CcUC11G208320 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC11G208320
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	WD repeat-containing protein RUP2-like
Location	CicolChr11: 213068 .. 213576 (+)
RNA-Seq Expression	CcUC11G208320
Synteny	CcUC11G208320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACCGTCTGATTCGGTCAAGGAGGAACATGGCAATTAACATGAAGGCTGTTTTTACTATTCTGAGGACAATTGTGACGAGTAAGGTACCAATTTTCTAATGCGATGATCACGGCGGGCGGCGCATGTGGAGTGTGATTACTCGATGATGGATGTTGTAGTCGGTGCATTAGGGTCAAAAGACGACACGGTGCAAGTATGGGACGCACGCTGCGACGGTGGGGACTGCGTGGCTGTGGTGCAGCCAAGTGGTACTGAGTCAGCTTTGTAGTGTAGAATTCAACCCGTACGACGGCAAGTTGGTGGCAGTTGGATGCGCGAATCAGAAAGCATACAGGGACGACCAGTACAAAATGGGGGAACCAATTGTTGTATCCGAAGGGCACGAGAAAACAGTGATGTATGTGAAATTCATGGACAGAAGGACAATGGTGTCAACGAGGACAAAGGGAGGGACGATCGTGTCGACTCGTAGGAAAAGGAAAATGGTGGAAAAACATTGTTGA

mRNA sequence

ATGGGCACCGGTCAAAAGACGACACGGTGCAAGTATGGGACGCACGCTGCGACGGTGGGGACTGCGTGGCTGTGGTGCAGCCAAGTGGTACTGAGTCAGCTTTGTAGTGTAGAATTCAACCCGTACGACGGCAAGTTGGTGGCAGTTGGATGCGCGAATCAGAAAGCATACAGGGACGACCAGTACAAAATGGGGGAACCAATTGTTGTATCCGAAGGGCACGAGAAAACAGTGATGTATGTGAAATTCATGGACAGAAGGACAATGGTGTCAACGAGGACAAAGGGAGGGACGATCGTGTCGACTCGTAGGAAAAGGAAAATGGTGGAAAAACATTGTTGA

Coding sequence (CDS)

ATGGGCACCGGTCAAAAGACGACACGGTGCAAGTATGGGACGCACGCTGCGACGGTGGGGACTGCGTGGCTGTGGTGCAGCCAAGTGGTACTGAGTCAGCTTTGTAGTGTAGAATTCAACCCGTACGACGGCAAGTTGGTGGCAGTTGGATGCGCGAATCAGAAAGCATACAGGGACGACCAGTACAAAATGGGGGAACCAATTGTTGTATCCGAAGGGCACGAGAAAACAGTGATGTATGTGAAATTCATGGACAGAAGGACAATGGTGTCAACGAGGACAAAGGGAGGGACGATCGTGTCGACTCGTAGGAAAAGGAAAATGGTGGAAAAACATTGTTGA

Protein sequence

MGTGQKTTRCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHEKTVMYVKFMDRRTMVSTRTKGGTIVSTRRKRKMVEKHC

Homology

[Close]

BLAST of CcUC11G208320 vs. NCBI nr
Match: KAA0038490.1 (WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 5.9e-15
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 8   TRCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEP 67
           TRC+ G   A V  +      VV S +C VEFNPY G LVAVGCA++KAY  D+ KM EP
Sbjct: 182 TRCESGECVAVVQPS------VVRSPVCCVEFNPYGGGLVAVGCADRKAYGYDRRKMREP 241

Query: 68  IVVSEGHEKTVMYVKFMDRRTMVSTRTKG 97
           +VV EGH KTV YVKF+D  T+VS  T G
Sbjct: 242 VVVFEGHGKTVTYVKFVDGGTVVSASTDG 264

[Close]

BLAST of CcUC11G208320 vs. NCBI nr
Match: XP_038887335.1 (WD repeat-containing protein RUP2-like [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 50/89 (56.18%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 8   TRCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEP 67
           TRC  G   A V  +      VV S +C VEFNPY G LVAVGCA++KAY  D+ KM EP
Sbjct: 186 TRCDGGECVAVVQPS------VVRSPVCCVEFNPYGGALVAVGCADRKAYGYDRRKMREP 245

Query: 68  IVVSEGHEKTVMYVKFMDRRTMVSTRTKG 97
           +VV EGH KTV YVKF+D  T+VS  T G
Sbjct: 246 VVVFEGHGKTVTYVKFVDGGTVVSASTDG 268

[Close]

BLAST of CcUC11G208320 vs. NCBI nr
Match: XP_004148378.3 (LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 8   TRCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEP 67
           TRC+ G   A V  +      VV S +C VEFNP+ G LVAVGCA++KAY  D+ KM EP
Sbjct: 184 TRCESGECVAVVQPS------VVRSAVCCVEFNPFGGGLVAVGCADRKAYGYDRRKMREP 243

Query: 68  IVVSEGHEKTVMYVKFMDRRTMVSTRTKG 97
           +VV EGH KTV YVKF+D  T+VS  T G
Sbjct: 244 VVVFEGHGKTVTYVKFVDGGTVVSASTDG 266

[Close]

BLAST of CcUC11G208320 vs. NCBI nr
Match: KAE8651477.1 (hypothetical protein Csa_002658 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 8   TRCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEP 67
           TRC+ G   A V  +      VV S +C VEFNP+ G LVAVGCA++KAY  D+ KM EP
Sbjct: 184 TRCESGECVAVVQPS------VVRSAVCCVEFNPFGGGLVAVGCADRKAYGYDRRKMREP 243

Query: 68  IVVSEGHEKTVMYVKFMDRRTMVSTRTKG 97
           +VV EGH KTV YVKF+D  T+VS  T G
Sbjct: 244 VVVFEGHGKTVTYVKFVDGGTVVSASTDG 266

[Close]

BLAST of CcUC11G208320 vs. NCBI nr
Match: KAF4353622.1 (hypothetical protein F8388_017945 [Cannabis sativa] >KAF4400179.1 hypothetical protein G4B88_019388 [Cannabis sativa])

HSP 1 Score: 87.4 bits (215), Expect = 8.4e-14
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 8   TRCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEP 67
           TRC+ G   ATV  +   C+      +C VEFNP+ G LVAVGCA+++AY  D  K+ +P
Sbjct: 194 TRCERGECVATVRPSGARCA------VCCVEFNPFGGPLVAVGCADRRAYGYDIRKLSDP 253

Query: 68  IVVSEGHEKTVMYVKFMDRRTMVSTRTKG 97
           ++V +GH+KTV YV+F+D RTMVS  T G
Sbjct: 254 VLVLDGHKKTVSYVRFLDSRTMVSAGTDG 276

[Close]

BLAST of CcUC11G208320 vs. ExPASy Swiss-Prot
Match: Q9LTJ6 (WD repeat-containing protein RUP1 OS=Arabidopsis thaliana OX=3702 GN=RUP1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-11
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 34  LCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHEKTVMYVKFMDRRTMVSTR 93
           +CSVEF+P+ G  +AVGCA++ AY  D  ++ +P++V +GH KTV Y +FMD  T+V+  
Sbjct: 215 ICSVEFDPFGGSSIAVGCADRNAYVYDIRRLVDPLIVLDGHTKTVTYARFMDSHTIVTGS 274

Query: 94  TKG 97
           T G
Sbjct: 275 TDG 277

[Close]

BLAST of CcUC11G208320 vs. ExPASy Swiss-Prot
Match: Q9FFA7 (WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-10
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 32  SQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHEKTVMYVKFMDRRTMVS 91
           S +C VEF+P  G  VAVGCA++K Y  D  K+ +P +  +GH KTV YV+F+D  T+V+
Sbjct: 195 SAVCCVEFDPSGGPAVAVGCADRKGYVYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVVT 254

Query: 92  TRTKG 97
             T G
Sbjct: 255 AGTDG 259

[Close]

BLAST of CcUC11G208320 vs. ExPASy Swiss-Prot
Match: Q9SYX2 (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana OX=3702 GN=SPA1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 18  TVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHEKT 77
           ++GT W        + +C V+F+ Y   L+A G A+ K Y  D   +  P     GHEK 
Sbjct: 843 SLGTIW------SPANVCCVQFSSYSNHLLAFGSADYKVYCYDLRYVKTPWCTLAGHEKA 902

Query: 78  VMYVKFMDRRTMVSTRT 95
           V YVKFMD  T+VS  T
Sbjct: 903 VSYVKFMDSETIVSAST 913

[Close]

BLAST of CcUC11G208320 vs. ExPASy Swiss-Prot
Match: Q9LJR3 (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.6e-05
Identity = 25/63 (39.68%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 32  SQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHEKTVMYVKFMDRRTMVS 91
           + +C V+F    G+ +A G A+ K Y  D      P+    GH KTV YVKF+D  T+VS
Sbjct: 669 ANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPKIPLCTMIGHSKTVSYVKFVDSSTLVS 728

Query: 92  TRT 95
           + T
Sbjct: 729 SST 731

[Close]

BLAST of CcUC11G208320 vs. ExPASy Swiss-Prot
Match: P93471 (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 25/79 (31.65%), Postives = 38/79 (48.10%), Query Frame = 0


Query: 24  LWCSQVVLS--------QLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHE 83
           +WC+    S         +C V++NP  G  +AVG A+   +  D   +  P+ V  GH+
Sbjct: 487 VWCTNQEASVLNIDMKANICCVKYNPGSGNYIAVGSADHHIHYYDLRNISRPVHVFTGHK 546

