CcUC10G204660 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G204660
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Phytosulfokine-beta
Location	CicolChr10: 31993868 .. 31994666 (+)
RNA-Seq Expression	CcUC10G204660
Synteny	CcUC10G204660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCCTCCACTCCCACTGGACCTATTCCCCTGTTTTTCTTTCCAATAATCATTTCTTTCATTTTCACTCCAAAAACACAATTAAGAGACAGAGAAAAAAATGAACCAGAATTCCCATGGCTTCTTCTTCTTCTTTTTCATCTCTTTTCTCTTCATTTTCCTTCTCTTTTCTTCCCATTCAGCCTCTGCTCGTTTTCCACCATCCAAACAAGGTAAAACCCACTTATAAAAATCTTTCCTTTTTCCTTTTTCCTTTTTCTTGTGTTCATAAATTTAGAAGGAAAAAAAAATTAAAAGTTCTTCCTTTTTCACTAAAAACTTACATTTTCTCACTCTTCTCTCTCTTTCCCTTTGATCTTCCTGGAAAATTTGCAGGTATAGAAGAAACCCACAAGAAGCTCAGCCATGGAATGATCCAAGCAGATTCATGGCCAGATTCCCCCCATGTGAATAAATACCCTTTTTTTTATTTAATTTTCTTTTTCCAATTTTCTTCTTTGGATTTTAATGGGTTTTTGTTTTTTTTTTCTTTTTTTTTGGTAGATAATGGGAGGAAGAGAGAATGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATGGGAGAAGAGAAAGATGATGCTAGAAGCACATTTGGATTATGTTTACACACAAAATGAGAAGCCTTGAATCTAATTGAATTTTCAATGATATGTTTTATGTACATATCCAAATACTAAAAGAATTATTGCTGGTTTCATCATTTTATCATTTATGGATATATAGTTTTATATTGTTTACATGGTCTTCTTTAAT

mRNA sequence

TTTTTCCTCCACTCCCACTGGACCTATTCCCCTGTTTTTCTTTCCAATAATCATTTCTTTCATTTTCACTCCAAAAACACAATTAAGAGACAGAGAAAAAAATGAACCAGAATTCCCATGGCTTCTTCTTCTTCTTTTTCATCTCTTTTCTCTTCATTTTCCTTCTCTTTTCTTCCCATTCAGCCTCTGCTCGTTTTCCACCATCCAAACAAGGTATAGAAGAAACCCACAAGAAGCTCAGCCATGGAATGATCCAAGCAGATTCATGGCCAGATTCCCCCCATATAATGGGAGGAAGAGAGAATGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATGGGAGAAGAGAAAGATGATGCTAGAAGCACATTTGGATTATGTTTACACACAAAATGAGAAGCCTTGAATCTAATTGAATTTTCAATGATATGTTTTATGTACATATCCAAATACTAAAAGAATTATTGCTGGTTTCATCATTTTATCATTTATGGATATATAGTTTTATATTGTTTACATGGTCTTCTTTAAT

Coding sequence (CDS)

ATGAACCAGAATTCCCATGGCTTCTTCTTCTTCTTTTTCATCTCTTTTCTCTTCATTTTCCTTCTCTTTTCTTCCCATTCAGCCTCTGCTCGTTTTCCACCATCCAAACAAGGTATAGAAGAAACCCACAAGAAGCTCAGCCATGGAATGATCCAAGCAGATTCATGGCCAGATTCCCCCCATATAATGGGAGGAAGAGAGAATGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATGGGAGAAGAGAAAGATGATGCTAGAAGCACATTTGGATTATGTTTACACACAAAATGAGAAGCCTTGA

Protein sequence

MNQNSHGFFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHGMIQADSWPDSPHIMGGRENGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQNEKP

Homology

[Close]

BLAST of CcUC10G204660 vs. NCBI nr
Match: XP_038906014.1 (uncharacterized protein LOC120091917 [Benincasa hispida])

HSP 1 Score: 175.6 bits (444), Expect = 2.2e-40
Identity = 93/107 (86.92%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MNQNSHGFFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHGMIQADSWPDSP 60
           MNQNSHGFFFFFF+SFLFIFLLFSSHSASARFP SKQGIEETHKK+SHGM+QADSWPD P
Sbjct: 1   MNQNSHGFFFFFFLSFLFIFLLFSSHSASARFPSSKQGIEETHKKISHGMVQADSWPDFP 60

Query: 61  HIMGGRE----NGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQNEKP 104
           HIMGGRE     G   EEEEEEEEEWEK KMMLEAHLDYVYTQNEKP
Sbjct: 61  HIMGGREKGGGGGGGGEEEEEEEEEWEKGKMMLEAHLDYVYTQNEKP 107

[Close]

BLAST of CcUC10G204660 vs. NCBI nr
Match: XP_022935155.1 (uncharacterized protein LOC111442110 [Cucurbita moschata])

HSP 1 Score: 147.1 bits (370), Expect = 8.2e-32
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MNQNSHGFFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHGMIQADSWPDSP 60
           MNQ+SHGFFFFFF SFLFIFLLF S SASARFP +KQG+ ETH+KL+HG +QADSWPD P
Sbjct: 1   MNQSSHGFFFFFFFSFLFIFLLF-SQSASARFPAAKQGLGETHEKLTHGGVQADSWPDFP 60

Query: 61  HIMGGRENGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQNEK 103
           HI+GGRE G      EEEEE WEKRKMMLEAHLDYVYTQN K
Sbjct: 61  HIIGGREKG------EEEEEGWEKRKMMLEAHLDYVYTQNVK 95

[Close]

BLAST of CcUC10G204660 vs. NCBI nr
Match: KAG6580671.1 (hypothetical protein SDJN03_20673, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-31
Identity = 78/100 (78.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 1   MNQNSHGFFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHGMIQADSWPDSP 60
           MNQ+SHGFFFFFF SFLFIFLLF S SASARFP +KQG+ ETH+KL+HG +QADSWPD P
Sbjct: 1   MNQSSHGFFFFFFFSFLFIFLLF-SQSASARFPAAKQGLGETHEKLTHGGVQADSWPDFP 60

Query: 61  HIMGGRENGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQN 101
           HI+GGRE G      EEEEE WEKRKMMLEAHLDYVYTQN
Sbjct: 61  HIIGGREKG------EEEEEGWEKRKMMLEAHLDYVYTQN 93

[Close]

BLAST of CcUC10G204660 vs. NCBI nr
Match: XP_023528216.1 (putative phytosulfokines 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 5.3e-31
Identity = 77/102 (75.49%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MNQNSHGFFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHGMIQADSWPDSP 60
           MNQ+SHGFFFFFF SFLFIFLLF S SASARFP +KQG+ ETH+KL+HG++QADSW D P
Sbjct: 1   MNQSSHGFFFFFFFSFLFIFLLF-SQSASARFPAAKQGLGETHEKLTHGVVQADSWADFP 60

Query: 61  HIMGGRENGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQNEK 103
           H++GGRE G      EEEEE WEKRKMMLEAHLDYVYTQN K
Sbjct: 61  HMIGGREKG------EEEEEGWEKRKMMLEAHLDYVYTQNVK 95

[Close]

BLAST of CcUC10G204660 vs. NCBI nr
Match: XP_022983167.1 (uncharacterized protein LOC111481800 [Cucurbita maxima])

HSP 1 Score: 141.0 bits (354), Expect = 5.9e-30
Identity = 78/102 (76.47%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MNQNSHGFFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHGMIQADSWPDSP 60
           MNQ+SHGFFFFFF SFLFIFLLF S S SARFP +KQG+ ETH+KL+HG++QADSW D P
Sbjct: 1   MNQSSHGFFFFFF-SFLFIFLLF-SQSTSARFPAAKQGLGETHEKLTHGVVQADSWADFP 60

Query: 61  HIMGGRENGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQNEK 103
           HI+GGRE G     EEEEEE WEKRKMMLEAHLDYVYTQN K
Sbjct: 61  HIIGGREKG-----EEEEEEGWEKRKMMLEAHLDYVYTQNVK 95

[Close]

BLAST of CcUC10G204660 vs. ExPASy TrEMBL
Match: A0A6J1F9T2 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111442110 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.0e-32
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MNQNSHGFFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHGMIQADSWPDSP 60
           MNQ+SHGFFFFFF SFLFIFLLF S SASARFP +KQG+ ETH+KL+HG +QADSWPD P
Sbjct: 1   MNQSSHGFFFFFFFSFLFIFLLF-SQSASARFPAAKQGLGETHEKLTHGGVQADSWPDFP 60

Query: 61  HIMGGRENGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQNEK 103
           HI+GGRE G      EEEEE WEKRKMMLEAHLDYVYTQN K
Sbjct: 61  HIIGGREKG------EEEEEGWEKRKMMLEAHLDYVYTQNVK 95

[Close]

