CcUC10G196110 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G196110
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionU1 small nuclear ribonucleoprotein A
LocationCicolChr10: 21983047 .. 21987884 (-)
RNA-Seq ExpressionCcUC10G196110
SyntenyCcUC10G196110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCGGCCAGACCTCTGCGAGCGGAGTGGCATTGCACGTATCGGTCAGTGACGTCCTTGCTCTTTCAACATTCTTCGCATTTCCACTTGAGCATTTCTATTCGGCGGACAAAGGTCAAAGAAATGGCGGAGGTCAACAGCACTGGCAACGAAGTTCCTCCGAACATGACCATATACATTAACAATCTCAACGAGAAAATCAAACTGGAAGGTATTCTTGAGGGGAGGGGGGATGGAGAAACGTCTTTAATTCTATGAAACATGTCATGATTATTTTTATTGTTTACTCCTTGGTGGAGCAGAACTGAAGAAGTCGCTGAACGCCGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGTTGGCTTTCAAGACATTGAAGCACAAGGGACAGGCTTGGGTTGTGTTCGAAGAAGTATCTTCTGCAACTAATGCGCTTAGACAGATGCAGGGTTTCCCTTTCTATGATAAGCCTATGGTAATGTGCTTGCTTGCGTTTCCAATTTCGAGAATTCTAATTTCCTTTTGTTGAAATCAAGGTGAAGATGAAGCCTAGACTTATTAAATCTTGTTGTAAAAAGATGGGTATCATTCATATGAGCACTTATACTAATTAAAGCCATGGTGGCGAATAAGAAAGTGCTGATATATTCTTCTGAGCAACGAAATGAGAATTGTGTTTGGATTATATTGTATCTTATCGTAGACAGTTGTGATTTACTTACACATGACAGTTAAATAATTTGGTTTCGCTTATTATTGCCTAACTGATGGTCTGGTTCTACATATACAATAAATTTTCACAGCTGATATCATTCCGGAGAGGTTAATGAAAAGCTATTGTTTGAATGATCAAGCATGTAATAGAATATGCCGTGAGCAGTTGATCTTGAAGTGTTTACTTCTTAAATATATCACATTGCAGGCGTTTGAATTTGCTTCATCTAAGCTCTATGACATTAGTTCTTAATATTTTGACACACGTCAAGTGGTTGACAAACATAGCTTCTGCAGATCTTTTGAAAGTTCTATATCTGTTGAGCATTTTTTGTTCGTAGATCTGGTGGCTAATATCCATATTATCTTTGCATTTATGAAAATGTTTTGTAGGCTATTTATATTTTACCATGGGATAAACTGCAGGCAACTTTATATATAATTTATTTCTCTGTTCTATTATTCATCTTTTGTTAGCTGGACCAATTTTTTTTGTGGGAGTATGGTGTAATATGAAGCTGAGTGATGTTGCTTTGCAATCATGTAGAGAATACAATATGCAAAGACAAAATCAGATATAATTGCGAAGTCTGATGGTACATTTGTTCCTCGGGAGAAACGAAAGAGGCATGAGGAAAAGGGTATAGTTTGTCTTTATTTCTATTTGACAGTTCAATTTCGAATCTGAATGAACAGTTTGGTACATGAAGATTTAATTCAATATTTGATCTGATATTTGATTGTTGATTTGTACTTTATTTGGTTTTATGTCTTATTGGTGTCAATGTGAAACAGTTCTTTACTAGCTTTTAAGTTTTACTTTATTTCTTTTACGTACTGCAGAAGAGTAATGTTCAATTACTGCAAAAGAAATTATTGAAAACCAGCGTTTTTTGTGGAAAAAATTGATAGGAATGCTATTAGACTATTATTTATTAGTTATTTTAGTCATTAGTTAGGAGAGTTCGTTATGGATTTTGGTTATAAATAAAGGTTCGAGGAATGAGGAAGGCAAGTAATATTTTAGTGAGTGATTTAGGGCTTATCAAGAGAAAGTGGGTCCAACTTCCAAGTACCTCGAACACTTAGTTTATCTTGTAATTCTGTTCGCTTGATGCAGAGAAAAATGTTGTCTTATTATTTATGTAGTGGTATTTGATCAAGATTTATCCATTCTCTTGATGTGGCAGGGAGGAAGAAGAAAGAGCACCATGATGCTAATCAAGCTGGGATGGGTCTGAATCCTGCTTTCGCTGGAGCATATGGTGCAACAGCGGTAAGTATCTCTATTTAATTCCTAAACATTAGTCTTTATGATATTCTATAAATTTGTATTCCATTGCGTGGTGGTTTTCCATGTTATTTCCATCTCTAACTTCAGATTTGAGCCTTAGATACCGTAGCTTGATTCTCCAACGAAGTCGGTTAAGATGTTATGTGTCCATCTCTTGTTAAAAAATGTATTCCAAGTGTTTCATCGACATGATTGTAAATGTAAACTATAAGATCGTAAGAACAAGAGTAGTGCGATATAATAAGAGGCAGAACTTCAGTTCCCGAGGCTAATTTTGCTTCTTAAGAATGATGCTCTCTCATCCTTTCTCATTTCTCACTCATTTCACTAATCTATCTGTATGGTACTCTACAAAATAGGAAGCACTTCATTCATTCTTTTAATCCCTCCCAGGTAGCAAGTCCATCGTCAATTTTAGTTATTCATTTGGATTTTATCTGCCTTTTTAGTTTCTTGCACAGAGAGTGAAGCATATATATTGGGGAAAAAAACGTATATTGGGGTTTATTTGCATTTATTACTTTGGTCATTTCATATATCATAATATCATGATTGTTGAAACCCTTTGCCATTATTCAACGCTCTAATTTCTGGGACTTGGTGGGTGGTGTCTGCATGATTGGGTGTACTCTCGTCTCTTGTATACCTTTTATCTATTGATGGAGCGCTTTTAAGACGGCACATCTTTGCTGACTCTCATCATATGAATAATTTGGTACTGAATCATGTTGATTTATTGGAAATTATATATTGCTAACATACACTCTCTCTTTCGTTTGCCTCTTCTGAGAATGGTGCAGCACTCTCAAGTACCTTATTCAGGCGGAGTTATGGTGCCAGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTGTACAAAATCTTCCCCACGAGACGACTCCAATGATGCTACAAATGCTTTTCTGTCAATATCCTGGTTTCAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAATACGGTGATGAGGTACAATCAACAGTTGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCGCAAAATTCGATGTTGATAACCTATGCGAAGAAATAGGATAGTGAATCTTGGTCTTCACTATATGGAAAGCCACCTGCTATTAATCGATGCTTAGGACAGGAGATTGTTTGTAAAATACTGTCATCTCGTACTTGCTGGAAATTCTACTCCACCGTGACCTAATTGATACAATCAGATCAGTTCTCTTAAGCAGGAATAGAAGAGATCTCAGATCCCGGTTGCCATGATTATCCTTGAACTCATAGTAAAGTTTGATTTTCACATCACATTTTGTTCTCATTTTCATAGTGTAGTATTTCCTTCTAATTATGCTGTAAAATAGACTAAAGGCTTTTATAACTATGAGATTAAAGAGCTGATGATGTTTGAGACCTAATTTGCTAGGCTTTATTTTACTGAGCAGCAAGTTTTACAGGATACAACAATTCCACAGTGCAAGAAAAATGAGATGCTGCTGTAGTGTTGAGGGAGATATCCCAGGAAGAACAGCTTTATTCTTGAACTGAACTTTGTCTGATATGTCGATTACTTGTACGAGATAGCAAATTTTGTCTGATATGACGATTACTTGTTCGAACAAATTAGTTAGTTTTGATGTCATATGGTGAAGAAAAGTTGAAAACATGTACCGGAGGCTGCTGTTGGGGCCTCCTTCCGTTGGTATATTGCTATAAATTAAGTCTAAATGCGATGATAAATTTGGTATTTTGCTATAAAGAAATTCCTGTTATTAGTATTCAAAAGAAAAGTACCAAAAGTCATAACAATGAAAAACTGTTCAACTATGAACTATATCCACAACAGGATTTTGCTTTCTATGACCTTTATTATTCAAAGTCTTTGAAAAAAGGACAAGTTGGATACAACTCAAAATGCAAGAATCAAAAGTTTAAGTCCCAATCAACAGAAGTTACAGCAATGGAGAATCGAAGTCCGAACCGAAGTCCCAATTCAGTTCAGAATTTCTTGATAAAGTCATGGATTTGAGTACTGATTTCATGTGGCCTTTCTTGATTGATGAAGTGGGCAGTATCGTCCATTACAACTACTTCCTCAAGAAACGGCACATCCCTCTTGAATCCACCATTGTGAATATATTCCTTGGCTTCTGGAAAATGGTAGGTCAGATCCAAATCCCCGACGATGAACTTCACCGGCACTCGGACCTGTGTTTTCGTCCATGATGCAGTCAGCTCCCACGTTCTGCAACAAACATTAGAGTTCCGCACCTCTTCATACATACATACATACATCCAAACAACCATTTACAATAGTAGTTGATCAATAGTATGGAACAATTATGCTAAAGTTATAACAGAATAATATGAATGGTTTTATGAGATGTAACTACAACGTACAAGTCGAAAGCTCGATAGTAGTTCAATCCTCCAGTGAAGCCTGTGTGCTTAAATTTGGTAGCAAAATAGTTGATATCTTCCTCTGTCAGCCAAGAAGGAAGGTTTTGTGGAGGTGGGATAGAACGAATTCCATCCTCTTTAGGCAATCTTGGAGGATTTGGACTTCTACCACAGAGAAATCTCTTGAACAAATCAGTTGTGTCAATGGAGGCAAACTGTTCTTCAGCCTCTCCTGGAACCTGTTTCAAATAATTAATCTATACAATTAGTTTTGTATTGGGACACCATAAATACAAGTATGAATTGTTGGACAAAAATGATATTTAAGAACTGAAAAAACTAGCAAACTGATTGCATCTCAACTAGATATAGTATACCAATTGTATGCAACAATAATGTTCAAACTCAAAACTAAGCCAAA

