CcUC11G209900 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC11G209900
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionThreonine synthase
LocationCicolChr11: 1844086 .. 1844466 (+)
RNA-Seq ExpressionCcUC11G209900
SyntenyCcUC11G209900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCTCCCTCTTCTCCTTCAACAACTCTCTCTCTTCCAAACCCGATTCTCTCTTTCGTCGTCCCGTTCGCCGGAATTCTTCCTCCCCTTTCACCGTCATCTGTTCCTCCTCCGCCACTTCCGACTCTGCCGCCTCCCCTGTTCTCGACTCATCTCCACCCCTCGGAGTTCACAGCCACCAATTCACTTGTGCCAATAACCAAGAAGATTCTCATCGCCGTTCTTCCGTAGTCGTTGACGTCGGCCATAATTTCTCGGCGAAGTATGTGCCGTTTGGTTCTGGCTATGATTCCTCCGAGTGGTACTCGCTTGACGAAATCGTTTATCGGAGTCGGTCCGGCGGGTTGCTGATGTTCAGCACAACATGGAAGCGTTGA

mRNA sequence

ATGGCCTCCTCCCTCTTCTCCTTCAACAACTCTCTCTCTTCCAAACCCGATTCTCTCTTTCGTCGTCCCGTTCGCCGGAATTCTTCCTCCCCTTTCACCGTCATCTGTTCCTCCTCCGCCACTTCCGACTCTGCCGCCTCCCCTGTTCTCGACTCATCTCCACCCCTCGGAGTTCACAGCCACCAATTCACTTGTGCCAATAACCAAGAAGATTCTCATCGCCGTTCTTCCGTAGTCGTTGACGTCGGCCATAATTTCTCGGCGAAGTATGTGCCGTTTGGTTCTGGCTATGATTCCTCCGAGTGGTACTCGCTTGACGAAATCGTTTATCGGAGTCGGTCCGGCGGGTTGCTGATGTTCAGCACAACATGGAAGCGTTGA

Coding sequence (CDS)

ATGGCCTCCTCCCTCTTCTCCTTCAACAACTCTCTCTCTTCCAAACCCGATTCTCTCTTTCGTCGTCCCGTTCGCCGGAATTCTTCCTCCCCTTTCACCGTCATCTGTTCCTCCTCCGCCACTTCCGACTCTGCCGCCTCCCCTGTTCTCGACTCATCTCCACCCCTCGGAGTTCACAGCCACCAATTCACTTGTGCCAATAACCAAGAAGATTCTCATCGCCGTTCTTCCGTAGTCGTTGACGTCGGCCATAATTTCTCGGCGAAGTATGTGCCGTTTGGTTCTGGCTATGATTCCTCCGAGTGGTACTCGCTTGACGAAATCGTTTATCGGAGTCGGTCCGGCGGGTTGCTGATGTTCAGCACAACATGGAAGCGTTGA

Protein sequence

MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHSHQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLLMFSTTWKR
Homology
BLAST of CcUC11G209900 vs. NCBI nr
Match: XP_038891002.1 (threonine synthase, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 187.2 bits (474), Expect = 8.7e-44
Identity = 100/118 (84.75%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHS 60
           MASSLFSFN S S+KPDSLF R  RRNSSSPFTV+C SSATSDSAASPVL SSPPLG   
Sbjct: 1   MASSLFSFNTSFSTKPDSLFHRSARRNSSSPFTVVC-SSATSDSAASPVLHSSPPLG--- 60

Query: 61  HQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
           HQF  AN Q+DSHRR SV VDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL
Sbjct: 61  HQFASANIQDDSHRRCSVAVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 114

BLAST of CcUC11G209900 vs. NCBI nr
Match: XP_008459597.1 (PREDICTED: threonine synthase, chloroplastic-like [Cucumis melo] >KAA0061477.1 threonine synthase [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHS 60
           MASSLF FN SLS KPDSL RRP RRNSSSPFT++C SSATSDSA SPV+DSS PLGVH+
Sbjct: 1   MASSLFPFNTSLSPKPDSLLRRPTRRNSSSPFTLVC-SSATSDSAPSPVIDSSLPLGVHT 60

Query: 61  HQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
           HQF     Q+DSHR  SV VDVGHNFSAKYVPFGSGYDSSEWYSLD+IVYRSRSGGLL
Sbjct: 61  HQF-----QDDSHRHRSVAVDVGHNFSAKYVPFGSGYDSSEWYSLDDIVYRSRSGGLL 112

BLAST of CcUC11G209900 vs. NCBI nr
Match: TYK10797.1 (threonine synthase [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHS 60
           MASSLF FN SLS KPDSL RRP RRNSSSPFT++C SSATSDSA SPV+DSS PLGVH+
Sbjct: 1   MASSLFPFNTSLSPKPDSLLRRPTRRNSSSPFTLVC-SSATSDSAPSPVIDSSLPLGVHT 60

Query: 61  HQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
           HQF     Q+DSHR  SV VDVGHNFSAKYVPFGSGYDSSEWYSLD+IVYRSRSGGLL
Sbjct: 61  HQF-----QDDSHRHRSVAVDVGHNFSAKYVPFGSGYDSSEWYSLDDIVYRSRSGGLL 112

BLAST of CcUC11G209900 vs. NCBI nr
Match: XP_004141067.1 (threonine synthase, chloroplastic [Cucumis sativus] >KGN60519.1 hypothetical protein Csa_019351 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 94/118 (79.66%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHS 60
           MASSLFSFN SLS KPDSLFRRP RRNSSSPFT++C SSATSDSA S V+DSS PLGVH+
Sbjct: 1   MASSLFSFNTSLSPKPDSLFRRPTRRNSSSPFTLVC-SSATSDSAPSHVIDSSLPLGVHT 60

Query: 61  HQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
           HQF     Q+DSHR  SV VD   NFSAKYVPFGSGYDSSEWYSLD+IVYRSRSGGLL
Sbjct: 61  HQF-----QDDSHRHRSVAVDADRNFSAKYVPFGSGYDSSEWYSLDDIVYRSRSGGLL 112

BLAST of CcUC11G209900 vs. NCBI nr
Match: XP_022946725.1 (threonine synthase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 90/118 (76.27%), Postives = 98/118 (83.05%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHS 60
           MASSLFSFN SLS KP SLFRRP+RRNSS PFT+ C  SATSDSAASPVLDSS PLG+ +
Sbjct: 1   MASSLFSFNTSLSPKPSSLFRRPLRRNSSPPFTIAC-PSATSDSAASPVLDSSLPLGLQN 60

Query: 61  HQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
            QF   + Q+DSHR  SV  D G NFSAKYVPFGSG+DSSEWYSLDEIVYRS+SGGLL
Sbjct: 61  PQFASVDIQDDSHRSRSVAADGGRNFSAKYVPFGSGFDSSEWYSLDEIVYRSQSGGLL 117

BLAST of CcUC11G209900 vs. ExPASy Swiss-Prot
Match: Q9MT28 (Threonine synthase, chloroplastic OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-10
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 67  NNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
           N +E++ R  S      HNFSA+YVPF +G +S EWYSLDEIVYRSRSGGLL
Sbjct: 58  NIREEARRHCS-----SHNFSARYVPFNAGPNSDEWYSLDEIVYRSRSGGLL 104

BLAST of CcUC11G209900 vs. ExPASy Swiss-Prot
Match: Q9S7B5 (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-07
Identity = 50/122 (40.98%), Postives = 70/122 (57.38%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPF----TVICSSSATSDSAASPVLDSSPPL 60
           MASS   FN S+SS      + P+RR+ S+       V+ S +A  ++  +P+  +  P 
Sbjct: 1   MASSCL-FNASVSSLNPK--QDPIRRHRSTSLLRHRPVVISCTADGNNIKAPIETAVKP- 60

Query: 61  GVHSHQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGG 119
               H+ T  N ++++ R  S  V   + FSAKYVPF +   S+E YSLDEIVYRSRSGG
Sbjct: 61  ---PHR-TEDNIRDEARRNRSNAV---NPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGG 111

BLAST of CcUC11G209900 vs. ExPASy Swiss-Prot
Match: Q9SSP5 (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.8e-06
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 0

Query: 24  VRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHSHQFTCANNQEDSHRRSSVVVDVG 83
           ++ +S++ FTV C+S       ASP +   PP      + +   N  D  RR    +   
Sbjct: 21  LKPHSAASFTVRCTS-------ASPAV---PPQTPQKPRRSPDENIRDEARRRPHQL--- 80

Query: 84  HNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
            N SA+YVPF +   S+E YSLDEIVYRS+SG LL
Sbjct: 81  QNLSARYVPFNAPPSSTESYSLDEIVYRSQSGALL 102

BLAST of CcUC11G209900 vs. ExPASy TrEMBL
Match: A0A5D3CFM9 (Threonine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001120 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-42
Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHS 60
           MASSLF FN SLS KPDSL RRP RRNSSSPFT++C SSATSDSA SPV+DSS PLGVH+
Sbjct: 1   MASSLFPFNTSLSPKPDSLLRRPTRRNSSSPFTLVC-SSATSDSAPSPVIDSSLPLGVHT 60

Query: 61  HQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
           HQF     Q+DSHR  SV VDVGHNFSAKYVPFGSGYDSSEWYSLD+IVYRSRSGGLL
Sbjct: 61  HQF-----QDDSHRHRSVAVDVGHNFSAKYVPFGSGYDSSEWYSLDDIVYRSRSGGLL 112

BLAST of CcUC11G209900 vs. ExPASy TrEMBL
Match: A0A5A7V3M7 (Threonine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00370 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-42
Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHS 60
           MASSLF FN SLS KPDSL RRP RRNSSSPFT++C SSATSDSA SPV+DSS PLGVH+
Sbjct: 1   MASSLFPFNTSLSPKPDSLLRRPTRRNSSSPFTLVC-SSATSDSAPSPVIDSSLPLGVHT 60

Query: 61  HQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
           HQF     Q+DSHR  SV VDVGHNFSAKYVPFGSGYDSSEWYSLD+IVYRSRSGGLL
Sbjct: 61  HQF-----QDDSHRHRSVAVDVGHNFSAKYVPFGSGYDSSEWYSLDDIVYRSRSGGLL 112

BLAST of CcUC11G209900 vs. ExPASy TrEMBL
Match: A0A1S3CB26 (Threonine synthase OS=Cucumis melo OX=3656 GN=LOC103498677 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-42
Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHS 60
           MASSLF FN SLS KPDSL RRP RRNSSSPFT++C SSATSDSA SPV+DSS PLGVH+
Sbjct: 1   MASSLFPFNTSLSPKPDSLLRRPTRRNSSSPFTLVC-SSATSDSAPSPVIDSSLPLGVHT 60

Query: 61  HQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
           HQF     Q+DSHR  SV VDVGHNFSAKYVPFGSGYDSSEWYSLD+IVYRSRSGGLL
Sbjct: 61  HQF-----QDDSHRHRSVAVDVGHNFSAKYVPFGSGYDSSEWYSLDDIVYRSRSGGLL 112

BLAST of CcUC11G209900 vs. ExPASy TrEMBL
Match: A0A0A0LHR0 (Threonine synthase OS=Cucumis sativus OX=3659 GN=Csa_2G000280 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.8e-41
Identity = 94/118 (79.66%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHS 60
           MASSLFSFN SLS KPDSLFRRP RRNSSSPFT++C SSATSDSA S V+DSS PLGVH+
Sbjct: 1   MASSLFSFNTSLSPKPDSLFRRPTRRNSSSPFTLVC-SSATSDSAPSHVIDSSLPLGVHT 60

Query: 61  HQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
           HQF     Q+DSHR  SV VD   NFSAKYVPFGSGYDSSEWYSLD+IVYRSRSGGLL
Sbjct: 61  HQF-----QDDSHRHRSVAVDADRNFSAKYVPFGSGYDSSEWYSLDDIVYRSRSGGLL 112

BLAST of CcUC11G209900 vs. ExPASy TrEMBL
Match: A0A6J1KA83 (Threonine synthase OS=Cucurbita maxima OX=3661 GN=LOC111493658 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.4e-39
Identity = 90/118 (76.27%), Postives = 97/118 (82.20%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHS 60
           M SSLFSFN SLS KP SLFRRP+RRNSS PFT+ C  SATSDS ASPVLDSS PLGV +
Sbjct: 1   MDSSLFSFNTSLSPKPSSLFRRPLRRNSSPPFTIAC-PSATSDSTASPVLDSSLPLGVQN 60

Query: 61  HQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
            QF C + Q+DSHR  SV  D G NFSAKYVPFGSG+DSSEWYSLDEIVYRS+SGGLL
Sbjct: 61  PQFACVDIQDDSHRSRSVAGDGGRNFSAKYVPFGSGFDSSEWYSLDEIVYRSQSGGLL 117

BLAST of CcUC11G209900 vs. TAIR 10
Match: AT4G29840.1 (Pyridoxal-5'-phosphate-dependent enzyme family protein )

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-08
Identity = 50/122 (40.98%), Postives = 70/122 (57.38%), Query Frame = 0

Query: 1   MASSLFSFNNSLSSKPDSLFRRPVRRNSSSPF----TVICSSSATSDSAASPVLDSSPPL 60
           MASS   FN S+SS      + P+RR+ S+       V+ S +A  ++  +P+  +  P 
Sbjct: 1   MASSCL-FNASVSSLNPK--QDPIRRHRSTSLLRHRPVVISCTADGNNIKAPIETAVKP- 60

Query: 61  GVHSHQFTCANNQEDSHRRSSVVVDVGHNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGG 119
               H+ T  N ++++ R  S  V   + FSAKYVPF +   S+E YSLDEIVYRSRSGG
Sbjct: 61  ---PHR-TEDNIRDEARRNRSNAV---NPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGG 111

BLAST of CcUC11G209900 vs. TAIR 10
Match: AT1G72810.1 (Pyridoxal-5'-phosphate-dependent enzyme family protein )

HSP 1 Score: 51.2 bits (121), Expect = 7.0e-07
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 0

Query: 24  VRRNSSSPFTVICSSSATSDSAASPVLDSSPPLGVHSHQFTCANNQEDSHRRSSVVVDVG 83
           ++ +S++ FTV C+S       ASP +   PP      + +   N  D  RR    +   
Sbjct: 21  LKPHSAASFTVRCTS-------ASPAV---PPQTPQKPRRSPDENIRDEARRRPHQL--- 80

Query: 84  HNFSAKYVPFGSGYDSSEWYSLDEIVYRSRSGGLL 119
            N SA+YVPF +   S+E YSLDEIVYRS+SG LL
Sbjct: 81  QNLSARYVPFNAPPSSTESYSLDEIVYRSQSGALL 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038891002.18.7e-4484.75threonine synthase, chloroplastic-like [Benincasa hispida][more]
XP_008459597.12.2e-4281.36PREDICTED: threonine synthase, chloroplastic-like [Cucumis melo] >KAA0061477.1 t... [more]
TYK10797.12.2e-4281.36threonine synthase [Cucumis melo var. makuwa][more]
XP_004141067.12.0e-4079.66threonine synthase, chloroplastic [Cucumis sativus] >KGN60519.1 hypothetical pro... [more]
XP_022946725.11.1e-3876.27threonine synthase, chloroplastic-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q9MT282.9e-1063.46Threonine synthase, chloroplastic OS=Solanum tuberosum OX=4113 PE=2 SV=1[more]
Q9S7B54.0e-0740.98Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS1 PE=1 ... [more]
Q9SSP59.8e-0640.00Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS2 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A5D3CFM91.0e-4281.36Threonine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G0... [more]
A0A5A7V3M71.0e-4281.36Threonine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00... [more]
A0A1S3CB261.0e-4281.36Threonine synthase OS=Cucumis melo OX=3656 GN=LOC103498677 PE=3 SV=1[more]
A0A0A0LHR09.8e-4179.66Threonine synthase OS=Cucumis sativus OX=3659 GN=Csa_2G000280 PE=3 SV=1[more]
A0A6J1KA835.4e-3976.27Threonine synthase OS=Cucurbita maxima OX=3661 GN=LOC111493658 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G29840.12.8e-0840.98Pyridoxal-5'-phosphate-dependent enzyme family protein [more]
AT1G72810.17.0e-0740.00Pyridoxal-5'-phosphate-dependent enzyme family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036052Tryptophan synthase beta subunit-like PLP-dependent enzymeGENE3D3.40.50.1100coord: 63..126
e-value: 7.3E-7
score: 30.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC11G209900.1CcUC11G209900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0009088 threonine biosynthetic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0004795 threonine synthase activity