CcUC10G206420 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G206420
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	H/ACA ribonucleoprotein complex subunit 4
Location	CicolChr10: 33443278 .. 33449535 (-)
RNA-Seq Expression	CcUC10G206420
Synteny	CcUC10G206420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATGTTGGAAGTTAAGATTTCTCATTCAAAGAATAAGAAGAAGAAGCACTGGAGCAAGGATGAGGAAGTGTCACCGGCTTTTGGTTCCGACAAGCAACCACAAAAGGATGTTGCTGATTTTATGATCAAGCCTCAAAGTTTTACTCCTCTGGTGGACACATCTCAATGCCCTATTCTTCCGAAGAACTACAACTATCTTAATATACATATTGGTCACCACACTCATTTTCCGTATGTTTCTCCCCTCTCAATTGGCCTCAGACTGAGTATATTAGGTATGGTATTCTCAATCTTGATAAAGCAGTGAATCCTTTGACGCATGAAGTTCTGGCTTTGATTAAGTGGGTTCTTCAGGTTGATAAAACGGGCCACAGTGGTACTCTCGACTCGAATGTAAGTGGTAATCCGATTGTGTGCATTGATCGAGTTACGTGACTCATGAAATTGCAACAAGGTGTGGGTAAGGAGTATATGTGTGTTGCTCGATTGCATTCTTGTGTGACCAATCTTTCTAATGTTTCTTGAGCTTTGGAGACGCTTATTGGGGTTGTGTTTCAGCAGTTACCGTTGATATCGACCATGAAGATATGGTTTAGGATTAAAATCGTTTACTATTTTCATATTTTATGATTGGTAGATGGATACTACTTGTGAATTATTTTTGTCTCTTGGTGATAGACGTAAATGTGCGTTATGTGTCATTTTTTATATAAATATTATTTTATGTTTTCGTTATAGCGAGAGGGAGAAAATTTGAACTTCTAGCATGAGAGAATGAGAGTATATACTTTTCATGGCAGTTAAGCTTTGCATTTTATGCTATTTTAATAGTAAATGTAATTTCAAATTTGTAGATATCTATCATGTTACTATATTTTAAACTCAACCCTACTTCAAATAGTTAAAATCATTATATTCTTGACCAACATGTACAAAATTGTTGGTCTTAAGAGTTAAAATGGAGCAAAGAATTAAAAAAAAAAAGGTAAAAATAGGCTAATAAAAAAATAAAGGAGCCAATAAAATTTTTGGCATTTGTTTTCAACAAAGACTCCATGGCCCAATGGATAAGGCGCTGGTCTACGGAACCAGAGATTCTGGGTTCGATCCCCAGTGGAGTCGTTTCATTTTTTTTTACTTTTGTTTTGTTTCTTTTTTGGATAAAGTGATATAGGGATCGAATGGGGCTTTCTTTGGGTTGGAACTGGAAGCCCTCTCAAAGCGAGTATGTTCATCCAATAGCGACTATCCACGTGTCCACCCAAGAAAGGTGTCAGCAAACAGAGCGGGAACGCTCCCACTTTCTGCCCATAATGCTTAAAATCTCGCGCGTTGCTGCCTTCTCTTGGTTCCTTCATCCTCTCGGTTTCCCGATCAACAATGGCTTCATCATCTTCTGGTACGTACCTTTTCCATTTTATTTTGTTCATGATCGTTATCTTTAGCAAATGCCATGTAATTGATCGGTAGTTACTGTCATCGAAATCAGTTCAATAATTTAGGTTACTTGATCTATATGATTACCGGGTTTCGGGAATTTGAACACCAAAAGGTATCTAAACTTCGTTACTGATAGAGTAGAAGAATAATTCCGCTTAAACTTTTTTTTTTTTTTATAACTAAAACTAACCAGCCGATGTTTTGAGCTATACTGATGCATGGTTACAAACTGAAATTCTCGATGTTATCTGCCTTAATCTGCAGTTGTAAATTCTTTGAGTGTACTGATTGGAGATGATTTCATTTTTGTTTGAAATGGATCAATTACAATTGTTTGATTGATTTCGAATCAACGCAGTCTTTCGTTCTTGAATTTTGATTTTCTGTGTACCGGAGAGATGGTTCTACCTGCCGAATGTGCAGCATTAAACTAATCGATGTACTTCTTTGAGATGATTCTATTTGGGAAATGAAACAGCTACAACAACTAGTGTGATAGAAGACCAGTTTAAAGAATTTTGTACAAGATGCAATATGGAAGAAGATGTAAGTTGGAAGTTTAAACTTGTATATAACAGAAATCAGTTGTAAAGGCTTTAACCAACTTCTCTGTTTCTTCCTGTTGCAAAACCGTTTTGACGAATTTGTTATTAGTTCGGGATTTTCAAGAATCTTATGGAATCCAAATTTCCATGACAAATATCAGTTCTGAATTGACTGGTGTTTTCCTCACTCTGCAGGAAAAATGTTATTCTATTTTACGCATCTTAGTAATTCCTTGCACTCTTCTCTTTTTGTAGAGTTAATAGCTTCCTGAACTGTTATTTCCAGCAATTCATTGAGGATATAACTGCCGGAGAATGTCAAGTATTCGAGAGATAGAATCGGTATCTTTGGCGCCAAACATTCTCGCTGGCAGGTAGATTGCCATTGCAGTTTCCACAATCTAGTAAGCAGGGACAGCCTCAGCATGCCTGATGATCAATACAACTGTTAACTGCTGTCTATAAATTATATTACTAGCCTCTTGCAATAACAGTGTTTCTGGCATACTTTCGCTAATGTTCTGATCTTCCCTTAGTTAATATGATTCGAAGAGGTGTATTTATCTATAACAGATCAACCAGTTTGGAAGTGCTGCTCAGTGGCCATGATTTGTGCTTGACACGTCAGGTACATTCTATTCTTTTTTCTTATTTCTAATGTCCGTGCATAGTATTAGAGATGTTTAAATGATTGTGGCTTGTTAGGCAGACTTGTATTATAGTTTAGACAGAACAGTTTAAAGACATGACCTTCATTCTCGGTTTGCAATTAGCGGCAGCTCTAGGAAGGACAATATAGGTGTATCTCGTCTTCATATGTTTTTCCTCTCTTTTATTTTGGATGAAAAGAACACGACAATGTTGTATAAAGTGTTAGAAATAAAATCAGCGGAATATATATATATATATATATATTTAAATAATCCAACATATATTCATTAGTAGTCAAAATAACAATAAAGAAAATCCAGTAACTTTTGGATTGAAGCATATTAATAAACCTTGTCCATAGGGCACAGAGAAGACGTACCTCCATTGTACAGTATTTGGCCCTCCACTTTGGAGATACAACAATTCTTCTAGAGACTTTGTGTGTAGCTAAGCTCTCTTACAAATTCTTGATTGCTTAGATGCTCAAAATAAAAAATAGTCAATAAAAAAATTTCAATAAAGAAAATTGTGGATGAAAAGGATTGTATACAATTGAAAAGAAAGATGTTTCTGAATACTAGCGATGGTCTTTTTATTAGGAAGAACTTCCTTTTATCAGGAACACTCGTTTAACAAGTCTGTAATCACTCTATCTTATTTAATAAGAAGAGTGGATTGATCAAGATCAAAGATTAAAACAAAAAGAATTAATAAATAAAAATAAAATAACATAAAGCATAGTTATCTCAGTTCAAAAAGTTTGAACAATATATATTATCTAATCCCGGTTCTGAATGTAGTCAAGTTAAGCAATTGGCATTCGCAAATTAAAAGAATAGACAAACCAACCTAAAACTTCTTACAACTTCTAAGCAACAAGAACAATAATAAAATTAAGACAAGGTAATTGAGGCTGACATCAAATTTATACTAATTCACCGGATGTGGACTACATTCAGATCTCCAACGTAGGTTCAACTAAAATGTTAGAGAGAAAAAATATAGTTTACAATCGTTCAGGAATGATTTCTGGAAAGGTCTCACAGGTCACTCAACAAAGCTTTCTCAAAACTCTTCCATGGAGGCTGAAAAGACCTTTTTTCCATTGCTCAAAACCCCCCACGATTCTTGCCAATTGAAGAAAAGTCGCTCTTTTTATAAATAGCGGCAGCGCTGGCGCTGCATAATGGAAATTTTCACCCGTGTCTTTTCGACTTTCCATGGTGCTCCTTGCTCGGTATTTCTGAATCTACAACACAATTTGTGTTAGTTTGGCTCCACTTACTGAACAGTCGAATAGTGTATAGTACTCTGCTTGACGGTAACTTGAATTTAAGACAAGTAAAATCAGCGATTAACTTGGCTTTCAATAATTGCAATTTGTTCTACCATGTGAATGTTCATGGGTTTTAGTTTTGAAATATACTATCGTACTGAACTGGAGCATTTGTTTCGCATTTGTTTCCAAGTCAATATACTATTTTGCAGGAGTATTTGTGTTCAAGTAAGTGCTTCCGTTCAAATAACGTGAGCCGCACCGCAACTACAAACCAGGAAGGTTTTGTTTTGTATTCTATTACTTTATTTTGAGTGGAAACTTTAATTTGTTGTTTTGACCTTCTTCAATAGGTTTGCTGATATTTGTTCCACTCATTCACTTGCTTAAAAGTTCATCGAACACTTTAGGACCCGAAAATCTGAAGACAATCATCGCAGTACTAGTAGTAGGGTTGTGAAGGATTGACAATCATCTTTTTTGAAATATTCTCTTTTAATAGGATAAAAATAGACAGTTTGAGCTAGATTGTTTATGGTAGATGGATATAATATTAACTTTGCATTCACCGATCAGCTTAAGTTTTTGAGTTAATTAGTGATTTAAGATAACATTAGAGCAAGTTGGTTAAGAGATTTTGTGTTCAAACTCCTATAATGTTATTTCTTCTCCAATTAATATTTAATTTTAATTTGTTGAGCCTCCATATTATATATCACGCCAACAAGTAGGAGGAATGGAATAGAGTGTGATAATATATTTTTTTATTATGCCGGATATGTATGTTGGACGCACTCCTTTAAGACTAACTAATCTGTAGGCAAAAGCGAATCCTGAAAGTGGTCTTCCATTAGCTAAAGACTAAGCCTTAATTGGTCTTCCCTAGCTCAAGACTAAGCCTAAAGTGGTCTTCAATTAGCTTGACGCTAGCTAGATACACTACTAAGCTTGGACGGGTCCTTCCACTAAGTGTTGCTTTGGCTATTTGTATGGAGCAGCCCCTGTCGGGTTTCATGGAATATTTTAACAAATAAAGGAAGTCTTCTCCCTTGAAATTCCAAAATATAAGTTAGGAAAATTGACCTCTTGTAAACTGAAAGAAACCATCCTGCAACTGAATGAAGAATAATATTGGCATATAACTTTGCCTTTACTCGCGTAGTCGCATGTCATTTTACTCGACAATTCCAACAGTATATTATTCTCTTTTAATATATTTCTCTCCGTAGACTATCCTTCTCATGCAGAGTTAACTTCTGAAAAACAAAAAATTGTTTCATCTCAATTTCTATCTCTTTGTTTGGTCTAAAGTTGATGCAATCCCTATATCAATTTACTCTATATATAGGCTTCTCAATTTTCTGCAGTTCCATCTTCAGGTTTCAACATTTTTATATATAAATAATAACAACAATGAAAGCTCCACCTATTTTCACAATAGTTTGATATTGTCTACTTTAGGCATAAACTCTCATAACTTTTGTTTTGGTATCACCCAAAAGGCCTATACCAATAGAGAGACAATTGTCTTCACTTATATACTCATTATTATTCCCGTCCCTAATCAACATGGGACTTTGTTTACATTCCTAACAATCCTCAACTCAAATAAAATGTCATTTGAGCCTCCCCTTGAACAAATTCATCAACTTGCAAGGAAGAGAGCTTGCTCTAAACCTAGAGTTACCTCTAGCTCATCTCGAGTCACTTGTTCTTCATCTCGAGATACATCTAGTTCATCCCAAGTCAACTTGCTCTTCTATCTTGACGCACATCCAGTTGATCTCAGGTCAACATTCAAATAGAGCAGCACATGAGCACTAGCACGGATCACACTTGCTCTCAGATAGAGAGCATGAATGAGGCTCAATTTCTTTGTTCGAAATTTGAGGATTTTACCTACATAGCTAGGTTTAGATCAAAGCTCTGATACTAATTGATAAGGACAACATAACCTCTACTGATCTCCACATTGAAGGTTATGTTGTCCACTTTGGGCATAACTCTCATGACTTTGCTTTTGGAACCACTCAAAAGACCTCATACCAATGAAGATAATTGTCTTCATTTATATACCAATGATCATTCCTTTCCTTCACCAATGGAGATAATTGTCTTCACTTACCTACATAAATAGCTTTTATTAGTCCTTTAAGCAATTGCTTTCGATCTAGTGTTTGATGGGTTTAAATTTGCAGTATAGGCTTCATCCATTTTTGTTGTTTGACCTTTTAGCCGATAGTTTTTGATCCTGTAGGTTGAGATTGGGAGCTCGATTGATGTTCATATCTGGTTCTAGTGTGTGCAATATTGCTCATCATCCTTTTCCTCGTGACAATATTACA