Query: 84  KTVMYVKFMDRRTMVSTRT 95
           K V YVKF+    + S  T
Sbjct: 547 KAVSYVKFLSNDELASAST 565

[Close]

BLAST of CcUC11G208320 vs. ExPASy TrEMBL
Match: A0A5A7T553 (WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G00140 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 8   TRCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEP 67
           TRC+ G   A V  +      VV S +C VEFNPY G LVAVGCA++KAY  D+ KM EP
Sbjct: 182 TRCESGECVAVVQPS------VVRSPVCCVEFNPYGGGLVAVGCADRKAYGYDRRKMREP 241

Query: 68  IVVSEGHEKTVMYVKFMDRRTMVSTRTKG 97
           +VV EGH KTV YVKF+D  T+VS  T G
Sbjct: 242 VVVFEGHGKTVTYVKFVDGGTVVSASTDG 264

[Close]

BLAST of CcUC11G208320 vs. ExPASy TrEMBL
Match: A0A0A0LHK2 (Ubiquitin ligase protein cop1 OS=Cucumis sativus OX=3659 GN=Csa_3G914590 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.2e-15
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 8   TRCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEP 67
           TRC+ G   A V  +      VV S +C VEFNP+ G LVAVGCA++KAY  D+ KM EP
Sbjct: 184 TRCESGECVAVVQPS------VVRSAVCCVEFNPFGGGLVAVGCADRKAYGYDRRKMREP 243

Query: 68  IVVSEGHEKTVMYVKFMDRRTMVSTRTKG 97
           +VV EGH KTV YVKF+D  T+VS  T G
Sbjct: 244 VVVFEGHGKTVTYVKFVDGGTVVSASTDG 266

[Close]

BLAST of CcUC11G208320 vs. ExPASy TrEMBL
Match: A0A7J6E5H2 (WD_REPEATS_REGION domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_017945 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.1e-14
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 8   TRCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEP 67
           TRC+ G   ATV  +   C+      +C VEFNP+ G LVAVGCA+++AY  D  K+ +P
Sbjct: 194 TRCERGECVATVRPSGARCA------VCCVEFNPFGGPLVAVGCADRRAYGYDIRKLSDP 253

Query: 68  IVVSEGHEKTVMYVKFMDRRTMVSTRTKG 97
           ++V +GH+KTV YV+F+D RTMVS  T G
Sbjct: 254 VLVLDGHKKTVSYVRFLDSRTMVSAGTDG 276

[Close]

BLAST of CcUC11G208320 vs. ExPASy TrEMBL
Match: W9S7H7 (E3 ubiquitin-protein ligase COP1 OS=Morus notabilis OX=981085 GN=L484_015775 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.0e-14
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 9   RCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPI 68
           RC  G   ATV       S    S +C VEFNP+ G LVAVGCA++KAY  D  K+ +P+
Sbjct: 204 RCDGGECVATVRP-----SATKTSSVCCVEFNPFGGPLVAVGCADRKAYGYDVRKLSDPV 263

Query: 69  VVSEGHEKTVMYVKFMDRRTMVSTRTKG 97
           ++ +GH+KTV YV+F+D RTMVS+ T G
Sbjct: 264 LILDGHQKTVTYVRFLDDRTMVSSGTDG 286

[Close]

BLAST of CcUC11G208320 vs. ExPASy TrEMBL
Match: A0A2P5CUG4 (Guanine nucleotide-binding protein, beta subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_121720 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 9   RCKYGTHAATVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPI 68
           RC+ G   A V  +   CS      +C +EFNP+ G LVAVGCA+++AY  D  K+ +P+
Sbjct: 240 RCEGGECVAAVRPSLARCS------VCCIEFNPFGGPLVAVGCADRRAYGYDIRKLSDPV 299

Query: 69  VVSEGHEKTVMYVKFMDRRTMVSTRTKG 97
           +V +GH+KTV YV+F+D RTMVS  T G
Sbjct: 300 LVLDGHQKTVSYVRFLDGRTMVSAGTDG 321

[Close]

BLAST of CcUC11G208320 vs. TAIR 10
Match: AT5G52250.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 34  LCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHEKTVMYVKFMDRRTMVSTR 93
           +CSVEF+P+ G  +AVGCA++ AY  D  ++ +P++V +GH KTV Y +FMD  T+V+  
Sbjct: 215 ICSVEFDPFGGSSIAVGCADRNAYVYDIRRLVDPLIVLDGHTKTVTYARFMDSHTIVTGS 274

Query: 94  TKG 97
           T G
Sbjct: 275 TDG 277

[Close]

