAAATTTTGAAATTTTGATAATAATGTATATAATAAGTATAATGGGCTAAACATTTAATTGTGCGTTCATTCAAAGTTTGATTTCTTCGAGACTTTAAAATTACAAAATTAAAAAAAAAAAATGTAAGTTTAGAACGTATTAGATATCGTTCGAGCCAAAAGATTCAATATTCAACTTGGTCAACTAGTTTTGATAACTATTAAACTTAAAATTTATGGTTCATTTATGTTTTTTTAAAATTTTATAGATAAATAAACACAAATCTCTCCAATTTTGTGATTAGTAGTAATTTACAGGTGGGCGGTAGGCATGTTCTTTTCCCTCCCCTCTTTACGATATGTCGTTAGATTTGGCTCTTACTTCCGACATGTCGATTAACGGTTCCTACAAATTAGCAAAAGCGATTTCGAGTTTAACATTGGGAAAGGGAGTCCAGTAGTGTTCTTCTCGACTTTTTTCATTCTCCTCCGAGATTGGATTTTCACGGCGGCCATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGGTCAATTCCTCCACCAACCGGGTTCGCTCCTTCCATCTTCTTATGTGACTGTAGATAATAGTGTCACTTCGTGTATACTTCAGAATTATGCAGCCCTTTAGGTGTTTCTGATGGAAATTTTGATTGTTTGGATATAAGTTTGTGATTAGTTTTCTTTTCTTCTTATTTTGTTCAAGGCTACTTGAAGTTCAGAGATTAATTCAAACTCAATTGTTTAGTTTATGACGTTTCTTTAGGAGTATAGACGTGGTTTGAGTTACTGGATATGGTGGAAAAAACTGGATTTGTGGTGAAGGTTCTTTGCTATTTTGGAGATTTGGAGAATTTGAGTCGTTAGTTTACTTTTGTTTCACTGAAATGCTTCCATGACATGTATGTGTCATGTATTTGTTAAAATGCTTCAATTAGGCATGTTGATCTTTTTATGCGTTCGAATGGCTTTGTTACATGTGGTTTCCTAATGTAATTCTAGTTGAACACTTCGATTTGGTCATCAGATTATCAATGATCGTACTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCGGCTATTGATGCCATCAAAGACATGGATGGAAGGGTATGTTAATTTATAGCTGGAATACAAATCTTCAAGTGTTGCTTGGTCATATATTTTTCATTTTGATTTTGAGTCTTGGGTTGGCTTTGAATTAGACTATTGAAGGTCGGGTCGTCAGAGTTAATGGAGTGAAGTCTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAACCGGTTCGATGTAGAGAGGGATGTGAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATACCGTCACAAAGGTAGAAATAATGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGGATACGGGCATTCACAAGATCGTGATCTGCCAAAGGATAAATTGTTGGATAGGGATCCAGAGTTGGAAAAAACTTCCAAGGATAATGAGAAGGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGACCATGGTGAAGATTGGAGTGGAGGTGGAGGCATTGATAACACTGATGATTATGATAGAAGTCTTGACAATGATAGAGATCAACTCTCAAGGAGAGATAACGGGTGAGTCTGTCTTCAAACTTATTGAAATCAATGTTAAGTTGTTTTAATATAAATGTTCTGTTTATCTTTGGTTAGTCATATGACTAATTTGCATATCTGCAGCATGGTGTTGAAATTTTAAGGTTGTCGACAATTATTGTGATTGGGATGTCTGATTATTTCTAGGTTTTTGATAGTTTTGATCTGGGCAGTTAGTGATTCCAGAAATTTTTTAGAGATCTTGAAAGCACTTTCATTGGGTTTATATTAAGGGCACTGGACAGATGGGAAAGAAATTCCTACTAGCAAATTTCACAACTAGATGGCTGTTCAGTACAGGCATGTTCAAAACAATGGATCTGCTGTTACAACGTTCAGAGAGATGAATTAAATTATGAATTTTTCTGTAGGCACCACTTCGAAAATGCTTCCACATAATTCTTAGCTCATTTTAGTGCTTGTATAGTCTTGTCAAATTTTAAAACCATCTTTAGTTTTTCTTTTCTCCAAATGTACAGACCTTTCTCCATTACTTACGTATCTGTATGGTGTAATCCTCTATTGTAAGGAAATGGTTCCCTTTAACTACTACAACTTAATTTTTATTTATTTATTTTATTTATTTATTTATTTATTTTTTTTTTGCAAATTGGAGGAATCTTTTGTAAATCCCATTGGATGGGTTATCTTTTGTATCATTTCATTCAAACAATGAAATTTTTTCCTATCCAAAATAATAATAATAAATAAATAAACAAGAAGTAAAGGAAGAGGAAAAATTGCATATGTTCTTCCCTCCTGTTTCGTAGAAAGGATGAGGGAGTCACTTTTTGGTTATGGTTATATGATGCTATTATGGCTTCTCTTTTCAGTCTTACAATTGATCCAGATCTTGCCATTACTTCCCTCCTGTTTCATTAAAAAAATGGAGAAAGTGGAATAACCTTTTGGCCATGATTATGTGATTACTTATTATGGCTTCTGTTTTCAGTCTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCCAGTGATGATTATATCCATGAAGTATGCTTACCATATTTCAACTTTTAGATTTTCTCCATTAAAAGGTTACAACTGACTAATAGGCATCTCATGCAACTTTTGCTCTTATTGTTTGCGTTGTAGTTAAGGGAACAACTGGAGATGTCAACAGAAAGATTGGAAGAACTTAGAAAAGAGGTCTGTTTCTATATATAGTTGACATTGACTAAGGAGTGGCTTGATGATTCTTTTTTCCTTGCCGAAGAGAGAGTTGGTCATTTGGAAATGGCTGGCAAAATTTTCAGAAAACTTGAATGTGGATTAGCATAATTTAATACTATCAGTCTGAAACTTGCTTCAAATATATATACATATAGGTCCCAAACAAATATGAGACCCATGCTGCAGTTCATACTTGCATTTGAATCTAACTGTAGTTTTGTGCAATGTTCTATAACTTGTTTTGCATCATTCTTTAAGATATCATGATTGCACTTGAATTTAAGGCCTTAGAGGTTTTCCTGTTCAGATTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGGAAACCTTGTAGTTGAGTTGCAAAAGAAAGCCAAGGTAAAGAAATAATTTTATAACTTGCAACCATAATACTTTTGTCGTGTTCTCATTGTTACCCCGTCCCTTGAGGTTTATAACTAATATTGAGTTCATGTCCAACTGACTTGGATCCAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGTTGACCAAGGTCGTCACCTGTTTAATATTTTACGTTGTTTAGAAACTTAATTGGCAATGATAATTTTTGTTATGCACATTACCTGCAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAGCCAGTGAACAAGAACTTCAGGTTTGTGTTTCAACATTAGACAGGATCTTGTTGGAACAATTGTGCTATGTATCAATATTTCGTAGGGAATCTTACATATGACATACATTTGCTATTATCATTTTATGAAAAGACAAGAATATTTTTATCTATGTCAGTTATCAGAAAATTTTCATATATTATATGAATGCAAGTATGTGTGAACATTACTTAAATCTCCATCTCTATGTCCGATTACTCTTCTCCAAAGATGTATACTTGTAATTCATCCTTTTGACATTGCACATTAATGAATAAAACAATTTTACCATTTCTTACTTTACAGGCTCTGGTTGAATCAACCACAATAGAGAGTGATGTTGGATGAAGTATGAAGTTCCAGCCAATTGCAATTCATGTCATAAGCCGAAGAGGCTGCATCGTGCAATTTTATTGGCATGAAACTCTTTGCCGTGGGTATTCATTGTCTTTCTGTTCATACTGATGACAAGTTGTGATGTAGAATTCGCCTGTAACCTAATTTTTCCCAAGATTAAGCTGTCCATTTATTTAATGGTACGTTCACAATCAACTATGCACATGTTTTTACTTGCTTTTAGCTTCTGCAGAGGTTCATCTCACTTTTGTCAAGTTAGATAGGCAAAGATATATTGAAAATTGATTCTAACATCCAAGTAGTTTTTTCCAGCTTGCCTGAAGTTCCTTCCCATGAAATGTAATTTGAAAGCTTAGGTTGTAATCCTTTTCCAAGAACATTTCGATATCATTAAATATCATCCCCACTTATCTTTT

mRNA sequence

ATGGATGAGCAAGTGTCGAGCAATGCTAGACATGGGTGCTGTGGAGATGAGGTGGTTGCGCTAGTTTTCGCGGTGGCCGTCGCTATGAGCAAAAGCGATTTCGAGTTTAACATTGGGAAAGGGAGTCCAGTAGTGTTCTTCTCGACTTTTTTCATTCTCCTCCGAGATTGGATTTTCACGGCGGCCATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTACTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCGGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGTCGGGTCGTCAGAGTTAATGGAGTGAAGTCTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAACCGGTTCGATGTAGAGAGGGATGTGAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATACCGTCACAAAGGTAGAAATAATGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGGATACGGGCATTCACAAGATCGTGATCTGCCAAAGGATAAATTGTTGGATAGGGATCCAGAGTTGGAAAAAACTTCCAAGGATAATGAGAAGGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGACCATGGTGAAGATTGGAGTGGAGGTGGAGGCATTGATAACACTGATGATTATGATAGAAGTCTTGACAATGATAGAGATCAACTCTCAAGGAGAGATAACGGTCTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCCAGTGATGATTATATCCATGAATTAAGGGAACAACTGGAGATGTCAACAGAAAGATTGGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGGAAACCTTGTAGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGTTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAGCCAGTGAACAAGAACTTCAGGCTCTGGTTGAATCAACCACAATAGAGAGTGATGTTGGATGAAGTATGAAGTTCCAGCCAATTGCAATTCATGTCATAAGCCGAAGAGGCTGCATCGTGCAATTTTATTGGCATGAAACTCTTTGCCGTGGGTATTCATTGTCTTTCTGTTCATACTGATGACAAGTTGTGATGTAGAATTCGCCTGTAACCTAATTTTTCCCAAGATTAAGCTGTCCATTTATTTAATGGTACGTTCACAATCAACTATGCACATGTTTTTACTTGCTTTTAGCTTCTGCAGAGGTTCATCTCACTTTTGTCAAGTTAGATAGGCAAAGATATATTGAAAATTGATTCTAACATCCAAGTAGTTTTTTCCAGCTTGCCTGAAGTTCCTTCCCATGAAATGTAATTTGAAAGCTTAGGTTGTAATCCTTTTCCAAGAACATTTCGATATCATTAAATATCATCCCCACTTATCTTTT

Coding sequence (CDS)

ATGGATGAGCAAGTGTCGAGCAATGCTAGACATGGGTGCTGTGGAGATGAGGTGGTTGCGCTAGTTTTCGCGGTGGCCGTCGCTATGAGCAAAAGCGATTTCGAGTTTAACATTGGGAAAGGGAGTCCAGTAGTGTTCTTCTCGACTTTTTTCATTCTCCTCCGAGATTGGATTTTCACGGCGGCCATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTACTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCGGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGTCGGGTCGTCAGAGTTAATGGAGTGAAGTCTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAACCGGTTCGATGTAGAGAGGGATGTGAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATACCGTCACAAAGGTAGAAATAATGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGGATACGGGCATTCACAAGATCGTGATCTGCCAAAGGATAAATTGTTGGATAGGGATCCAGAGTTGGAAAAAACTTCCAAGGATAATGAGAAGGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGACCATGGTGAAGATTGGAGTGGAGGTGGAGGCATTGATAACACTGATGATTATGATAGAAGTCTTGACAATGATAGAGATCAACTCTCAAGGAGAGATAACGGTCTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCCAGTGATGATTATATCCATGAATTAAGGGAACAACTGGAGATGTCAACAGAAAGATTGGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGGAAACCTTGTAGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGTTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAGCCAGTGAACAAGAACTTCAGGCTCTGGTTGAATCAACCACAATAGAGAGTGATGTTGGATGA