mRNA sequence

GCATGTTGGAAGTTAAGATTTCTCATTCAAAGAATAAGAAGAAGAAGCACTGGAGCAAGGATGAGGAAGTGTCACCGGCTTTTGGTTCCGACAAGCAACCACAAAAGGATGTTGCTGATTTTATGATCAAGCCTCAAAGTTTTACTCCTCTGGTGGACACATCTCAATGCCCTATTCTTCCGAAGAACTACAACTATCTTAATATACATATTGGTCACCACACTCATTTTCCGTATGTTTCTCCCCTCTCAATTGGCCTCAGACTGAGTATATTAGTGAATCCTTTGACGCATGAAGTTCTGGCTTTGATTAAGTGGGTTCTTCAGGTTGATAAAACGGGCCACAGTGGTACTCTCGACTCGAATAAGACCAGTTTAAAGAATTTTGTACAAGATGCAATATGGAAGAAGATAGTTAATAGCTTCCTGAACTGTTATTTCCAGCAATTCATTGAGGATATAACTGCCGGAGAATGTCAAGTAGATTGCCATTGCAGTTTCCACAATCTAGTAAGCAGGGACAGCCTCAGCATGCCTGATGATCAATACAACTTTAATATGATTCGAAGAGGTGTATTTATCTATAACAGATCAACCAGTTTGGAAGTGCTGCTCAGTGGCCATGATTTGTGCTTGACACGTCAGCGGCAGCGCTGGCGCTGCATAATGGAAATTTTCACCCGTGTCTTTTCGACTTTCCATGGTGCTCCTTGCTCGGAGTATTTGTGTTCAAGTAAGTGCTTCCGTTCAAATAACGTGAGCCGCACCGCAACTACAAACCAGGAAGGTTTGCTGATATTTGTTCCACTCATTCACTTGCTTAAAAGTTCATCGAACACTTTAGGACCCGAAAATCTGAAGACAATCATCGCAGTACTAGTAGTAGGCTCAAGACTAAGCCTAAAGTGGTCTTCAATTAGCTTGACGCTAGCTAGATACACTACTAAGCTTGGACGGGTCCTTCCACTAAGTGTTGCTTTGGCTATTTGTATGGAGCAGCCCCTGTTGAGATTGGGAGCTCGATTGATGTTCATATCTGGTTCTAGTGTGTGCAATATTGCTCATCATCCTTTTCCTCGTGACAATATTACA

Coding sequence (CDS)