BLAST of CcUC10G204660 vs. ExPASy TrEMBL
Match: A0A6J1IYI6 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111481800 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.8e-30
Identity = 78/102 (76.47%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MNQNSHGFFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHGMIQADSWPDSP 60
           MNQ+SHGFFFFFF SFLFIFLLF S S SARFP +KQG+ ETH+KL+HG++QADSW D P
Sbjct: 1   MNQSSHGFFFFFF-SFLFIFLLF-SQSTSARFPAAKQGLGETHEKLTHGVVQADSWADFP 60

Query: 61  HIMGGRENGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQNEK 103
           HI+GGRE G     EEEEEE WEKRKMMLEAHLDYVYTQN K
Sbjct: 61  HIIGGREKG-----EEEEEEGWEKRKMMLEAHLDYVYTQNVK 95

[Close]

BLAST of CcUC10G204660 vs. ExPASy TrEMBL
Match: A0A1S4DUI1 (Phytosulfokine-beta OS=Cucumis melo OX=3656 GN=LOC107990603 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-28
Identity = 79/109 (72.48%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 2   NQNSHG-----FFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHG-MIQA-D 61
           N+NSHG     FFFFFFISFLFI LLFSSHSASARFPPSK GIEETHKK+S+G M+Q+ D
Sbjct: 81  NRNSHGFFFFFFFFFFFISFLFILLLFSSHSASARFPPSKHGIEETHKKISYGSMVQSGD 140

Query: 62  SWPDSPHIMGGRENGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQNEKP 104
           SWPD PH+        E++EEE EEEE EKRKMMLEAHLDYVYTQ+E P
Sbjct: 141 SWPDFPHVK------REKDEEEVEEEEGEKRKMMLEAHLDYVYTQHENP 183

[Close]

BLAST of CcUC10G204660 vs. ExPASy TrEMBL
Match: A0A6J1KTY7 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111498637 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 72/103 (69.90%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MNQNSHGFFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHGMIQADSWPDSP 60
           MNQ+SHGF  FF   + FIFLL  S SA+ARF P+KQG EETH KLSHGMIQADSWPD P
Sbjct: 1   MNQSSHGFSSFF---YFFIFLLL-SQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFP 60

Query: 61  HIMGGRENGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQNEKP 104
            I+          EEEEE+EEWEKR+MMLEAHLDYVYTQNEKP
Sbjct: 61  QII---------REEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 90

[Close]

BLAST of CcUC10G204660 vs. ExPASy TrEMBL
Match: A0A6J1FSF0 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447730 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-23
Identity = 66/103 (64.08%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 1   MNQNSHGFFFFFFISFLFIFLLFSSHSASARFPPSKQGIEETHKKLSHGMIQADSWPDSP 60
           MNQ+SHG FF F         L  S SA+ARF P+KQG EETH KLSHGMIQ DSWPD P
Sbjct: 1   MNQSSHGLFFIF---------LLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFP 60

Query: 61  HIMGGRENGEEEEEEEEEEEEWEKRKMMLEAHLDYVYTQNEKP 104
            I+           EEEE+EEWEKR+MMLEAHLDYVYTQNEKP
Sbjct: 61  QII----------REEEEDEEWEKRRMMLEAHLDYVYTQNEKP 84

The following BLAST results are available for this feature:

BLAST of CcUC10G204660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906014.1	2.2e-40	86.92	uncharacterized protein LOC120091917 [Benincasa hispida]	[more]
XP_022935155.1	8.2e-32	77.45	uncharacterized protein LOC111442110 [Cucurbita moschata]	[more]
KAG6580671.1	1.4e-31	78.00	hypothetical protein SDJN03_20673, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023528216.1	5.3e-31	75.49	putative phytosulfokines 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022983167.1	5.9e-30	76.47	uncharacterized protein LOC111481800 [Cucurbita maxima]	[more]

BLAST of CcUC10G204660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G204660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9T2	4.0e-32	77.45	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111442110 PE=3 SV=1	[more]
A0A6J1IYI6	2.8e-30	76.47	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111481800 PE=3 SV=1	[more]
A0A1S4DUI1	2.7e-28	72.48	Phytosulfokine-beta OS=Cucumis melo OX=3656 GN=LOC107990603 PE=3 SV=1	[more]
A0A6J1KTY7	1.2e-25	69.90	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111498637 PE=3 SV=1	[more]
A0A6J1FSF0	1.5e-23	64.08	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447730 PE=3 SV=1	[more]

BLAST of CcUC10G204660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 70..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..83
None	No IPR available	PANTHER	PTHR33285:SF33	PHYTOSULFOKINES 6-RELATED	coord: 11..103
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 19..102 e-value: 7.4E-14 score: 52.5
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 11..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G204660.1	CcUC10G204660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008083	growth factor activity