CcUC11G209060 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC11G209060
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionSm domain-containing protein
LocationCicolChr11: 1116797 .. 1121257 (+)
RNA-Seq ExpressionCcUC11G209060
SyntenyCcUC11G209060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAATCGAGGACTCATGAGTTAATGTATGACATTTTACCCAAACAAAAATGATTTTCCATAGAATAAATTTTTCAAAAAAATATATACAAATAAATAAAGAGAGCAAAGTAGTTTTGCCCTAACCTTCGTCTTCTTCTCTCTTTCACGATACTCCTTCGCTTTGAGTTTTTCCGACTACAAGTCGTACTCTCACTCTCCATTCTCATCTATCTTTGCAGCCAGCCGCTGACAGGATCTTCAGTTTTCTCGTCTTCATTTTACGGTATTATATCAAATATCGTTTCTTTAACATTCTCTTAGTTTCAATTTCTTTGTCGTATGGTTGATTCTTGAGAAAATTTCTGAATTGATATAATTTGTTTCAAATTTTCATTTTGTGAAATCTGACGCTGTTTTCTTGAAATCTGCTAATTTGTTTAAATTTCCAATTTTCGTTCATGTTTGTGTTTCATTTCGGTAGGCTCCTTGTTTATGTAAGAGAACCTTTTTTTTTTCTTGATTTTTTTGGATAGCTTTGTTCTGTTTGGAGTGTTTATATTCGACGGAGGTGAGCTTCATTGATTTTGGTGAATTTAAGTCTTTTGTCATTGAAGTTTCTACTAATTTCCTGACTATTCAAGATACTTGGAGAAATTTAATCTTTGAGGACTAGGGGTTTCGTGTTGGACTTGTATTTATTAAGTTAACTTTTTATATTAAACATTTGTTGTTGGATTGAAATGGTGGGGGTACGAAAACTAAATGTTTCTTAAATGGCAAAAGTTTTGGGCTTCAGTAGATAGTTGTATGAATGAGGTGCAGTAGTGCGTATATTAGTATAGGTCTAAAACGAGAAAGTAGACCAAAACTCAGTGTGCTTAAAACTAATGTGACTGTTGCACATATGTCGAAACGAGCAGTCTGGATTGGGTTCTTAGTGTTGTAGAAAACTGTAATAAATGAAACAAAGTGCACCCCTAATGGTTTAGATGTTCATAGATTTCACAATTTCCATGTGCACGTGCAGTTATTCAGTGGCATTTCTGCTTTCTGAACTCTAATATTTTCTATTTCAACAAATATCAAAACCGCCCCCCCCCCCCCCCAAAATCTTGTTACTATTACCCATCTGGATGTTCTTTTTATAACTCCATTTTGGGCTCTTGGGTTTTTACCCGCCCTTTCTTTTGTAATATTTCATACATGGATGACATATTTGTCTTCTCCACATTGTTCTTAATACTTCTTATCATGTCTACTTCTACAGTTAGTATATTGAAAAGGTGAGTTAAAAGAAAGTTCCAATTAATGAATATTAATGGATCTTTCAAAAGAGATTGAATTCTCATTAACTTAATTCTCATCAAAGAATATTAATTGAATAAATTGGAAGTTAATTAAGAAGACTGATTGGAATCCATTTGGATGACTCAGGGTAATCAGAAGTTTGATTTGGTGTACTGATGAAATTGATCTAAAAAAACAAACTAATTCCGAAATACAAAAATAAACAAAAGGAATTTCCTTCTGTTTGATTTAGTTGCAGACAATTTTTTTCTCACTCCCTTATTAAATATTGCATATATATTGAGAAAGGATTGAGATTCATAAACCATGGTGCTATGGTTATTTGTATTCATGTATGCTTCAGATTTAAGAAAGCCACCATATAATTGAATCTTTTTCACTTTCTAGCTTTTTCATGATTATTGTTTGTGATTCTCTTTTATTGTTTAGGTTTCGTTTAGTAACGATTTTATTTTTAGGTTGCTGTTTTTTAAATTTATGCTTGTTTTCTCCTAAATTACATATTGTGGTTTTCACATTTCTTGAAGAAACACTTGAACTATGAATCAAGTTCTAAAAACAAAAACAAGTTTTTGAAAACTAATTTTTTGTAGTTTTTAAAGGAAAGTAGATAAGAACAAAGAAATTTTTAGGTGGAAGTAATATAGATGAGCTTTTATTTTGAAAAACATAAAACCAAAAACCAAATGATTTTCAAATGGGGCCTTAGATGTTCATTGCCTCAATGGTTTCTCGTTTTCATTTGAGACCTGTAGAGTTTCCTGTCTTATCTCTTATTCCTTTAACTATGGGGGCATGTCATAGTTCGTTGAATACTTGGTGTCTGTTGAGTCATTAGTGATAATTGCTCATTAGTTCTTTTACATTGTTTGATGGTGTTGAATAAATTTGATTAATTATATCTGATCAGGTATAAAAAGTTGGTAGTGCAGATAGAAGGAAACTAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCTTCTACTTTTCTTTTGCCTTGGTCCTTGGATAATTCTCTACCTGTTCTATTTGGTATTTTATTCTTAGAATTGTATCATTACTTTTAAGAATCTGTAGAAGTTCAGGGAAAACAACACTTGCAAATGTTGAGGCACTATCCTTTTTTTGTTCACAAATCTTCCTTTATTGACAAATGGCGTCATTAATCAACCCTTTTTTCGTTACTTTTAACAATATTTAGACATTGAGGGAAAACAACACTTGCAAATGTTGAGGCACTATCCTTTTTTTGTTCATGAATCTTCCTTGTTAACAAATGGTGTCATTAGTCAACCCTTTTTATTTCCCTATAATCTCTTTATTATGACCTTTGGACATTGTATGTTCCATTCCATATGTTGTACAATTGTGTCCTTGAGTTCATATGATCTCTTTATCAATTCTTTGTTCTTCAAACTTGACTTGTTCGTAATTTTTTTTAACATAAACCGAGCTTTCATGGAGAAAAAATGAAAGGATACAAAAGAGGCACAACAAAGTACCCAAAAAGCTGAGCCAAAGATAAGACCTAATGGTGCCCATGAAACTTAGCGAGAGTTAGTAATGTAGGGAAGTTGTTATTGTGATTTGTTATGAATAGTTGGTTGGAAATGGTAAAGGTATGGATTGATTTAGTTGGCTCAACTCTCAAGTTTGAGTGGAGGGTTCCAGTTCCTCAAATTACTTGTATTCCACTCTTCCTTCATCTTTATCTTTCAATACTATTTTAGCTGTTATTTGGGTTCTATCACAATCACTGTTATGGCTATGCACACACCAAAAGTCTCCAGAATACGAAGGGGATTCTCACCACCAAGTAACCTAGAAATAGGTGTTTGAACCATCGCTGACAGCAATTAACTGGAGAAAAAGGGGGATCACCCAAAGAGATGGCTTTCCAAGGGTTCTTGAAAGTGCCTTTCAACCCTCTCCCCAAGGTTCATTTGAAGGGTGAGGGCCAAGGCGAAGTATTCAGCTCCAAAGGAAAACACCACAACCATTTAGCCAAAACGCCTCACTACAAATCCTCAAATTGCCAATACCCAACCCTAAACTCAATAGGTCTCATAACCCTCTCCCAGCTAACCAAATCTGAGCTGCCCCTCCCGTCAACACCCTACCATAGGAAATATGAACAATTTCTTTCACAAATGTTGTTTTGATTTTAAACATGACCATTTATTGTAATATAGGACCTTTATCTTTTCTTGTGCAGTATAACTGTTGAAAAACGGATAAAATCTATGTTGAATTCTAATGTGAAGATCCCATTTGTTTCATTGTATAGGTATTCTTGCCTGTCTCGATGGATATATGAATATAGCAATGGAGCAGACCGAAGAATACGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTTATCCGCGGGAATAACGGTAGATATTGAAATAGCTTTGATAATCTCATCTTTTGTTGACTCTTGAGAATAATTTTAAGACTCGATTTGTTAATGCAGTTCTGTACATCAGTACTTCAAAGAGGACATTAGCAGAAGGGTCGTCTTAGCGCATCTAAGAATCATGACAAGAAATGTGCATCCTTTGCAGTACGTTATGTTTCTTCCTTCAGTCTTATGCTGTAAAATGAGAGATCAATCGGAATTGGAATTGATGATTGAAATTGTATTTGTACAATGAAGTAGAAAATCCACCCATAGCGCCATGATGTGCTGTTCGTGTGCTTGTGAACAACTTCAATCAGAGAACTTGTTTTGTTAGAAATGGAATTATGATGAATCTTTGGATTTTTCTTTTATTGAAATTACTGATCTAATCTAATCTGCTCTCACATTTTTTACATTATTTGGTCGTCTGAGACTAACAAGTTTTTTTAGCTACTTATGGAGGTCGTGTATTGCCCTCAATCGTGCATTTGCTAAAGTTCCATTGCTTTCTTCTGTTCGAGCTAGAGTTATAATATTAGCTTGCGGCCATTTAAATAATTAGAGTGGATAAAATGAGTCACTGAATTAACAACAAATTTGATGTTTCCCAAGAAGACGAGGTACAAGGTGAATTTATGGGAGTGATTTGGAAATTGTTAAAATT

