CcUC10G201550 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G201550
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Werner Syndrome-like exonuclease
Location	CicolChr10: 28719010 .. 28719531 (-)
RNA-Seq Expression	CcUC10G201550
Synteny	CcUC10G201550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGATCCTTCTCTTTCGTCGGCGTCGGAATCCGCCAGGACGCTCAAAAAGCTCTACGACTGCTACGGGCTGAGTGTTACCAACATTGTGGATCTTAGGGAGTTGGCTGCCAATAAGATGGGGAGAACAGACCTGAGAACTGCGGGACTGAAGAGTCTAGGGTTAGCGGTTCTCGGGAGGGAGATGGATAAGCCGAAAAATGTGAGTCTGAGTCAATGGGATTGCGAACGGCTGGATCATTCTCAGGTACTCTATGCTACTATTGATGCTTTTATGTCATTTGAGATTGGAAGAAATCTCATGAGTTGACTGGAATAGAATCGAGTTGAATCCGTTGTTTAGGGATTTTGATGGTGAAATTAGGGGTTCGGATCGAATTGAATCCGATGTTTAGAGATTTTGATGGTGAAATCAGGGTTTCTAGGATTTGGTTGTTCTCTTTTCATGGCTGTTTTGGTGGATTCTGTTTAGGATGGTCTCCTTGAGCTTTTGCAAATGGAAAATCATGTCCATAACTGA

mRNA sequence

ATGACGGATCCTTCTCTTTCGTCGGCGTCGGAATCCGCCAGGACGCTCAAAAAGCTCTACGACTGCTACGGGCTGAGTGTTACCAACATTGTGGATCTTAGGGAGTTGGCTGCCAATAAGATGGGGAGAACAGACCTGAGAACTGCGGGACTGAAGAGTCTAGGGTTAGCGGTTCTCGGGAGGGAGATGGATAAGCCGAAAAATGTGAGTCTGAGTCAATGGGATTGCGAACGGCTGGATCATTCTCAGGATGGTCTCCTTGAGCTTTTGCAAATGGAAAATCATGTCCATAACTGA

Coding sequence (CDS)

ATGACGGATCCTTCTCTTTCGTCGGCGTCGGAATCCGCCAGGACGCTCAAAAAGCTCTACGACTGCTACGGGCTGAGTGTTACCAACATTGTGGATCTTAGGGAGTTGGCTGCCAATAAGATGGGGAGAACAGACCTGAGAACTGCGGGACTGAAGAGTCTAGGGTTAGCGGTTCTCGGGAGGGAGATGGATAAGCCGAAAAATGTGAGTCTGAGTCAATGGGATTGCGAACGGCTGGATCATTCTCAGGATGGTCTCCTTGAGCTTTTGCAAATGGAAAATCATGTCCATAACTGA

Protein sequence

MTDPSLSSASESARTLKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQDGLLELLQMENHVHN

Homology

[Close]

BLAST of CcUC10G201550 vs. NCBI nr
Match: KAE8651171.1 (hypothetical protein Csa_002533 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 16  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWD 75
           ++KLY  YGL+V+N+VDLR+LA NK+GRT LR AGLKSL   VLGRE++KPK ++LS WD
Sbjct: 123 VQKLYHEYGLTVSNVVDLRDLAVNKLGRTYLRYAGLKSLWREVLGREIEKPKYITLSNWD 182

Query: 76  CERLDHSQ 84
              L+++Q
Sbjct: 183 SVWLNYAQ 190

[Close]

BLAST of CcUC10G201550 vs. NCBI nr
Match: XP_004136772.1 (Werner Syndrome-like exonuclease [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 16  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWD 75
           ++KLY  YGL+V+N+VDLR+LA NK+GRT LR AGLKSL   VLGRE++KPK ++LS WD
Sbjct: 123 VQKLYHEYGLTVSNVVDLRDLAVNKLGRTYLRYAGLKSLWREVLGREIEKPKYITLSNWD 182

Query: 76  CERLDHSQ 84
              L+++Q
Sbjct: 183 SVWLNYAQ 190

[Close]

BLAST of CcUC10G201550 vs. NCBI nr
Match: XP_038906336.1 (Werner Syndrome-like exonuclease [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 8.1e-13
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 16  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWD 75
           +++LY+ Y L V N VDLRELAAN+M R DL+ AGLK LG  VLGRE+DKP+NV+LSQWD
Sbjct: 123 VQQLYNDYDLKVANTVDLRELAANEMERDDLKNAGLKILGREVLGREIDKPRNVTLSQWD 182

Query: 76  CERLDHSQ 84
            + L   Q
Sbjct: 183 RQCLSPGQ 190

[Close]

BLAST of CcUC10G201550 vs. NCBI nr
Match: KAE8651170.1 (hypothetical protein Csa_000755 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-12
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 18  KLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCE 77
           KLY+ Y L+V N VDLRELAA++M   + RTAGLK+LG  VLGRE+DKP+NV LS+WD +
Sbjct: 125 KLYNDYDLNVANTVDLRELAADEMQSDEFRTAGLKTLGREVLGREIDKPRNVKLSRWDRQ 184

Query: 78  RLDHSQ 84
            L+ +Q
Sbjct: 185 WLNPAQ 190

[Close]

BLAST of CcUC10G201550 vs. NCBI nr
Match: XP_004136771.1 (Werner Syndrome-like exonuclease [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-12
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 18  KLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCE 77
           KLY+ Y L+V N VDLRELAA++M   + RTAGLK+LG  VLGRE+DKP+NV LS+WD +
Sbjct: 125 KLYNDYDLNVANTVDLRELAADEMQSDEFRTAGLKTLGREVLGREIDKPRNVKLSRWDRQ 184

Query: 78  RLDHSQ 84
            L+ +Q
Sbjct: 185 WLNPAQ 190

[Close]

BLAST of CcUC10G201550 vs. ExPASy TrEMBL
Match: A0A0A0LFG2 (3'-5' exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G819840 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 16  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWD 75
           ++KLY  YGL+V+N+VDLR+LA NK+GRT LR AGLKSL   VLGRE++KPK ++LS WD
Sbjct: 123 VQKLYHEYGLTVSNVVDLRDLAVNKLGRTYLRYAGLKSLWREVLGREIEKPKYITLSNWD 182

Query: 76  CERLDHSQ 84
              L+++Q
Sbjct: 183 SVWLNYAQ 190

[Close]

BLAST of CcUC10G201550 vs. ExPASy TrEMBL
Match: A0A0A0LHC5 (3'-5' exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G819830 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 18  KLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCE 77
           KLY+ Y L+V N VDLRELAA++M   + RTAGLK+LG  VLGRE+DKP+NV LS+WD +
Sbjct: 125 KLYNDYDLNVANTVDLRELAADEMQSDEFRTAGLKTLGREVLGREIDKPRNVKLSRWDRQ 184

Query: 78  RLDHSQ 84
            L+ +Q
Sbjct: 185 WLNPAQ 190

[Close]

BLAST of CcUC10G201550 vs. ExPASy TrEMBL
Match: A0A7N2M2Z8 (3'-5' exonuclease domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.2e-11
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 13  ARTLKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLS 72
           A  ++KL D Y L V N+VDLR LA +++G  DL+ AGLK L  AVLG E+ KP++V++S
Sbjct: 119 ASDVEKLLDDYDLKVGNVVDLRGLAVDRLGNRDLKNAGLKGLARAVLGLEVHKPRHVTMS 178

Query: 73  QWDCERLDHSQ 84
           +WD E LD++Q
Sbjct: 179 RWDNEWLDYNQ 189

[Close]

BLAST of CcUC10G201550 vs. ExPASy TrEMBL
Match: A0A6J1D121 (Werner Syndrome-like exonuclease OS=Momordica charantia OX=3673 GN=LOC111016622 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 17  KKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDC 76
           +KL+D Y L+V N VDLR +A ++ GR DLR AGLK L   +LGRE+ KPK V++S+WD 
Sbjct: 115 RKLFDDYDLTVNNAVDLRSMAVDRTGRRDLRNAGLKDLAREILGREIAKPKAVTMSRWDD 174

Query: 77  ERLDHSQ 84
           E L  +Q
Sbjct: 175 EYLTSAQ 181

[Close]

BLAST of CcUC10G201550 vs. ExPASy TrEMBL
Match: A0A6J1D107 (Werner Syndrome-like exonuclease OS=Momordica charantia OX=3673 GN=LOC111016613 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 16  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWD 75
           ++KL   YGL+V+N VDLR LA N MGR DL+ AGLK L   VLG+E+ KPK+V++S+WD
Sbjct: 119 VEKLLCDYGLNVSNTVDLRNLAENAMGRGDLKNAGLKGLAKEVLGKEISKPKSVTMSRWD 178

Query: 76  CERLDHSQ 84
            E L  +Q
Sbjct: 179 NEWLVPNQ 186

The following BLAST results are available for this feature:

BLAST of CcUC10G201550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651171.1	6.2e-13	60.29	hypothetical protein Csa_002533 [Cucumis sativus]	[more]
XP_004136772.1	6.2e-13	60.29	Werner Syndrome-like exonuclease [Cucumis sativus]	[more]
XP_038906336.1	8.1e-13	61.76	Werner Syndrome-like exonuclease [Benincasa hispida]	[more]
KAE8651170.1	6.9e-12	60.61	hypothetical protein Csa_000755 [Cucumis sativus]	[more]
XP_004136771.1	6.9e-12	60.61	Werner Syndrome-like exonuclease [Cucumis sativus]	[more]

BLAST of CcUC10G201550 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G201550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFG2	3.0e-13	60.29	3'-5' exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G...	[more]
A0A0A0LHC5	3.3e-12	60.61	3'-5' exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G...	[more]
A0A7N2M2Z8	8.2e-11	52.11	3'-5' exonuclease domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6J1D121	1.8e-10	53.73	Werner Syndrome-like exonuclease OS=Momordica charantia OX=3673 GN=LOC111016622 ...	[more]
A0A6J1D107	2.4e-10	55.88	Werner Syndrome-like exonuclease OS=Momordica charantia OX=3673 GN=LOC111016613 ...	[more]

BLAST of CcUC10G201550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 11..84 e-value: 9.3E-16 score: 59.9
None	No IPR available	PANTHER	PTHR13620:SF65	OS01G0660800 PROTEIN	coord: 15..83
None	No IPR available	PANTHER	PTHR13620	3-5 EXONUCLEASE	coord: 15..83
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 16..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G201550.1	CcUC10G201550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding