CcUC10G201440 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G201440
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr10: 28551125 .. 28551334 (-)
RNA-Seq ExpressionCcUC10G201440
SyntenyCcUC10G201440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAGTCGATGATCCGCGTCGGTTTTGATGGTAAAGTTTTACAGAATCTTCTGCGGCGTGGTTCTGGTGCTGTGGACGGCGGCGCTGGTGGTGCTGCCGGTGGTTCTGCCGCCACTTCCTCCGCCGCCATTGCCGGTTCTTCTTGTGCCTGTTTTCATTTTGGGAGTTCTTGTTTTTTGTGCTTTCTCTACTTCTCAGCTGCCTGA

mRNA sequence

ATGATCAAGTCGATGATCCGCGTCGGTTTTGATGGTAAAGTTTTACAGAATCTTCTGCGGCGTGGTTCTGGTGCTGTGGACGGCGGCGCTGGTGGTGCTGCCGGTGGTTCTGCCGCCACTTCCTCCGCCGCCATTGCCGGTTCTTCTTGTGCCTGTTTTCATTTTGGGAGTTCTTGTTTTTTGTGCTTTCTCTACTTCTCAGCTGCCTGA

Coding sequence (CDS)

ATGATCAAGTCGATGATCCGCGTCGGTTTTGATGGTAAAGTTTTACAGAATCTTCTGCGGCGTGGTTCTGGTGCTGTGGACGGCGGCGCTGGTGGTGCTGCCGGTGGTTCTGCCGCCACTTCCTCCGCCGCCATTGCCGGTTCTTCTTGTGCCTGTTTTCATTTTGGGAGTTCTTGTTTTTTGTGCTTTCTCTACTTCTCAGCTGCCTGA

Protein sequence

MIKSMIRVGFDGKVLQNLLRRGSGAVDGGAGGAAGGSAATSSAAIAGSSCACFHFGSSCFLCFLYFSAA
Homology
BLAST of CcUC10G201440 vs. NCBI nr
Match: KAA0053879.1 (hypothetical protein E6C27_scaffold135G002720 [Cucumis melo var. makuwa] >TYK25525.1 hypothetical protein E5676_scaffold352G006770 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 5  MIRVGFDGKVLQNLLRRGSGAVDGGAGGAAGGSAATSSAAIAGSSCACFHFGSSCFLCFL 64
          ++ VGFDGKV +  L RGS A+DGGA GA+ G AA SS  IAGSSCACF  G+SCFLCFL
Sbjct: 4  VVVVGFDGKVFRIDLPRGSRAMDGGARGASCGVAAASSTPIAGSSCACFDIGNSCFLCFL 63

Query: 65 YFSAA 70
          +FSAA
Sbjct: 64 HFSAA 68

BLAST of CcUC10G201440 vs. ExPASy TrEMBL
Match: A0A0A0LEW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821035 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 8  VGFDGKVLQNLLRRGSGAVDGGAGGAAGGSAATSSAAIAGSSCACFHFGSSCFLCFLYFS 67
          VGFDGKVL++ LRRGSGA+DGGAGGA+GG AA SS  IA SSCACF  GSSCFLCFL+FS
Sbjct: 5  VGFDGKVLRSHLRRGSGAMDGGAGGASGGVAAASSTTIARSSCACFDIGSSCFLCFLHFS 64

Query: 68 AA 70
          AA
Sbjct: 65 AA 66

BLAST of CcUC10G201440 vs. ExPASy TrEMBL
Match: A0A5D3DPV7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006770 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 5  MIRVGFDGKVLQNLLRRGSGAVDGGAGGAAGGSAATSSAAIAGSSCACFHFGSSCFLCFL 64
          ++ VGFDGKV +  L RGS A+DGGA GA+ G AA SS  IAGSSCACF  G+SCFLCFL
Sbjct: 4  VVVVGFDGKVFRIDLPRGSRAMDGGARGASCGVAAASSTPIAGSSCACFDIGNSCFLCFL 63

Query: 65 YFSAA 70
          +FSAA
Sbjct: 64 HFSAA 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0053879.12.2e-0967.69hypothetical protein E6C27_scaffold135G002720 [Cucumis melo var. makuwa] >TYK255... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LEW15.6e-1479.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821035 PE=4 SV=1[more]
A0A5D3DPV71.1e-0967.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G201440.1CcUC10G201440.1mRNA