Protein sequence

MDEQVSSNARHGCCGDEVVALVFAVAVAMSKSDFEFNIGKGSPVVFFSTFFILLRDWIFTAAMTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRYRHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDRSLDNDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG

Homology

[Close]

BLAST of CcUC11G211050 vs. NCBI nr
Match: XP_038889756.1 (serine/threonine-protein kinase prpf4B [Benincasa hispida])

HSP 1 Score: 610.5 bits (1573), Expect = 1.0e-170
Identity = 320/346 (92.49%), Postives = 332/346 (95.95%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
           IDAIKDMDGR+IEGRVVRVNGVKSR GGRFGRE NRFDVERDVSWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRSIEGRVVRVNGVKSRSGGRFGREGNRFDVERDVSWERDRDRGRDYDHDRY 120

Query: 183 RHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 242
           RH+GRNNDWSRDRDRSREHDLDKERGY HSQD D PKDKLLDRDPELEK+SKDNEKVHDL
Sbjct: 121 RHRGRNNDWSRDRDRSREHDLDKERGYEHSQDHDPPKDKLLDRDPELEKSSKDNEKVHDL 180

Query: 243 KLNHDQDWEKDHGEDWSGGGGIDNTDDYDRSLDNDRDQLSRRDNGLTIEGRTARDLSSDS 302
           KLNHDQD EK+HG DW GGGGIDN DDY++SLDNDR+QLSRRDNGLT EGRTARDLSSDS
Sbjct: 181 KLNHDQDSEKNHGADWIGGGGIDNADDYEKSLDNDRNQLSRRDNGLTSEGRTARDLSSDS 240

Query: 303 SDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKKAKKLEDALISAKKR 362
           SDDYIHEL+EQLE+STERLEELRKE+SQIEERSGEK  LV+ELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVIELQKKAKKLEDALISAKKR 300

Query: 363 SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           SSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVEST IESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CcUC11G211050 vs. NCBI nr
Match: TYK10694.1 (zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 607.4 bits (1565), Expect = 8.8e-170
Identity = 318/346 (91.91%), Postives = 330/346 (95.38%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
           IDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 183 RHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 242
           RH+GRNNDWSRD DRSREHDLDKERGY HSQDRDLPKD+ LDRDPELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 243 KLNHDQDWEKDHGEDWSGGGGIDNTDDYDRSLDNDRDQLSRRDNGLTIEGRTARDLSSDS 302
           KLNHDQDWEKDHG D SGGGGID TDDYD+SLDNDRDQ+ RRDNGLTIEGRTARDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDS 240

Query: 303 SDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKKAKKLEDALISAKKR 362
           SDDYIHEL+EQLE+STERLEELRKE+SQIEERSGEK  LVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 363 SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CcUC11G211050 vs. NCBI nr
Match: XP_008457973.1 (PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061579.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 604.0 bits (1556), Expect = 9.7e-169
Identity = 316/346 (91.33%), Postives = 329/346 (95.09%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
           IDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 183 RHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 242
           RH+GRNNDWSRD DRSREHDLDKERGY HSQDRDLPKD+ LDRDPELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 243 KLNHDQDWEKDHGEDWSGGGGIDNTDDYDRSLDNDRDQLSRRDNGLTIEGRTARDLSSDS 302
           KLNHDQDWEKDHG D SGGGGID TDDYD+SLDNDRDQ+ RRDN LTIEGRTARDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 303 SDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKKAKKLEDALISAKKR 362
           SDDYIHEL+EQLE+STERLEELRKE+SQIEERSGEK  LVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 363 SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CcUC11G211050 vs. NCBI nr
Match: XP_004139331.2 (U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothetical protein Csa_019381 [Cucumis sativus])

HSP 1 Score: 594.3 bits (1531), Expect = 7.7e-166
Identity = 317/360 (88.06%), Postives = 329/360 (91.39%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
           IDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDVSWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 183 RHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 242
           RH+GRNNDWSRD DRSREHDLDKERGY HSQDRDLP+D+ LDR+PELEKTSKDNEKVHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 243 KLNHDQDWEKDHGEDWSGGGGIDNTDDY--------------DRSLDNDRDQLSRRDNGL 302
           KLNHDQDWEKDHG D SGG GID TDDY              D+SLDNDRDQ+ RRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240

Query: 303 TIEGRTARDLSSDSSDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKK 362
           TIEGRTARDLSSDSSDDYIHEL+EQLE+STERLEELRKE+SQIEERSGEK  LVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 363 AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360

[Close]

BLAST of CcUC11G211050 vs. NCBI nr
Match: XP_023547216.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo])

HSP 1 Score: 591.7 bits (1524), Expect = 5.0e-165
Identity = 311/346 (89.88%), Postives = 327/346 (94.51%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
           IDAIKDMDGRTIEGRVVRVNGV +RGGGRFGRESNRFDVERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 183 RHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 242
           R +GRNNDWSR+RDRSREHDLDKER Y HSQDRDLPKD LLDR+PELEK  K NE+  DL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 243 KLNHDQDWEKDHGEDWSGGGGIDNTDDYDRSLDNDRDQLSRRDNGLTIEGRTARDLSSDS 302
           KL+H QDWEKDH  DW+GGGGIDNTDDYD+SL +DRDQLSRRDNGL IEGRTAR+LSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 303 SDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKKAKKLEDALISAKKR 362
           SDDYIHEL+EQLE+STER EELRKEISQIEER+GEKG LVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 363 SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           SSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVEST IESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CcUC11G211050 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.9e-14
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 69  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIK 128
           S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 129 DMDGRTIEGRVVRVNGVKSR-GGGRFG 154
            +DGR + GRVV+VN    R  GG FG
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFG 126

[Close]

BLAST of CcUC11G211050 vs. ExPASy Swiss-Prot
Match: Q18409 (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.5e-12
Identity = 61/170 (35.88%), Postives = 83/170 (48.82%), Query Frame = 0


Query: 68  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSAIDAIK 127
           D+ +YVGGLP DAT   L  IFD +G +  V +      R   + FV + + R A DA++
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWV----ARRPPGFAFVEYDDVRDAEDAVR 61

Query: 128 DMDGRTIEG---RVVRVNGVKSRGGGR---------FGRESNRFDVERDVSWERDRDRGR 187
            +DG  I G   RV    G +  GGGR          GR+ + +  +R  S  R RDRGR
Sbjct: 62  ALDGSRICGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGR 121

Query: 188 DYDHDRYRHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDR 226
           D   DR R + R+    R R+RSRE +  + R     Q+RD    K   R
Sbjct: 122 DRSRDRSRDRSRDRSRDRSRERSRERERTRSRSRS-PQERDRSHSKSRSR 166

[Close]

BLAST of CcUC11G211050 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.1e-11
Identity = 63/179 (35.20%), Postives = 85/179 (47.49%), Query Frame = 0


Query: 68  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAI 127
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 128 KDMDGRTIEGRVVRVNGVKSRGGGR---------------FGRESNRFDVERDVSWERDR 187
           K M GR +  +V+ VN  + + GG                 G E   F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 188 DRGRDYDHDRYR----HKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRD 227
               D D +R+R     + R  D    RDR  + DL++ER      DR +  D   DRD
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYM--DGRRDRD 186

[Close]

BLAST of CcUC11G211050 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-09
Identity = 56/156 (35.90%), Postives = 81/156 (51.92%), Query Frame = 0


Query: 67  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-TTRGKCYGFVTFTNPRSAIDA 126
           D+  ++VGGL ++ TE+SL ++F  YG V  V ++ DR + R + +GFVTF NP  A DA
Sbjct: 4   DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63

Query: 127 IKDMDGRTIEGRVVRVN--GVKS---RGGGRFGRESNR--FDVERDVSWERDRDRGRDYD 186
           +  M+G++++GR +RV+  G  S   RGG R G    R  F   R      DR  G    
Sbjct: 64  MMAMNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRGFFRGGRGRGGGGDRGYGGSSR 123

