CcUC10G202190 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G202190
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionOxidored_q6 domain-containing protein
LocationCicolChr10: 29296788 .. 29297650 (-)
RNA-Seq ExpressionCcUC10G202190
SyntenyCcUC10G202190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGTAAGAAAATAAAAATTGAATGTTATCTCATTGAACTGAGTTTAGTCTTAAGAGTAAACTACGATTTTGGTATATGAGGACTTAACTTCATTTCCATTTGGACAACACTTGTGTCACGACCAGACATCTTTACAAAACATTCAAGTTAATTATTCACTATTTGGACGAGGGCTTCTAAAAACATCGTAAGCTAAACCCGTGCTGACGAATAACCAACCTGCAATGAATAGAGAAGGTATAGTAATGCTATGAATGACCCAGTATCGAATACTGGTGATAATATCAGCAAAAGAACGTTCTCCTGTGCTTCCAGACATGCCGAGCTCCACATATTCTTGTACAGTCAAAAGGGGATCGATTCCGTAAAAGATGAGATCAGTAAATGGAAATTAACTGAAATTATATCTTTGTAAGATCGTCAATATTGTACCGAGGGTGTTTTTAGAGTATACCGAATCAGTATAGCTATCCTTCTTCTGACGCAGCAACGCAATTTCACAATAAGTATCGAAATGAAGCACTAAATAATTTGTTTCTTCTTTTCTTGGTGCTTGTCGATGTAGAATCATGCACCATTCATTCAATAGAAAATTCTGAAAATTCCTGTCTGTAGTATTAAGGGTTCTCTCGGTTATTGGCTTCGGGCTAGAAAGCGAAGATTGGGTAAAATGTGAATCCGACTGGTTGGTTTATAATAATTCAGGAAGCAGATTCTTATAGTCCCAAAATTCACTTAAATTAGAGGTGAAATCTAGAAATATTTCTTTTGTGTTTGTAGTTATATTTTTGTTTGAATCTTTTTTGTTTATTTTAAGGAATTGGTTAGTCGTCCAGTAACAAGTAAGAGTAGTACATAG

mRNA sequence

ATGGTAAGAAGGTATAGTAATGCTATGAATGACCCAGTATCGAATACTGGTGATAATATCAGCAAAAGAACGTTCTCCTGTGCTTCCAGACATGCCGAGCTCCACATATTCTTGTACAGTCAAAAGGGGATCGATTCCGTAAAAGATGAGATCATATTAAGGGTTCTCTCGGTTATTGGCTTCGGGCTAGAAAGCGAAGATTGGGTAAAATGTGAATCCGACTGGTTGGAATTGGTTAGTCGTCCAGTAACAAGTAAGAGTAGTACATAG

Coding sequence (CDS)

ATGGTAAGAAGGTATAGTAATGCTATGAATGACCCAGTATCGAATACTGGTGATAATATCAGCAAAAGAACGTTCTCCTGTGCTTCCAGACATGCCGAGCTCCACATATTCTTGTACAGTCAAAAGGGGATCGATTCCGTAAAAGATGAGATCATATTAAGGGTTCTCTCGGTTATTGGCTTCGGGCTAGAAAGCGAAGATTGGGTAAAATGTGAATCCGACTGGTTGGAATTGGTTAGTCGTCCAGTAACAAGTAAGAGTAGTACATAG

Protein sequence

MVRRYSNAMNDPVSNTGDNISKRTFSCASRHAELHIFLYSQKGIDSVKDEIILRVLSVIGFGLESEDWVKCESDWLELVSRPVTSKSST
Homology
[Close]
BLAST of CcUC10G202190 vs. NCBI nr
Match: CAB4102552.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 94.4 bits (233), Expect = 5.4e-16
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 4   RYSNAMNDPVSNTGDNISKRTFSCASRHAELHIFLYSQKGIDSVKDEI 52
           RYSNAMNDPV+NTG+NISKRTFSCASRHAELHIFLYSQKGIDSVKD I
Sbjct: 765 RYSNAMNDPVANTGNNISKRTFSCASRHAELHIFLYSQKGIDSVKDWI 812

[Close]
BLAST of CcUC10G202190 vs. NCBI nr
Match: KAF1876835.1 (hypothetical protein Lal_00033123 [Lupinus albus])

HSP 1 Score: 85.5 bits (210), Expect = 2.5e-13
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 9  MNDPVSNTGDNISKRTFSCASRHAELHIFLYSQKGIDSVKDEIILR 55
          MN+PVSNTG+NISKRTFSCASRH ELHIFLYS+KG+DS+KDEII R
Sbjct: 1  MNNPVSNTGNNISKRTFSCASRHVELHIFLYSKKGVDSIKDEIINR 46

[Close]
BLAST of CcUC10G202190 vs. NCBI nr
Match: KOM47274.1 (hypothetical protein LR48_Vigan07g097800 [Vigna angularis])

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 9  MNDPVSNTGDNISKRTFSCASRHAELHIFLYSQK-GIDSVKDEI 52
          MN+PVS+TG+NISKRTFSCASRH ELHIFLYSQK G++S+KD+I
Sbjct: 1  MNNPVSDTGNNISKRTFSCASRHLELHIFLYSQKGGVESIKDKI 44

[Close]
BLAST of CcUC10G202190 vs. ExPASy TrEMBL
Match: A0A6S7NP34 (Oxidored_q6 domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS29832 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.6e-16
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 4   RYSNAMNDPVSNTGDNISKRTFSCASRHAELHIFLYSQKGIDSVKDEI 52
           RYSNAMNDPV+NTG+NISKRTFSCASRHAELHIFLYSQKGIDSVKD I
Sbjct: 765 RYSNAMNDPVANTGNNISKRTFSCASRHAELHIFLYSQKGIDSVKDWI 812

[Close]
BLAST of CcUC10G202190 vs. ExPASy TrEMBL
Match: A0A6A5N344 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033123 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 9  MNDPVSNTGDNISKRTFSCASRHAELHIFLYSQKGIDSVKDEIILR 55
          MN+PVSNTG+NISKRTFSCASRH ELHIFLYS+KG+DS+KDEII R
Sbjct: 1  MNNPVSNTGNNISKRTFSCASRHVELHIFLYSKKGVDSIKDEIINR 46

[Close]
BLAST of CcUC10G202190 vs. ExPASy TrEMBL
Match: A0A0L9UXJ3 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g097800 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 9  MNDPVSNTGDNISKRTFSCASRHAELHIFLYSQK-GIDSVKDEI 52
          MN+PVS+TG+NISKRTFSCASRH ELHIFLYSQK G++S+KD+I
Sbjct: 1  MNNPVSDTGNNISKRTFSCASRHLELHIFLYSQKGGVESIKDKI 44

The following BLAST results are available for this feature:
BLAST of CcUC10G202190 vs. NCBI nr
Match NameE-valueIdentityDescription
CAB4102552.15.4e-1693.75unnamed protein product [Lactuca saligna][more]
KAF1876835.12.5e-1384.78hypothetical protein Lal_00033123 [Lupinus albus][more]
KOM47274.14.5e-1079.55hypothetical protein LR48_Vigan07g097800 [Vigna angularis][more]
BLAST of CcUC10G202190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC10G202190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6S7NP342.6e-1693.75Oxidored_q6 domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS2... [more]
A0A6A5N3441.2e-1384.78Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033123 PE=4 SV=1[more]
A0A0L9UXJ32.2e-1079.55Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g097800 PE... [more]
BLAST of CcUC10G202190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G202190.1CcUC10G202190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding