CcUC11G209020 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G209020
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	UvrD-like helicase ATP-binding domain-containing protein
Location	CicolChr11: 1105753 .. 1106025 (+)
RNA-Seq Expression	CcUC11G209020
Synteny	CcUC11G209020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCCATTTCCAAAGCTCCGTTCATTCAAGTAATCTCCTTGGAAGAGGTAAACCCAAGTGAGTTAGGATTATACAACATCCAAATCAAGAAATGGAAAAATGGTCCCAAGGAATCCTCAACTCCAGGAGACATATTCATCTTGTCGAACATCAAACCAAATGTCGTTTCCGATTTGCAAAGAATCGGAAAAACATGGACTTTCACGTCCTTTTTCCCAAACAAAGACGACGACAACAACAACGAAATGTTCATGTCTTCTTTTACCTAA

mRNA sequence

ATGGATCCCATTTCCAAAGCTCCGTTCATTCAAGTAATCTCCTTGGAAGAGGTAAACCCAAGTGAGTTAGGATTATACAACATCCAAATCAAGAAATGGAAAAATGGTCCCAAGGAATCCTCAACTCCAGGAGACATATTCATCTTGTCGAACATCAAACCAAATGTCGTTTCCGATTTGCAAAGAATCGGAAAAACATGGACTTTCACGTCCTTTTTCCCAAACAAAGACGACGACAACAACAACGAAATGTTCATGTCTTCTTTTACCTAA

Coding sequence (CDS)

ATGGATCCCATTTCCAAAGCTCCGTTCATTCAAGTAATCTCCTTGGAAGAGGTAAACCCAAGTGAGTTAGGATTATACAACATCCAAATCAAGAAATGGAAAAATGGTCCCAAGGAATCCTCAACTCCAGGAGACATATTCATCTTGTCGAACATCAAACCAAATGTCGTTTCCGATTTGCAAAGAATCGGAAAAACATGGACTTTCACGTCCTTTTTCCCAAACAAAGACGACGACAACAACAACGAAATGTTCATGTCTTCTTTTACCTAA

Protein sequence

MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKNGPKESSTPGDIFILSNIKPNVVSDLQRIGKTWTFTSFFPNKDDDNNNEMFMSSFT

Homology

[Close]

BLAST of CcUC11G209020 vs. NCBI nr
Match: TXG56686.1 (hypothetical protein EZV62_017999 [Acer yangbiense])

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-13
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1   MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKN-----GPKESST-PGDIFILSNIKP 60
           MD IS+APF QV+ LEE  P  +GLY++++  W+N     G +   T PGDI IL++ KP
Sbjct: 75  MDTISRAPFAQVVDLEESKPYGIGLYDVKVDNWRNRFSNRGKEPYKTLPGDILILADTKP 134

Query: 61  NVVSDLQRIGKTWTFTSFFPNKDDDNNNEMFMSS 89
              SDLQR+G TWTF S     +D+N N++  +S
Sbjct: 135 ETDSDLQRLGNTWTFLSVTKITEDENENDIGSTS 168

[Close]

BLAST of CcUC11G209020 vs. NCBI nr
Match: PSS26838.1 (TPR and ankyrin repeat-containing protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-13
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1   MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKN-----GPKESST-PGDIFILSNIKP 60
           MD I  APF +VISL+E  P E  LY++++  WKN     G +   T PGDIFI+S+ KP
Sbjct: 69  MDVIHGAPFAEVISLDESKPHETSLYDVKVDYWKNKFSDRGKEPYKTLPGDIFIISDAKP 128

Query: 61  NVVSDLQRIGKTWTFTSFFPNKDDDNNNEMFMSSF 90
             VSDLQR+G+TWT+ S     +D+N  +  ++ F
Sbjct: 129 ETVSDLQRVGRTWTWASVTKISEDENEGDNSLTHF 163

[Close]

BLAST of CcUC11G209020 vs. NCBI nr
Match: XP_031745084.1 (uncharacterized protein LOC101214715 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKNGPKESSTPGDIFILSNIKPNVVSDL 60
           M+PISK+P +QVISL+E+ P   GL+ I +K  K        PG+IFILSN+KP VVSDL
Sbjct: 88  MNPISKSPCVQVISLKEIKPYGKGLFQIHLKDCKQYCPTILIPGNIFILSNVKPKVVSDL 147

Query: 61  QRIGKTWTFTSFF 74
           Q  GKTWTF + F
Sbjct: 148 QGNGKTWTFATTF 160

[Close]

BLAST of CcUC11G209020 vs. NCBI nr
Match: KGN44700.2 (hypothetical protein Csa_016709 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKNGPKESSTPGDIFILSNIKPNVVSDL 60
           M+PISK+P +QVISL+E+ P   GL+ I +K  K        PG+IFILSN+KP VVSDL
Sbjct: 74  MNPISKSPCVQVISLKEIKPYGKGLFQIHLKDCKQYCPTILIPGNIFILSNVKPKVVSDL 133

Query: 61  QRIGKTWTFTSFF 74
           Q  GKTWTF + F
Sbjct: 134 QGNGKTWTFATTF 146

[Close]

BLAST of CcUC11G209020 vs. NCBI nr
Match: XP_008461528.2 (PREDICTED: uncharacterized protein LOC103500100 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-12
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1   MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKNGPKESSTPGDIFILSNIKPNVVSDL 60
           M+PISK+P +QVI+L+E+     GL+ I +K  K        PG+IFILSN+KP VVSDL
Sbjct: 56  MNPISKSPCVQVIALKEIKTYGKGLFEIHLKDCKQYCPTILIPGNIFILSNVKPKVVSDL 115

Query: 61  QRIGKTWTFTSFFPNK 77
           QR G+TWTF +F   K
Sbjct: 116 QRNGRTWTFATFVSKK 131

[Close]

BLAST of CcUC11G209020 vs. ExPASy TrEMBL
Match: A0A5C7HKB8 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017999 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1   MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKN-----GPKESST-PGDIFILSNIKP 60
           MD IS+APF QV+ LEE  P  +GLY++++  W+N     G +   T PGDI IL++ KP
Sbjct: 75  MDTISRAPFAQVVDLEESKPYGIGLYDVKVDNWRNRFSNRGKEPYKTLPGDILILADTKP 134

Query: 61  NVVSDLQRIGKTWTFTSFFPNKDDDNNNEMFMSS 89
              SDLQR+G TWTF S     +D+N N++  +S
Sbjct: 135 ETDSDLQRLGNTWTFLSVTKITEDENENDIGSTS 168

[Close]

BLAST of CcUC11G209020 vs. ExPASy TrEMBL
Match: A0A2R6RE55 (TPR and ankyrin repeat-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc08133 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.1e-13
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1   MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKN-----GPKESST-PGDIFILSNIKP 60
           MD I  APF +VISL+E  P E  LY++++  WKN     G +   T PGDIFI+S+ KP
Sbjct: 69  MDVIHGAPFAEVISLDESKPHETSLYDVKVDYWKNKFSDRGKEPYKTLPGDIFIISDAKP 128

Query: 61  NVVSDLQRIGKTWTFTSFFPNKDDDNNNEMFMSSF 90
             VSDLQR+G+TWT+ S     +D+N  +  ++ F
Sbjct: 129 ETVSDLQRVGRTWTWASVTKISEDENEGDNSLTHF 163

[Close]

BLAST of CcUC11G209020 vs. ExPASy TrEMBL
Match: A0A0A0K415 (AAA_11 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G291110 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKNGPKESSTPGDIFILSNIKPNVVSDL 60
           M+PISK+P +QVISL+E+ P   GL+ I +K  K        PG+IFILSN+KP VVSDL
Sbjct: 91  MNPISKSPCVQVISLKEIKPYGKGLFQIHLKDCKQYCPTILIPGNIFILSNVKPKVVSDL 150

Query: 61  QRIGKTWTFTSFF 74
           Q  GKTWTF + F
Sbjct: 151 QGNGKTWTFATTF 163

[Close]

BLAST of CcUC11G209020 vs. ExPASy TrEMBL
Match: A0A1S3CEY4 (uncharacterized protein LOC103500100 OS=Cucumis melo OX=3656 GN=LOC103500100 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-12
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1   MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKNGPKESSTPGDIFILSNIKPNVVSDL 60
           M+PISK+P +QVI+L+E+     GL+ I +K  K        PG+IFILSN+KP VVSDL
Sbjct: 56  MNPISKSPCVQVIALKEIKTYGKGLFEIHLKDCKQYCPTILIPGNIFILSNVKPKVVSDL 115

Query: 61  QRIGKTWTFTSFFPNK 77
           QR G+TWTF +F   K
Sbjct: 116 QRNGRTWTFATFVSKK 131

[Close]

BLAST of CcUC11G209020 vs. ExPASy TrEMBL
Match: A0A7J0EX77 (P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_07g0011890 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-12
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 1   MDPISKAPFIQVISLEEVNPSELGLYNIQIKKWKN-----GPKESST-PGDIFILSNIKP 60
           MD I  APF +VISL+E  P E  LY++++  WKN     G +   T PGDIFI+S+ KP
Sbjct: 37  MDVIHGAPFAEVISLDESKPHETSLYDVKVDYWKNKFSDRGKEPYKTLPGDIFIISDAKP 96

Query: 61  NVVSDLQRIGKTWTFTSFFPNKDDDNNNEMFMSSF 90
              SDLQR+G+ WT+ S     +D+N  +  ++ F
Sbjct: 97  ETASDLQRVGRPWTWASVTKISEDENEGDNSLTHF 131

The following BLAST results are available for this feature:

BLAST of CcUC11G209020 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG56686.1	3.3e-13	45.74	hypothetical protein EZV62_017999 [Acer yangbiense]	[more]
PSS26838.1	4.4e-13	45.26	TPR and ankyrin repeat-containing protein [Actinidia chinensis var. chinensis]	[more]
XP_031745084.1	1.3e-12	56.16	uncharacterized protein LOC101214715 [Cucumis sativus]	[more]
KGN44700.2	1.3e-12	56.16	hypothetical protein Csa_016709 [Cucumis sativus]	[more]
XP_008461528.2	2.2e-12	52.63	PREDICTED: uncharacterized protein LOC103500100 [Cucumis melo]	[more]

BLAST of CcUC11G209020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC11G209020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7HKB8	1.6e-13	45.74	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017999 PE=4 SV=1	[more]
A0A2R6RE55	2.1e-13	45.26	TPR and ankyrin repeat-containing protein OS=Actinidia chinensis var. chinensis ...	[more]
A0A0A0K415	6.1e-13	56.16	AAA_11 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G291110 PE=4...	[more]
A0A1S3CEY4	1.0e-12	52.63	uncharacterized protein LOC103500100 OS=Cucumis melo OX=3656 GN=LOC103500100 PE=...	[more]
A0A7J0EX77	3.0e-12	43.16	P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Acti...	[more]

BLAST of CcUC11G209020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G209020.1	CcUC11G209020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007015	actin filament organization
biological_process	GO:0009860	pollen tube growth
biological_process	GO:0030050	vesicle transport along actin filament
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0031982	vesicle
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0000146	microfilament motor activity