Query: 187 HDRYRHKGRNNDWSRDRDRSREHDLDKERGYGHSQD 215
            +  R  G  +  SRD    R H    +R  G  +D
Sbjct: 124 FEN-RSGGYQSSGSRDY-YGRSHGSYGDRSGGSYRD 157

[Close]

BLAST of CcUC11G211050 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.9e-08
Identity = 89/347 (25.65%), Postives = 151/347 (43.52%), Query Frame = 0


Query: 66  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRTTRGKCYGFVTFTNPRSAID 125
           D   +++V  + YD TE  LRR F++YG +  + ++ N R+ + + Y F+ + + R    
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHS 159

Query: 126 AIKDMDGRTIEGRVVRVNGVKSR----------GGGRFG----------RESNRFDV--- 185
           A K  DG+ I+GR V V+  + R          GGG  G          R S R D    
Sbjct: 160 AYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRY 219

Query: 186 -ERDVSWERDRD---RGRDYDHDRYRHKGRNNDWSRDRDRSRE-HDLDKERGYGHSQDRD 245
            ERD   ER+RD   R R+ D +R R + R+ +  R R RSRE  +  + R     +D+D
Sbjct: 220 DERDRDRERERDRRERSRERDKERERRRSRSRE-RRRRSRSREKEERKRSRERSRDKDKD 279

Query: 246 LPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEK---------------DHGEDWSGG 305
             KDK  ++D + ++  K   +  + K   D+D EK                  +  +G 
Sbjct: 280 KDKDKDKEKDKDKDRDRKRRSRSRERKRERDRDREKKEDRVEGEVPESVDVPQDDAQTGD 339

Query: 306 GGIDNTD----------DYDRSLDNDRDQLSRRDNGLTIEGRTARDLSSDSSDDYIHELR 353
            GID  +          D DR  D ++D+   RD       R+ RD   D   +   + R
Sbjct: 340 LGIDGIELKQEPEEKNRDRDRERDREKDRDKDRDRDRD-RRRSHRDRERDKDRERDRDRR 399

[Close]

BLAST of CcUC11G211050 vs. ExPASy TrEMBL
Match: A0A5D3CHM1 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00030 PE=4 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 4.2e-170
Identity = 318/346 (91.91%), Postives = 330/346 (95.38%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
           IDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 183 RHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 242
           RH+GRNNDWSRD DRSREHDLDKERGY HSQDRDLPKD+ LDRDPELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 243 KLNHDQDWEKDHGEDWSGGGGIDNTDDYDRSLDNDRDQLSRRDNGLTIEGRTARDLSSDS 302
           KLNHDQDWEKDHG D SGGGGID TDDYD+SLDNDRDQ+ RRDNGLTIEGRTARDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDS 240

Query: 303 SDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKKAKKLEDALISAKKR 362
           SDDYIHEL+EQLE+STERLEELRKE+SQIEERSGEK  LVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 363 SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CcUC11G211050 vs. ExPASy TrEMBL
Match: A0A5A7V7D5 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001420 PE=4 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 4.7e-169
Identity = 316/346 (91.33%), Postives = 329/346 (95.09%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
           IDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 183 RHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 242
           RH+GRNNDWSRD DRSREHDLDKERGY HSQDRDLPKD+ LDRDPELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 243 KLNHDQDWEKDHGEDWSGGGGIDNTDDYDRSLDNDRDQLSRRDNGLTIEGRTARDLSSDS 302
           KLNHDQDWEKDHG D SGGGGID TDDYD+SLDNDRDQ+ RRDN LTIEGRTARDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 303 SDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKKAKKLEDALISAKKR 362
           SDDYIHEL+EQLE+STERLEELRKE+SQIEERSGEK  LVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 363 SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CcUC11G211050 vs. ExPASy TrEMBL
Match: A0A1S3C6W1 (zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC103497531 PE=4 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 4.7e-169
Identity = 316/346 (91.33%), Postives = 329/346 (95.09%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
           IDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 183 RHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 242
           RH+GRNNDWSRD DRSREHDLDKERGY HSQDRDLPKD+ LDRDPELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 243 KLNHDQDWEKDHGEDWSGGGGIDNTDDYDRSLDNDRDQLSRRDNGLTIEGRTARDLSSDS 302
           KLNHDQDWEKDHG D SGGGGID TDDYD+SLDNDRDQ+ RRDN LTIEGRTARDLSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 303 SDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKKAKKLEDALISAKKR 362
           SDDYIHEL+EQLE+STERLEELRKE+SQIEERSGEK  LVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 363 SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CcUC11G211050 vs. ExPASy TrEMBL
Match: A0A0A0LIV9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV=1)

HSP 1 Score: 594.3 bits (1531), Expect = 3.7e-166
Identity = 317/360 (88.06%), Postives = 329/360 (91.39%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
           IDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDVSWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 183 RHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 242
           RH+GRNNDWSRD DRSREHDLDKERGY HSQDRDLP+D+ LDR+PELEKTSKDNEKVHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 243 KLNHDQDWEKDHGEDWSGGGGIDNTDDY--------------DRSLDNDRDQLSRRDNGL 302
           KLNHDQDWEKDHG D SGG GID TDDY              D+SLDNDRDQ+ RRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240

Query: 303 TIEGRTARDLSSDSSDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKK 362
           TIEGRTARDLSSDSSDDYIHEL+EQLE+STERLEELRKE+SQIEERSGEK  LVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 363 AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVEST IESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360

[Close]

BLAST of CcUC11G211050 vs. ExPASy TrEMBL
Match: A0A6J1G3E0 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC111450445 PE=4 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 5.4e-165
Identity = 311/346 (89.88%), Postives = 327/346 (94.51%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR+TRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
           IDAIKDMDGRTIEGRVVRVNGV +RGGGRFGRESNRFDVERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 183 RHKGRNNDWSRDRDRSREHDLDKERGYGHSQDRDLPKDKLLDRDPELEKTSKDNEKVHDL 242
           R +GRNNDWSR+RDRSREHDLDKER Y HSQDRDLPKD LLDR+PELEK  K NE+  DL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 243 KLNHDQDWEKDHGEDWSGGGGIDNTDDYDRSLDNDRDQLSRRDNGLTIEGRTARDLSSDS 302
           KL+H QDWEKDH  DW+GGGGIDNTDDYD+SL +DRDQLSRRDNGL IEGRTAR+LSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 303 SDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKKAKKLEDALISAKKR 362
           SDDYIHEL+EQLE+STER EELRKEISQIEER+GEKG LVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 363 SSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           SSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVEST IESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CcUC11G211050 vs. TAIR 10
Match: AT5G19960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 212.6 bits (540), Expect = 5.9e-55
Identity = 149/348 (42.82%), Postives = 211/348 (60.63%), Query Frame = 0


Query: 63  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTTRGKCYGFVTFTNPRSA 122
           MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDR+ RGKCYGFVTF+N RSA
Sbjct: 1   MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60

Query: 123 IDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRY 182
            DAI+DMDG++I GR VRVN V +R GGR      R  ++    W+R  DR  D +++R 
Sbjct: 61  DDAIEDMDGKSIGGRAVRVNDVTTR-GGRMNPGPGR--LQPHGGWDRSPDRRSDGNYERD 120

Query: 183 RHKGRNNDWSRDRDRSREHD-LDKERGYGHSQDRDLPKD-KLLDRDPELEKTSKDNEKVH 242
           R+  R+ +  R +DR ++H  ++KER Y HS D +   D  ++DR+   E+    +E   
Sbjct: 121 RYSDRSRERDRSQDRRKDHRYIEKERAYEHSHDFERRNDHDMVDRNGYKERVFDGDE--- 180

Query: 243 DLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDRSLDNDRDQLSRRDNGLTIEGRTARDLSS 302
                   DW  D       G GI+ T     S    R Q ++R++   ++G   RD  S
Sbjct: 181 -------GDWRGDRSY-VDNGRGINGT-----SAHEGRSQETKREDSTILDGGRGRDHFS 240

Query: 303 DSSDDYIHELREQLEMSTERLEELRKEISQIEERSGEKGNLVVELQKKAKKLEDALISAK 362
           +SS D  H+++E LE   +  E LR E+  +EER   K  +  ELQKK+K+LED LI+ K
Sbjct: 241 NSSGD--HQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLINEK 300

Query: 363 KRSSFRQMQLTKLHKSFLLVKDYSERLKASEQELQALVESTTIESDVG 409
           K  S R+ +L KLHKS+  V++ ++ LK  EQELQ LV S   E   G
Sbjct: 301 KLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAAREGVAG 327

[Close]

BLAST of CcUC11G211050 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-15
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 69  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIK 128
           S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 129 DMDGRTIEGRVVRVNGVKSR-GGGRFG 154
            +DGR + GRVV+VN    R  GG FG
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFG 126

[Close]

BLAST of CcUC11G211050 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-13
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 72  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMD 131
           +VGGL +   ++ L+R F  +G V+  KIINDR + R + +GFVTF + ++  DAI++M+
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 132 GRTIEGRVVRVNGVKSRGGGRFG 154
           G+ ++GRV+ VN  +SRG G  G
Sbjct: 69  GKELDGRVITVNEAQSRGSGGGG 91

[Close]

BLAST of CcUC11G211050 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-13
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 72  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMD 131
           +VGGL +   ++ L+R F  +G V+  KIINDR + R + +GFVTF + ++  DAI++M+
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 132 GRTIEGRVVRVNGVKSRGGGRFG 154
           G+ ++GRV+ VN  +SRG G  G
Sbjct: 69  GKELDGRVITVNEAQSRGSGGGG 91

[Close]

BLAST of CcUC11G211050 vs. TAIR 10
Match: AT4G39260.3 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-13
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 72  YVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRTT-RGKCYGFVTFTNPRSAIDAIKDMD 131
           +VGGL +   ++ L+R F  +G V+  KIINDR + R + +GFVTF + ++  DAI++M+
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 132 GRTIEGRVVRVNGVKSRGGGRFG 154
           G+ ++GRV+ VN  +SRG G  G
Sbjct: 69  GKELDGRVITVNEAQSRGSGGGG 91

The following BLAST results are available for this feature:

BLAST of CcUC11G211050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889756.1	1.0e-170	92.49	serine/threonine-protein kinase prpf4B [Benincasa hispida]	[more]
TYK10694.1	8.8e-170	91.91	zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]	[more]
XP_008457973.1	9.7e-169	91.33	PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061...	[more]
XP_004139331.2	7.7e-166	88.06	U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothet...	[more]
XP_023547216.1	5.0e-165	89.88	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC11G211050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	4.9e-14	48.28	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q18409	3.5e-12	35.88	Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=62...	[more]
O22703	5.1e-11	35.20	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q28IQ9	2.1e-09	35.90	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q66II8	8.9e-08	25.65	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp...	[more]

BLAST of CcUC11G211050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHM1	4.2e-170	91.91	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V7D5	4.7e-169	91.33	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C6W1	4.7e-169	91.33	zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LIV9	3.7e-166	88.06	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV...	[more]
A0A6J1G3E0	5.4e-165	89.88	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of CcUC11G211050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19960.1	5.9e-55	42.82	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	3.5e-15	48.28	glycine-rich RNA-binding protein 3	[more]
AT4G39260.1	1.9e-13	43.37	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	1.9e-13	43.37	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.3	1.9e-13	43.37	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 380..400
None	No IPR available	COILS	Coil	Coil	coord: 307..362
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..301
None	No IPR available	PANTHER	PTHR23147:SF172	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 63..406
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 63..406
None	No IPR available	CDD	cd00590	RRM_SF	coord: 71..142 e-value: 1.2623E-22 score: 88.9013
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 70..142 e-value: 3.4E-24 score: 96.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 71..140 e-value: 7.4E-22 score: 77.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 69..146 score: 19.638327
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 59..158 e-value: 7.5E-25 score: 89.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 65..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G211050.1	CcUC11G211050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding