CcUC10G201420 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G201420
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr10: 28522481 .. 28522975 (+)
RNA-Seq ExpressionCcUC10G201420
SyntenyCcUC10G201420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGACAACGGAGCTGACCACGGGCGCTGGTTTGGTTCTTTTCCTTCTCCTTCTTTCGATGGTACAAAACCATCGAGTGCGAAACGCTATTATTCAGACGTTTCCACTCTTGTCGTGTCCTTGCAGGAAAGAGGTTTCTTCGGTAACATAAGATTCAATTGTAAGAAGAATCATACGGTTAATTCTTGTTTGATCTGCAAAATCTCGGTATCGTCTTTCTTTGGTCAGATTTTTTCGTCGACGATTGACATAGAAAGCAAGAGAACCCTATGATCAATATTTTGATGGTCAATTATTGCAGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTTTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGATATTGGCTGTTTTGTTATTGTTGGCTTTCTCTTCTCCCCGTCGGATACCCAACACTGCCATGATAATTTGCTGCTGAGGTGA

mRNA sequence

GCGACAACGGAGCTGACCACGGGCGCTGGTTTGGTTCTTTTCCTTCTCCTTCTTTCGATGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTTTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGATATTGGCTGTTTTGTTATTGTTGGCTTTCTCTTCTCCCCGTCGGATACCCAACACTGCCATGATAATTTGCTGCTGAGGTGA

Coding sequence (CDS)

GCGACAACGGAGCTGACCACGGGCGCTGGTTTGGTTCTTTTCCTTCTCCTTCTTTCGATGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTTTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGATATTGGCTGTTTTGTTATTGTTGGCTTTCTCTTCTCCCCGTCGGATACCCAACACTGCCATGATAATTTGCTGCTGAGGTGA

Protein sequence

ATTELTTGAGLVLFLLLLSMPKFSDGFTCVDSFFASVAFGGAAASSATVGGSQLAGFDIGCFVIVGFLFSPSDTQHCHDNLLLR
Homology
[Close]
BLAST of CcUC10G201420 vs. NCBI nr
Match: XP_008443266.1 (PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 uncharacterized protein E6C27_scaffold135G002710 [Cucumis melo var. makuwa] >TYK25526.1 uncharacterized protein E5676_scaffold352G006780 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 9.1e-13
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 22  KFSDGFTCVDSFFASVAFGGAAASSATVGGSQLAGFDIGCFVIVGFLFSPS 73
           KFSDGFTCVDSFFASVA GGAAASS TVG S+ AGFDIGCFV++GFLF  S
Sbjct: 54  KFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSS 104

[Close]
BLAST of CcUC10G201420 vs. ExPASy TrEMBL
Match: A0A5D3DPE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006780 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 22  KFSDGFTCVDSFFASVAFGGAAASSATVGGSQLAGFDIGCFVIVGFLFSPS 73
           KFSDGFTCVDSFFASVA GGAAASS TVG S+ AGFDIGCFV++GFLF  S
Sbjct: 54  KFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSS 104

[Close]
BLAST of CcUC10G201420 vs. ExPASy TrEMBL
Match: A0A1S3B754 (uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 22  KFSDGFTCVDSFFASVAFGGAAASSATVGGSQLAGFDIGCFVIVGFLFSPS 73
           KFSDGFTCVDSFFASVA GGAAASS TVG S+ AGFDIGCFV++GFLF  S
Sbjct: 54  KFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSS 104

[Close]
BLAST of CcUC10G201420 vs. ExPASy TrEMBL
Match: A0A0A0LBQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.8e-13
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 22 KFSDGFTCVDSFFASVAFGGAAASSATVGGSQLAGFDIGCFVIVGFLFSPSD 74
          KFSDGFT VDSFFASVA GGAAASSATVG S+ AGFDIGCFV++GFLF  +D
Sbjct: 43 KFSDGFTSVDSFFASVATGGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTD 94

The following BLAST results are available for this feature:
BLAST of CcUC10G201420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443266.19.1e-1382.35PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 unc... [more]
BLAST of CcUC10G201420 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC10G201420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DPE04.4e-1382.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B7544.4e-1382.35uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=... [more]
A0A0A0LBQ99.8e-1380.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1[more]
BLAST of CcUC10G201420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G201420.1CcUC10G201420.1mRNA