mRNA sequence

ATGAGAGAATCGAGGACTCATGAGTTAATCCAGCCGCTGACAGGATCTTCAGTTTTCTCGTCTTCATTTTACGATAGAAGGAAACTAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCTTCTACTTTTCTTTTGCCTTGGTCCTTGGATAATTCTCTACCTGTTCTATTTGGTATTTTATTCTTAGAATTGTATCATTACTTTTAAGAATCTGTAGAAGTTCAGGGAAAACAACACTTGCAAATGTTGAGGCACTATCCTTTTTTTGTTCACAAATCTTCCTTTATTGACAAATGGCGTCATTAATCAACCCTTTTTTCGTTACTTTTAACAATATTTAGACATTGAGGGAAAACAACACTTGCAAATGTTGAGGCACTATCCTTTTTTTGTTCATGAATCTTCCTTGTTAACAAATGGTGTCATTAGTCAACCCTTTTTATTTCCCTATAATCTCTTTATTATGACCTTTGGACATTGTATGTTCCATTCCATATGTTGTACAATTGTGTCCTTGAGTTCATATGATCTCTTTATCAATTCTTTGTTCTTCAAACTTGACTTGTTCGTAATTTTTTTTAACATAAACCGAGCTTTCATGGAGAAAAAATGAAAGGATACAAAAGAGGCACAACAAAGTACCCAAAAAGCTGAGCCAAAGATAAGACCTAATGGTGCCCATGAAACTTAGCGAGAGTTAGTAATGTAGGGAAGTTGTTATTGTGATTTGTTATGAATAGTTGGTTGGAAATGGTAAAGGTATGGATTGATTTAGTTGGCTCAACTCTCAAGTTTGAGTGGAGGGTTCCAGTTCCTCAAATTACTTGTATTCCACTCTTCCTTCATCTTTATCTTTCAATACTATTTTAGCTGTTATTTGGGTTCTATCACAATCACTGTTATGGCTATGCACACACCAAAAGTCTCCAGAATACGAAGGGGATTCTCACCACCAAGTAACCTAGAAATAGGTGTTTGAACCATCGCTGACAGCAATTAACTGGAGAAAAAGGGGGATCACCCAAAGAGATGGCTTTCCAAGGGTTCTTGAAAGTGCCTTTCAACCCTCTCCCCAAGGTTCATTTGAAGGGTGAGGGCCAAGGCGAAGTATTCAGCTCCAAAGGAAAACACCACAACCATTTAGCCAAAACGCCTCACTACAAATCCTCAAATTGCCAATACCCAACCCTAAACTCAATAGGTCTCATAACCCTCTCCCAGCTAACCAAATCTGAGCTGCCCCTCCCGTCAACACCCTACCATAGGAAATATGAACAATTTCTTTCACAAATGTTGTTTTGATTTTAAACATGACCATTTATTGTAATATAGGACCTTTATCTTTTCTTGTGCAGTATAACTGTTGAAAAACGGATAAAATCTATGTTGAATTCTAATGTGAAGATCCCATTTGTTTCATTGTATAGGTATTCTTGCCTGTCTCGATGGATATATGAATATAGCAATGGAGCAGACCGAAGAATACGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTTATCCGCGGGAATAACGTTCTGTACATCAGTACTTCAAAGAGGACATTAGCAGAAGGGTCGTCTTAGCGCATCTAAGAATCATGACAAGAAATGTGCATCCTTTGCAGTACGTTATGTTTCTTCCTTCAGTCTTATGCTGTAAAATGAGAGATCAATCGGAATTGGAATTGATGATTGAAATTGTATTTGTACAATGAAGTAGAAAATCCACCCATAGCGCCATGATGTGCTGTTCGTGTGCTTGTGAACAACTTCAATCAGAGAACTTGTTTTGTTAGAAATGGAATTATGATGAATCTTTGGATTTTTCTTTTATTGAAATTACTGATCTAATCTAATCTGCTCTCACATTTTTTACATTATTTGGTCGTCTGAGACTAACAAGTTTTTTTAGCTACTTATGGAGGTCGTGTATTGCCCTCAATCGTGCATTTGCTAAAGTTCCATTGCTTTCTTCTGTTCGAGCTAGAGTTATAATATTAGCTTGCGGCCATTTAAATAATTAGAGTGGATAAAATGAGTCACTGAATTAACAACAAATTTGATGTTTCCCAAGAAGACGAGGTACAAGGTGAATTTATGGGAGTGATTTGGAAATTGTTAAAATT

Coding sequence (CDS)

ATGAGAGAATCGAGGACTCATGAGTTAATCCAGCCGCTGACAGGATCTTCAGTTTTCTCGTCTTCATTTTACGATAGAAGGAAACTAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCTTCTACTTTTCTTTTGCCTTGGTCCTTGGATAATTCTCTACCTGTTCTATTTGGTATTTTATTCTTAGAATTGTATCATTACTTTTAA

Protein sequence

MRESRTHELIQPLTGSSVFSSSFYDRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFASTFLLPWSLDNSLPVLFGILFLELYHYF
Homology
[Close]
BLAST of CcUC11G209060 vs. NCBI nr
Match: KAG6600796.1 (Eukaryotic translation initiation factor 2 subunit 3, Y-linked, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 52/62 (83.87%), Postives = 52/62 (83.87%), Query Frame = 0 

Query: 14  TGSSVFSSSF---YDRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI 73
           T SSV SS F    DRRK EMSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGI
Sbjct: 511 TTSSVLSSPFRGCADRRKPEMSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGI 570

[Close]
BLAST of CcUC11G209060 vs. NCBI nr
Match: KAG6599859.1 (Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 8.8e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 25  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Sbjct: 87  DRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILA 134

[Close]
BLAST of CcUC11G209060 vs. NCBI nr
Match: XP_023539899.1 (uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.5 bits (223), Expect = 8.8e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 25  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Sbjct: 87  DRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILA 134

[Close]
BLAST of CcUC11G209060 vs. NCBI nr
Match: XP_022988243.1 (uncharacterized protein LOC111485552 [Cucurbita maxima])

HSP 1 Score: 90.5 bits (223), Expect = 8.8e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 25  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Sbjct: 87  DRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILA 134

[Close]
BLAST of CcUC11G209060 vs. NCBI nr
Match: TKS07621.1 (hypothetical protein D5086_0000110870 [Populus alba])

HSP 1 Score: 84.0 bits (206), Expect = 8.3e-13
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 27  RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           RK +MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Sbjct: 67  RKKKMSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILA 112

[Close]
BLAST of CcUC11G209060 vs. ExPASy Swiss-Prot
Match: O22823 (Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI 71
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGI
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGI 40

[Close]
BLAST of CcUC11G209060 vs. ExPASy Swiss-Prot
Match: Q9M1Z3 (Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-10
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 36 EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRG 70
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRG 39

[Close]
BLAST of CcUC11G209060 vs. ExPASy Swiss-Prot
Match: P62312 (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 39 SASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+ A
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLA 35

[Close]
BLAST of CcUC11G209060 vs. ExPASy Swiss-Prot
Match: P62313 (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 39 SASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+ A
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLA 35

[Close]
BLAST of CcUC11G209060 vs. ExPASy Swiss-Prot
Match: Q4PG71 (U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=LSM6 PE=3 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 7.3e-04
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          MS   ++ +A   +P DFLK + G+ V V+LNSG+DYRG+ +
Sbjct: 1  MSAAAQQPNAKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLS 42

[Close]
BLAST of CcUC11G209060 vs. ExPASy TrEMBL
Match: A0A6J1JLP5 (uncharacterized protein LOC111485552 OS=Cucurbita maxima OX=3661 GN=LOC111485552 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.3e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 25  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Sbjct: 87  DRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILA 134

[Close]
BLAST of CcUC11G209060 vs. ExPASy TrEMBL
Match: A0A6M2EGR7 (Sm domain-containing protein OS=Populus davidiana OX=266767 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-13
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 27 RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          RK +MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Sbjct: 13 RKKKMSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILA 58

[Close]
BLAST of CcUC11G209060 vs. ExPASy TrEMBL
Match: A0A4U5QCB4 (Sm domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000110870 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-13
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 27  RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
           RK +MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Sbjct: 67  RKKKMSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILA 112

[Close]
BLAST of CcUC11G209060 vs. ExPASy TrEMBL
Match: A0A0A0KSS9 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.2e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILA 42

[Close]
BLAST of CcUC11G209060 vs. ExPASy TrEMBL
Match: A0A6J1DNH0 (sm-like protein LSM36B OS=Momordica charantia OX=3673 GN=LOC111022247 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.2e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA 73
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILA 42

[Close]
BLAST of CcUC11G209060 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-12
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI 71
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGI
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGI 40

[Close]
BLAST of CcUC11G209060 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-12
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 31 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI 71
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGI
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGI 40

[Close]
BLAST of CcUC11G209060 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-11
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 36 EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRG 70
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRG 39

The following BLAST results are available for this feature:
BLAST of CcUC11G209060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600796.12.7e-1683.87Eukaryotic translation initiation factor 2 subunit 3, Y-linked, partial [Cucurbi... [more]
KAG6599859.18.8e-1593.75Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023539899.18.8e-1593.75uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo][more]
XP_022988243.18.8e-1593.75uncharacterized protein LOC111485552 [Cucurbita maxima][more]
TKS07621.18.3e-1389.13hypothetical protein D5086_0000110870 [Populus alba][more]
BLAST of CcUC11G209060 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O228232.8e-1185.00Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1[more]
Q9M1Z35.2e-1091.18Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1[more]
P623129.2e-0773.53U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV... [more]
P623139.2e-0773.53U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 S... [more]
Q4PG717.3e-0445.24U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis (strain 521 / FGSC 9... [more]
BLAST of CcUC11G209060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JLP54.3e-1593.75uncharacterized protein LOC111485552 OS=Cucurbita maxima OX=3661 GN=LOC111485552... [more]
A0A6M2EGR74.0e-1389.13Sm domain-containing protein OS=Populus davidiana OX=266767 PE=3 SV=1[more]
A0A4U5QCB44.0e-1389.13Sm domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000110870 PE=4 S... [more]
A0A0A0KSS95.2e-1397.62Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=... [more]
A0A6J1DNH05.2e-1397.62sm-like protein LSM36B OS=Momordica charantia OX=3673 GN=LOC111022247 PE=3 SV=1[more]
BLAST of CcUC11G209060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43810.12.0e-1285.00Small nuclear ribonucleoprotein family protein [more]
AT2G43810.22.0e-1285.00Small nuclear ribonucleoprotein family protein [more]
AT3G59810.13.7e-1191.18Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 35..74
e-value: 1.4E-6
score: 29.8
NoneNo IPR availablePANTHERPTHR11021:SF8SM-LIKE PROTEIN LSM36B-RELATEDcoord: 31..72
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 31..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC11G209060.1CcUC11G209060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030490 maturation of SSU-rRNA
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0000932 P-body
cellular_component GO:0005732 sno(s)RNA-containing ribonucleoprotein complex
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003723 RNA binding