ATGTTGGAAGTTAAGATTTCTCATTCAAAGAATAAGAAGAAGAAGCACTGGAGCAAGGATGAGGAAGTGTCACCGGCTTTTGGTTCCGACAAGCAACCACAAAAGGATGTTGCTGATTTTATGATCAAGCCTCAAAGTTTTACTCCTCTGGTGGACACATCTCAATGCCCTATTCTTCCGAAGAACTACAACTATCTTAATATACATATTGGTCACCACACTCATTTTCCGTATGTTTCTCCCCTCTCAATTGGCCTCAGACTGAGTATATTAGTGAATCCTTTGACGCATGAAGTTCTGGCTTTGATTAAGTGGGTTCTTCAGGTTGATAAAACGGGCCACAGTGGTACTCTCGACTCGAATAAGACCAGTTTAAAGAATTTTGTACAAGATGCAATATGGAAGAAGATAGTTAATAGCTTCCTGAACTGTTATTTCCAGCAATTCATTGAGGATATAACTGCCGGAGAATGTCAAGTAGATTGCCATTGCAGTTTCCACAATCTAGTAAGCAGGGACAGCCTCAGCATGCCTGATGATCAATACAACTTTAATATGATTCGAAGAGGTGTATTTATCTATAACAGATCAACCAGTTTGGAAGTGCTGCTCAGTGGCCATGATTTGTGCTTGACACGTCAGCGGCAGCGCTGGCGCTGCATAATGGAAATTTTCACCCGTGTCTTTTCGACTTTCCATGGTGCTCCTTGCTCGGAGTATTTGTGTTCAAGTAAGTGCTTCCGTTCAAATAACGTGAGCCGCACCGCAACTACAAACCAGGAAGGTTTGCTGATATTTGTTCCACTCATTCACTTGCTTAAAAGTTCATCGAACACTTTAGGACCCGAAAATCTGAAGACAATCATCGCAGTACTAGTAGTAGGCTCAAGACTAAGCCTAAAGTGGTCTTCAATTAGCTTGACGCTAGCTAGATACACTACTAAGCTTGGACGGGTCCTTCCACTAAGTGTTGCTTTGGCTATTTGTATGGAGCAGCCCCTGTTGAGATTGGGAGCTCGATTGATGTTCATATCTGGTTCTAGTGTGTGCAATATTGCTCATCATCCTTTTCCTCGTGACAATATTACA

Protein sequence

MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILPKNYNYLNIHIGHHTHFPYVSPLSIGLRLSILVNPLTHEVLALIKWVLQVDKTGHSGTLDSNKTSLKNFVQDAIWKKIVNSFLNCYFQQFIEDITAGECQVDCHCSFHNLVSRDSLSMPDDQYNFNMIRRGVFIYNRSTSLEVLLSGHDLCLTRQRQRWRCIMEIFTRVFSTFHGAPCSEYLCSSKCFRSNNVSRTATTNQEGLLIFVPLIHLLKSSSNTLGPENLKTIIAVLVVGSRLSLKWSSISLTLARYTTKLGRVLPLSVALAICMEQPLLRLGARLMFISGSSVCNIAHHPFPRDNIT

Homology

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BLAST of CcUC10G206420 vs. NCBI nr
Match: XP_022145634.1 (H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia])

HSP 1 Score: 146.0 bits (367), Expect = 6.4e-31
Identity = 82/133 (61.65%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M EV+IS S+ KKKKH SKDE+VSPA GSD+QPQKD ADFMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHT-----HFPYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T     + P   PL+  +R  IL      NP +HEV+A IK +L+VD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 133

[Close]

BLAST of CcUC10G206420 vs. NCBI nr
Match: XP_022983194.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 2.7e-29
Identity = 80/133 (60.15%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M  V+IS S+ KKKKH SKD+EVSPA GSD+QP KDVADFMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHTHF-----PYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T       P   PL+  +R  IL      NP +HEV+A IK +L+V+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 133

[Close]

BLAST of CcUC10G206420 vs. NCBI nr
Match: KAG6580549.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-29
Identity = 80/133 (60.15%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M  V+IS S+ KKKKH SKD+EVSPA GSD+QP KDVADFMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHTHF-----PYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T       P   PL+  +R  IL      NP +HEV+A IK +L+V+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 133

[Close]