BLAST of CcUC11G208320 vs. TAIR 10
Match: AT5G23730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-11
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 32  SQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHEKTVMYVKFMDRRTMVS 91
           S +C VEF+P  G  VAVGCA++K Y  D  K+ +P +  +GH KTV YV+F+D  T+V+
Sbjct: 195 SAVCCVEFDPSGGPAVAVGCADRKGYVYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVVT 254

Query: 92  TRTKG 97
             T G
Sbjct: 255 AGTDG 259

[Close]

BLAST of CcUC11G208320 vs. TAIR 10
Match: AT2G46340.1 (SPA (suppressor of phyA-105) protein family )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 18  TVGTAWLWCSQVVLSQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHEKT 77
           ++GT W        + +C V+F+ Y   L+A G A+ K Y  D   +  P     GHEK 
Sbjct: 843 SLGTIW------SPANVCCVQFSSYSNHLLAFGSADYKVYCYDLRYVKTPWCTLAGHEKA 902

Query: 78  VMYVKFMDRRTMVSTRT 95
           V YVKFMD  T+VS  T
Sbjct: 903 VSYVKFMDSETIVSAST 913

[Close]

BLAST of CcUC11G208320 vs. TAIR 10
Match: AT3G15354.1 (SPA1-related 3 )

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 25/63 (39.68%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 32  SQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHEKTVMYVKFMDRRTMVS 91
           + +C V+F    G+ +A G A+ K Y  D      P+    GH KTV YVKF+D  T+VS
Sbjct: 661 ANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPKIPLCTMIGHSKTVSYVKFVDSSTLVS 720

Query: 92  TRT 95
           + T
Sbjct: 721 SST 723

[Close]

BLAST of CcUC11G208320 vs. TAIR 10
Match: AT1G53090.1 (SPA1-related 4 )

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-06
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 32  SQLCSVEFNPYDGKLVAVGCANQKAYRDDQYKMGEPIVVSEGHEKTVMYVKFMDRRTMVS 91
           + +C V+F    G+ +A G A+ K Y  D      P+    GH KTV YV+F+D  T+VS
Sbjct: 619 ANICCVQFPSETGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVS 678

Query: 92  TRT 95
           + T
Sbjct: 679 SST 681

The following BLAST results are available for this feature:

BLAST of CcUC11G208320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038490.1	5.9e-15	56.18	WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]	[more]
XP_038887335.1	1.0e-14	56.18	WD repeat-containing protein RUP2-like [Benincasa hispida]	[more]
XP_004148378.3	1.7e-14	55.06	LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Cucumis sativus]	[more]
KAE8651477.1	1.7e-14	55.06	hypothetical protein Csa_002658 [Cucumis sativus]	[more]
KAF4353622.1	8.4e-14	49.44	hypothetical protein F8388_017945 [Cannabis sativa] >KAF4400179.1 hypothetical p...	[more]

BLAST of CcUC11G208320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTJ6	1.8e-11	47.62	WD repeat-containing protein RUP1 OS=Arabidopsis thaliana OX=3702 GN=RUP1 PE=1 S...	[more]
Q9FFA7	5.9e-10	47.69	WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 S...	[more]
Q9SYX2	1.8e-06	38.96	Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana OX=3702 GN=SPA1 PE=1 SV...	[more]
Q9LJR3	2.6e-05	39.68	Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1	[more]
P93471	3.3e-05	31.65	E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1	[more]

BLAST of CcUC11G208320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T553	2.8e-15	56.18	WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LHK2	8.2e-15	55.06	Ubiquitin ligase protein cop1 OS=Cucumis sativus OX=3659 GN=Csa_3G914590 PE=4 SV...	[more]
A0A7J6E5H2	4.1e-14	49.44	WD_REPEATS_REGION domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_...	[more]
W9S7H7	7.0e-14	50.00	E3 ubiquitin-protein ligase COP1 OS=Morus notabilis OX=981085 GN=L484_015775 PE=...	[more]
A0A2P5CUG4	3.5e-13	47.73	Guanine nucleotide-binding protein, beta subunit OS=Parasponia andersonii OX=347...	[more]

BLAST of CcUC11G208320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52250.1	1.3e-12	47.62	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G23730.1	4.2e-11	47.69	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G46340.1	1.3e-07	38.96	SPA (suppressor of phyA-105) protein family	[more]
AT3G15354.1	1.8e-06	39.68	SPA1-related 3	[more]
AT1G53090.1	3.1e-06	38.10	SPA1-related 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 14..104 e-value: 9.5E-10 score: 39.9
IPR044616	WD repeat-containing protein RUP1/2	PANTHER	PTHR45389	WD REPEAT-CONTAINING PROTEIN RUP1	coord: 31..97
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 35..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC11G208320.1	CcUC11G208320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding