CcUC10G202660 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G202660
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 29928247 .. 29929258 (+)
RNA-Seq Expression	CcUC10G202660
Synteny	CcUC10G202660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAAAAGAGGAGTGATTTCACTGGAATCAGAAGAGTTGAAGTGCAAACACTTCAAAGTGACCAGTGTAGATGCTGGGTCGAGTCAAAGGCACCGGAATGTCCAAGTTCCATGTATGGCCTTCTACCTTGATGAGGAAACTGGACATCACCAGAGAAAGAACTGGTAAGAGCCTGTGAAACTTGGTGATTGAGACCCAGATCAGATGTCAGGTCCAGGGAGCTGCTAGCGGGAACTTCATTCCCCTTGAAACCCCACGACATGGTCGGAAAATGATTGGTAGCAGCATGAGGTGTAGCTGTTTGAGCCACAAGTGCACCTTCAGCATTTAACAAGGCATTTACCTCGACAGCCGTTGTTCGGTTTCTGGAGCCCCATGTTTGGTTTGACAGAAGAGAGAGAGCACAGGATGAGTCAGCAACTCCATTGATGCATCCACCAGAAGGATTCCCAGGACCAGAAAAGCTGGTTCCACCTGAAGGAGGAACTGGCAAGAGAAGTTCAGATGGATTGTTCTCAGAGTTGCTCTGCCAGGGATGTGGGACGTATTTCCCCATGGAAGTGATGCTCTGGTTTCCAGGTACCTGCTCAGATGCTTTCGTCCCGGACGACCAGACATCTTTTCCTGTTAGCTTTGGATATGCACTGAAATCCATTAGAAAGCTTCCAACTCTGCTGCTGTTTTCTATCATTGCAAGCAGCAAACACATGGTTAGTCTTTGCACAAAGACTAAGTTGATAAAAAGAAATAGGCAGATGAAGCTGGAGGGATGGTGATGGCCATGACTAACCAAAGATAGATGAAGAGAAGCGGCCATAACGTGTGGATAATAGCGACCCAGGTGGAGGCTTCCTACGGCGCTCGTTGTGACCAGCCAGACGTCTGCGACAACTACGTTTTCCTTGATCAAATTCAGGAAGCTGATGAAATCTGGCAAAAACCAAATCAGCATTCAGTTTCAGTAAGCTACTTGAGAAGAAAACATAACACATCTGGAAACACTAAACACTAA

mRNA sequence

CCTAAAAGAGGAGTGATTTCACTGGAATCAGAAGAGTTGAAGTGCAAACACTTCAAAGTGACCAGTGTAGATGCTGGGTCGAGTCAAAGGCACCGGAATGTCCAAGTTCCATGTATGGCCTTCTACCTTGATGAGGAAACTGGACATCACCAGAGAAAGAACTGGTCCAGGGAGCTGCTAGCGGGAACTTCATTCCCCTTGAAACCCCACGACATGGCATTTACCTCGACAGCCGTTGTTCGGTTTCTGGAGCCCCATGTTTGGTTTGACAGAAGAGAGAGAGCACAGGATGAGTCAGCAACTCCATTGATGCATCCACCAGAAGGATTCCCAGGACCAGAAAAGCTGGTTCCACCTGAAGGAGGAACTGGCAAGAGAAGTTCAGATGGATTGTTCTCAGAGTTGCTCTGCCAGGGATGTGGGACGTATTTCCCCATGGAAGTGATGCTCTGGTTTCCAGGTACCTGCTCAGATGCTTTCGTCCCGGACGACCAGACATCTTTTCCTGTTAGCTTTGGATATGCACTGAAATCCATTAGAAAGCTTCCAACTCTGCTGCTGTTTTCTATCATTGCAAGCAGCAAACACATGATGAAGAGAAGCGGCCATAACGTGTGGATAATAGCGACCCAGGTGGAGGCTTCCTACGGCGCTCGTTGTGACCAGCCAGACGTCTGCGACAACTACGTTTTCCTTGATCAAATTCAGGAAGCTGATGAAATCTGGCAAAAACCAAATCAGCATTCAGTTTCAGTAAGCTACTTGAGAAGAAAACATAACACATCTGGAAACACTAAACACTAA

Coding sequence (CDS)

CCTAAAAGAGGAGTGATTTCACTGGAATCAGAAGAGTTGAAGTGCAAACACTTCAAAGTGACCAGTGTAGATGCTGGGTCGAGTCAAAGGCACCGGAATGTCCAAGTTCCATGTATGGCCTTCTACCTTGATGAGGAAACTGGACATCACCAGAGAAAGAACTGGTCCAGGGAGCTGCTAGCGGGAACTTCATTCCCCTTGAAACCCCACGACATGGCATTTACCTCGACAGCCGTTGTTCGGTTTCTGGAGCCCCATGTTTGGTTTGACAGAAGAGAGAGAGCACAGGATGAGTCAGCAACTCCATTGATGCATCCACCAGAAGGATTCCCAGGACCAGAAAAGCTGGTTCCACCTGAAGGAGGAACTGGCAAGAGAAGTTCAGATGGATTGTTCTCAGAGTTGCTCTGCCAGGGATGTGGGACGTATTTCCCCATGGAAGTGATGCTCTGGTTTCCAGGTACCTGCTCAGATGCTTTCGTCCCGGACGACCAGACATCTTTTCCTGTTAGCTTTGGATATGCACTGAAATCCATTAGAAAGCTTCCAACTCTGCTGCTGTTTTCTATCATTGCAAGCAGCAAACACATGATGAAGAGAAGCGGCCATAACGTGTGGATAATAGCGACCCAGGTGGAGGCTTCCTACGGCGCTCGTTGTGACCAGCCAGACGTCTGCGACAACTACGTTTTCCTTGATCAAATTCAGGAAGCTGATGAAATCTGGCAAAAACCAAATCAGCATTCAGTTTCAGTAAGCTACTTGAGAAGAAAACATAACACATCTGGAAACACTAAACACTAA

Protein sequence

PKRGVISLESEELKCKHFKVTSVDAGSSQRHRNVQVPCMAFYLDEETGHHQRKNWSRELLAGTSFPLKPHDMAFTSTAVVRFLEPHVWFDRRERAQDESATPLMHPPEGFPGPEKLVPPEGGTGKRSSDGLFSELLCQGCGTYFPMEVMLWFPGTCSDAFVPDDQTSFPVSFGYALKSIRKLPTLLLFSIIASSKHMMKRSGHNVWIIATQVEASYGARCDQPDVCDNYVFLDQIQEADEIWQKPNQHSVSVSYLRRKHNTSGNTKH

Homology

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BLAST of CcUC10G202660 vs. ExPASy TrEMBL
Match: A0A2P2N1E5 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.1e-04
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 198 MKRSGHNVWIIATQVEASYGARCDQPDVCDNYVFLDQIQEADEIWQK 245
           +K+ GH+      QV ASY AR DQ   C N+VFL QIQEADEIW++
Sbjct: 7   LKKLGHSGLTAMIQVVASYVARYDQLGACGNFVFLGQIQEADEIWKQ 53

The following BLAST results are available for this feature:

BLAST of CcUC10G202660 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G202660 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G202660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2N1E5	9.1e-04	55.32	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of CcUC10G202660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G202660.1	CcUC10G202660.1	mRNA