BLAST of CcUC10G206420 vs. NCBI nr
Match: XP_023539854.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-29
Identity = 80/133 (60.15%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M +V+IS S+ KKKKH SKDEEVSP  GSD+QP KDVADF+IKPQSFTP VDTSQ PIL 
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHTHF-----PYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T       P   PL   +R  IL      NP +HEV+A IK +L+VD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 133

[Close]

BLAST of CcUC10G206420 vs. NCBI nr
Match: XP_022934839.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-29
Identity = 80/133 (60.15%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M  V+IS S+ KKKKH SKD+EVSPA GSD+QP KDVADFMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHTHF-----PYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T       P   PL+  +R  IL      NP +HEV+A IK +L+V+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 133

[Close]

BLAST of CcUC10G206420 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.3e-21
Identity = 62/133 (46.62%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M EV ISHSK KK+     D               D  D+MIKPQSFTP +DTSQ PIL 
Sbjct: 1   MAEVDISHSKKKKQDKTEND-------------AADTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHT-----HFPYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T     H P   PL   +R  ++      NP +HEV+A IK +L+V+
Sbjct: 61  KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 120

[Close]

BLAST of CcUC10G206420 vs. ExPASy Swiss-Prot
Match: O43101 (H/ACA ribonucleoprotein complex subunit CBF5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CBF5 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-12
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 39  DFMIKPQSFTPLVDTSQCPILPKNYNYLNIHIGHHTHFPYVS-PLSIGLR---------L 98
           D++IKP+S +P  DTSQ P+L KNY+ L +  GH+T  P  S PL+  ++         L
Sbjct: 6   DYIIKPESVSPSNDTSQWPLLLKNYDKLLVRSGHYTPIPAGSAPLNRDIKSYVSSGVINL 65

Query: 99  SILVNPLTHEVLALIKWVLQVDKTGHSGTLDSNKT 124
               NP +HEV+A IK +L+V+KTGHSGTLD   T
Sbjct: 66  DKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVT 100

[Close]

BLAST of CcUC10G206420 vs. ExPASy Swiss-Prot
Match: P40615 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-12
Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 14  KKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILPKNYNYLNIHIGHH 73
           KKH  K +E  P   +D    +   DF+IKP+S    +DTSQ P+L KN++ LN+   H+
Sbjct: 12  KKH-KKKKERKPLPEADVAEIQHAEDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHY 71

Query: 74  THFPYVS-PL--SIG-------LRLSILVNPLTHEVLALIKWVLQVDKTGHSGTLDSNKT 124
           T  P  S PL   IG       + L    NP +HEV+A I+ +L+V+KTGHSGTLD   T
Sbjct: 72  TPIPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVT 130

[Close]

BLAST of CcUC10G206420 vs. ExPASy Swiss-Prot
Match: Q54T81 (Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=nola4 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-11
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 21  EEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILPKNYNYLNIHIGHHT-----H 80
           ++ S +  S+K  Q+   + +IKP+  TP++DTS+ P+L KNY+ L++  GH+T     H
Sbjct: 4   DKKSKSKSSEKSTQE--VEQVIKPEK-TPILDTSKWPLLLKNYDQLSVRTGHYTPIPNGH 63

Query: 81  FPYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVDKTGHSGTLDSNKT 124
            P   P+   ++  I+      NP +HEV+A I+ +L+V KTGHSGTLD   T
Sbjct: 64  SPLKRPIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVT 113

[Close]

BLAST of CcUC10G206420 vs. ExPASy Swiss-Prot
Match: O44081 (H/ACA ribonucleoprotein complex subunit 4 OS=Drosophila melanogaster OX=7227 GN=Nop60B PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-11
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M +V++   K KKK    K+E   P  G D    +   +F IKP S    +DTSQ P+L 
Sbjct: 1   MADVEVRKEKKKKK---IKEE---PLDGDDIGTLQKQGNFQIKPSSKIAELDTSQWPLLL 60

Query: 61  KNYNYLNIHIGHHTHFPY-VSPLSIGLR---------LSILVNPLTHEVLALIKWVLQVD 120
           KN++ LNI   H+T   +  SPL+  ++         L    NP +HEV+A IK +L+V+
Sbjct: 61  KNFDKLNIRSNHYTPLAHGSSPLNRDIKEYMKTGFINLDKPSNPSSHEVVAWIKKILKVE 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 127

[Close]

BLAST of CcUC10G206420 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.1e-31
Identity = 82/133 (61.65%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M EV+IS S+ KKKKH SKDE+VSPA GSD+QPQKD ADFMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHT-----HFPYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T     + P   PL+  +R  IL      NP +HEV+A IK +L+VD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 133

[Close]

BLAST of CcUC10G206420 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-29
Identity = 80/133 (60.15%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M  V+IS S+ KKKKH SKD+EVSPA GSD+QP KDVADFMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHTHF-----PYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T       P   PL+  +R  IL      NP +HEV+A IK +L+V+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 133

[Close]

BLAST of CcUC10G206420 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-29
Identity = 80/133 (60.15%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M  V+IS S+ KKKKH SKD+EVSPA GSD+QP KDVADFMIKPQSFTP VDTSQ PIL 
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHTHF-----PYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T       P   PL+  +R  IL      NP +HEV+A IK +L+V+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 133

[Close]

BLAST of CcUC10G206420 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-29
Identity = 80/133 (60.15%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M +V+IS S+ KKKKH SKDEEVSP  GSD+QP KDVADF+IKPQSFTP VDTSQ PIL 
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHTHF-----PYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T       P   PL   +R  IL      NP +HEV+A IK +L+VD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 133

[Close]

BLAST of CcUC10G206420 vs. ExPASy TrEMBL
Match: A0A6J1I1U9 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470135 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.5e-29
Identity = 79/133 (59.40%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M +V+IS S+ KKKKH SKDEEVSP   SD+QP KDVADF+IKPQSFTP VDTSQ PIL 
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHTHF-----PYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T       P   PL   +R  IL      NP +HEV+A IK +L+VD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 133

[Close]

BLAST of CcUC10G206420 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-22
Identity = 62/133 (46.62%), Postives = 76/133 (57.14%), Query Frame = 0


Query: 1   MLEVKISHSKNKKKKHWSKDEEVSPAFGSDKQPQKDVADFMIKPQSFTPLVDTSQCPILP 60
           M EV ISHSK KK+     D               D  D+MIKPQSFTP +DTSQ PIL 
Sbjct: 1   MAEVDISHSKKKKQDKTEND-------------AADTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61  KNYNYLNIHIGHHT-----HFPYVSPLSIGLRLSIL-----VNPLTHEVLALIKWVLQVD 120
           KNY+ LN+  GH+T     H P   PL   +R  ++      NP +HEV+A IK +L+V+
Sbjct: 61  KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDSNKT 124
           KTGHSGTLD   T
Sbjct: 121 KTGHSGTLDPKVT 120

The following BLAST results are available for this feature:

BLAST of CcUC10G206420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145634.1	6.4e-31	61.65	H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]	[more]
XP_022983194.1	2.7e-29	60.15	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima]	[more]
KAG6580549.1	3.5e-29	60.15	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]
XP_023539854.1	3.5e-29	60.15	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022934839.1	3.5e-29	60.15	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata]	[more]

BLAST of CcUC10G206420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	6.3e-21	46.62	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
O43101	1.4e-12	46.32	H/ACA ribonucleoprotein complex subunit CBF5 OS=Candida albicans (strain SC5314 ...	[more]
P40615	3.1e-12	42.50	H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dk...	[more]
Q54T81	1.2e-11	38.94	Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum O...	[more]
O44081	1.2e-11	39.85	H/ACA ribonucleoprotein complex subunit 4 OS=Drosophila melanogaster OX=7227 GN=...	[more]

BLAST of CcUC10G206420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVU2	3.1e-31	61.65	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1J6M3	1.3e-29	60.15	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1F3Q2	1.7e-29	60.15	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1FP65	1.7e-29	60.15	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I1U9	8.5e-29	59.40	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CcUC10G206420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	4.5e-22	46.62	homologue of NAP57	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 36..111 e-value: 1.3E-7 score: 33.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR23127:SF3	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4	coord: 7..123
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 7..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G206420.1	CcUC10G206420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0006396	RNA processing
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003723	RNA binding