mRNA sequence

GACCGGCCAGACCTCTGCGAGCGGAGTGGCATTGCACGTATCGGTCAGTGACGTCCTTGCTCTTTCAACATTCTTCGCATTTCCACTTGAGCATTTCTATTCGGCGGACAAAGGTCAAAGAAATGGCGGAGGTCAACAGCACTGGCAACGAAGTTCCTCCGAACATGACCATATACATTAACAATCTCAACGAGAAAATCAAACTGGAAGAACTGAAGAAGTCGCTGAACGCCGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGTTGGCTTTCAAGACATTGAAGCACAAGGGACAGGCTTGGGTTGTGTTCGAAGAAGTATCTTCTGCAACTAATGCGCTTAGACAGATGCAGGGTTTCCCTTTCTATGATAAGCCTATGAGAATACAATATGCAAAGACAAAATCAGATATAATTGCGAAGTCTGATGGTACATTTGTTCCTCGGGAGAAACGAAAGAGGCATGAGGAAAAGGGGAGGAAGAAGAAAGAGCACCATGATGCTAATCAAGCTGGGATGGGTCTGAATCCTGCTTTCGCTGGAGCATATGGTGCAACAGCGCACTCTCAAGTACCTTATTCAGGCGGAGTTATGGTGCCAGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTGTACAAAATCTTCCCCACGAGACGACTCCAATGATGCTACAAATGCTTTTCTGTCAATATCCTGGTTTCAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAATACGGTGATGAGGTACAATCAACAGTTGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCGCAAAATTCGATGTTGATAACCTATGCGAAGAAATAGGATAGTGAATCTTGGTCTTCACTATATGGAAAGCCACCTGCTATTAATCGATGCTTAGGACAGGAGATTGTTTGTAAAATACTGTCATCTCGTACTTGCTGGAAATTCTACTCCACCGTGACCTAATTGATACAATCAGATCAGTTCTCTTAAGCAGGAATAGAAGAGATCTCAGATCCCGGTTGCCATGATTATCCTTGAACTCATAGTAAAGTTTGATTTTCACATCACATTTTGTTCTCATTTTCATAGTGTAGTATTTCCTTCTAATTATGCTGTAAAATAGACTAAAGGCTTTTATAACTATGAGATTAAAGAGCTGATGATGTTTGAGACCTAATTTGCTAGGCTTTATTTTACTGAGCAGCAAGTTTTACAGGATACAACAATTCCACAGTGCAAGAAAAATGAGATGCTGCTGTAGTGTTGAGGGAGATATCCCAGGAAGAACAGCTTTATTCTTGAACTGAACTTTGTCTGATATGTCGATTACTTGTACGAGATAGCAAATTTTGTCTGATATGACGATTACTTGTTCGAACAAATTAGTTAGTTTTGATGTCATATGGTGAAGAAAAGTTGAAAACATGTACCGGAGGCTGCTGTTGGGGCCTCCTTCCGTTGGTATATTGCTATAAATTAAGTCTAAATGCGATGATAAATTTGGTATTTTGCTATAAAGAAATTCCTGTTATTAGTATTCAAAAGAAAAGTACCAAAAGTCATAACAATGAAAAACTGTTCAACTATGAACTATATCCACAACAGGATTTTGCTTTCTATGACCTTTATTATTCAAAGTCTTTGAAAAAAGGACAAGTTGGATACAACTCAAAATGCAAGAATCAAAAGTTTAAGTCCCAATCAACAGAAGTTACAGCAATGGAGAATCGAAGTCCGAACCGAAGTCCCAATTCAGTTCAGAATTTCTTGATAAAGTCATGGATTTGAGTACTGATTTCATGTGGCCTTTCTTGATTGATGAAGTGGGCAGTATCGTCCATTACAACTACTTCCTCAAGAAACGGCACATCCCTCTTGAATCCACCATTGTGAATATATTCCTTGGCTTCTGGAAAATGGTAGGTCAGATCCAAATCCCCGACGATGAACTTCACCGGCACTCGGACCTGTGTTTTCGTCCATGATGCAGTCAGCTCCCACGTTCTGCAACAAACATTAGAGTTCCGCACCTCTTCATACATACATACATACATCCAAACAACCATTTACAATAGTAGTTGATCAATAGTATGGAACAATTATGCTAAAGTTATAACAGAATAATATGAATGGTTTTATGAGATGTAACTACAACGTACAAGTCGAAAGCTCGATAGTAGTTCAATCCTCCAGTGAAGCCTGTGTGCTTAAATTTGGTAGCAAAATAGTTGATATCTTCCTCTGTCAGCCAAGAAGGAAGGTTTTGTGGAGGTGGGATAGAACGAATTCCATCCTCTTTAGGCAATCTTGGAGGATTTGGACTTCTACCACAGAGAAATCTCTTGAACAAATCAGTTGTGTCAATGGAGGCAAACTGTTCTTCAGCCTCTCCTGGAACCTGTTTCAAATAATTAATCTATACAATTAGTTTTGTATTGGGACACCATAAATACAAGTATGAATTGTTGGACAAAAATGATATTTAAGAACTGAAAAAACTAGCAAACTGATTGCATCTCAACTAGATATAGTATACCAATTGTATGCAACAATAATGTTCAAACTCAAAACTAAGCCAAA

Coding sequence (CDS)

ATGGCGGAGGTCAACAGCACTGGCAACGAAGTTCCTCCGAACATGACCATATACATTAACAATCTCAACGAGAAAATCAAACTGGAAGAACTGAAGAAGTCGCTGAACGCCGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGTTGGCTTTCAAGACATTGAAGCACAAGGGACAGGCTTGGGTTGTGTTCGAAGAAGTATCTTCTGCAACTAATGCGCTTAGACAGATGCAGGGTTTCCCTTTCTATGATAAGCCTATGAGAATACAATATGCAAAGACAAAATCAGATATAATTGCGAAGTCTGATGGTACATTTGTTCCTCGGGAGAAACGAAAGAGGCATGAGGAAAAGGGGAGGAAGAAGAAAGAGCACCATGATGCTAATCAAGCTGGGATGGGTCTGAATCCTGCTTTCGCTGGAGCATATGGTGCAACAGCGCACTCTCAAGTACCTTATTCAGGCGGAGTTATGGTGCCAGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTGTACAAAATCTTCCCCACGAGACGACTCCAATGATGCTACAAATGCTTTTCTGTCAATATCCTGGTTTCAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAATACGGTGATGAGGTACAATCAACAGTTGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCGCAAAATTCGATGTTGATAACCTATGCGAAGAAATAG

Protein sequence

MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK
Homology
[Close]
BLAST of CcUC10G196110 vs. NCBI nr
Match: XP_038906378.1 (U1 small nuclear ribonucleoprotein A [Benincasa hispida])

HSP 1 Score: 474.6 bits (1220), Expect = 5.3e-130
Identity = 240/242 (99.17%), Postives = 240/242 (99.17%), Query Frame = 0 

Query: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKE HDANQAGMGLNPAFAGAYGAT HSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATVHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CcUC10G196110 vs. NCBI nr
Match: XP_008454331.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 472.6 bits (1215), Expect = 2.0e-129
Identity = 239/242 (98.76%), Postives = 240/242 (99.17%), Query Frame = 0 

Query: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKE HDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CcUC10G196110 vs. NCBI nr
Match: XP_022948748.1 (U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U1 small nuclear ribonucleoprotein A-like [Cucurbita maxima] >XP_023524504.1 U1 small nuclear ribonucleoprotein A [Cucurbita pepo subsp. pepo] >KAG7036660.1 U1 small nuclear ribonucleoprotein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 469.2 bits (1206), Expect = 2.2e-128
Identity = 234/242 (96.69%), Postives = 239/242 (98.76%), Query Frame = 0 

Query: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKE HDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CcUC10G196110 vs. NCBI nr
Match: XP_011652939.1 (U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical protein Csa_014424 [Cucumis sativus])

HSP 1 Score: 468.8 bits (1205), Expect = 2.9e-128
Identity = 237/242 (97.93%), Postives = 239/242 (98.76%), Query Frame = 0 

Query: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 121 KKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKE HDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CcUC10G196110 vs. NCBI nr
Match: KAA0044384.1 (U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 468.0 bits (1203), Expect = 4.9e-128
Identity = 239/243 (98.35%), Postives = 240/243 (98.77%), Query Frame = 0 

Query: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLE-ELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           MAEV +TGNEVPPNMTIYINNLNEKIKLE ELKKSLNAVFSQFGKILEVLAFKTLKHKGQ
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEAELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120
           AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG
Sbjct: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120

Query: 121 RKKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET 180
           RKKKE HDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET
Sbjct: 121 RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET 180

Query: 181 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITY 240
           TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITY
Sbjct: 181 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITY 240

Query: 241 AKK 243
           AKK
Sbjct: 241 AKK 243

[Close]
BLAST of CcUC10G196110 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.7e-97
Identity = 185/249 (74.30%), Postives = 209/249 (83.94%), Query Frame = 0 

Query: 1   MAEVN-STGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           M E N   G+EV PN TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120
           AWVVF+   SA+ A+ +M  FPFYDK MRIQYAKTKSD++AK+DGTFVPREKRKRHEEKG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 121 ---RKKKEHHDANQAGMGLNPAFAGAYGATAH-SQVPYSGGVM--VPEAPAPPNSILFVQ 180
              +KK +HHD+ Q GM +N A+ G YGA    SQVPY GG+   +PEAPAPPN+ILFVQ
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 181 NLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQN 240
           NLPHETTPM+LQMLFCQY GFKEVRM+EAKPGIAFVE+ DE+QSTVAMQ LQGFK+  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 242

Query: 241 SMLITYAKK 243
            MLITYAKK
Sbjct: 243 QMLITYAKK 250

[Close]
BLAST of CcUC10G196110 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.4e-93
Identity = 180/239 (75.31%), Postives = 205/239 (85.77%), Query Frame = 0 

Query: 9   NEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKK---KEH 128
           SAT AL+ MQ FPF++KPMRIQYAKTKSDIIAK+DGTFVPRE+RKR++EK  KK   ++H
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDANQAGMGLNPAFAGAYGATAHSQVPYSGG--VMVPEAPAPPNSILFVQNLPHETTPMM 188
           HD +Q G+G+N A+ G YGA   SQ+P++G   VM+PE    PN+ILFVQNLPHETTPMM
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]
BLAST of CcUC10G196110 vs. ExPASy Swiss-Prot
Match: Q0DKM4 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.4e-93
Identity = 180/239 (75.31%), Postives = 205/239 (85.77%), Query Frame = 0 

Query: 9   NEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKK---KEH 128
           SAT AL+ MQ FPF++KPMRIQYAKTKSDIIAK+DGTFVPRE+RKR++EK  KK   ++H
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDANQAGMGLNPAFAGAYGATAHSQVPYSGG--VMVPEAPAPPNSILFVQNLPHETTPMM 188
           HD +Q G+G+N A+ G YGA   SQ+P++G   VM+PE    PN+ILFVQNLPHETTPMM
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]
BLAST of CcUC10G196110 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.4e-72
Identity = 138/233 (59.23%), Postives = 184/233 (78.97%), Query Frame = 0 

Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEHHDAN 129
           A +A+RQMQ FPFYDKPMR+QYAK KSD +AK++GTFVP++K+++ EEK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           +      P+   A G +A++ VP        +   PPN+ILF+QNLPHETT MMLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM++AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of CcUC10G196110 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.7e-70
Identity = 135/233 (57.94%), Postives = 178/233 (76.39%), Query Frame = 0 

Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEHHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           Q  M          GAT  + +P        +   PPN+ILF+ NLP ET  MMLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of CcUC10G196110 vs. ExPASy TrEMBL
Match: A0A5D3E0R3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001140 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 9.7e-130
Identity = 239/242 (98.76%), Postives = 240/242 (99.17%), Query Frame = 0 

Query: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKE HDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CcUC10G196110 vs. ExPASy TrEMBL
Match: A0A1S3BYG3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 9.7e-130
Identity = 239/242 (98.76%), Postives = 240/242 (99.17%), Query Frame = 0 

Query: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKE HDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CcUC10G196110 vs. ExPASy TrEMBL
Match: A0A6J1K6I0 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC111492748 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.1e-128
Identity = 234/242 (96.69%), Postives = 239/242 (98.76%), Query Frame = 0 

Query: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKE HDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CcUC10G196110 vs. ExPASy TrEMBL
Match: A0A6J1GA71 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC111452325 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.1e-128
Identity = 234/242 (96.69%), Postives = 239/242 (98.76%), Query Frame = 0 

Query: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKE HDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CcUC10G196110 vs. ExPASy TrEMBL
Match: A0A0A0KWK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128
Identity = 237/242 (97.93%), Postives = 239/242 (98.76%), Query Frame = 0 

Query: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 121 KKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKE HDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CcUC10G196110 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 356.3 bits (913), Expect = 1.9e-98
Identity = 185/249 (74.30%), Postives = 209/249 (83.94%), Query Frame = 0 

Query: 1   MAEVN-STGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           M E N   G+EV PN TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120
           AWVVF+   SA+ A+ +M  FPFYDK MRIQYAKTKSD++AK+DGTFVPREKRKRHEEKG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 121 ---RKKKEHHDANQAGMGLNPAFAGAYGATAH-SQVPYSGGVM--VPEAPAPPNSILFVQ 180
              +KK +HHD+ Q GM +N A+ G YGA    SQVPY GG+   +PEAPAPPN+ILFVQ
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 181 NLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQN 240
           NLPHETTPM+LQMLFCQY GFKEVRM+EAKPGIAFVE+ DE+QSTVAMQ LQGFK+  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 242

Query: 241 SMLITYAKK 243
            MLITYAKK
Sbjct: 243 QMLITYAKK 250

[Close]
BLAST of CcUC10G196110 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 274.2 bits (700), Expect = 9.7e-74
Identity = 138/233 (59.23%), Postives = 184/233 (78.97%), Query Frame = 0 

Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEHHDAN 129
           A +A+RQMQ FPFYDKPMR+QYAK KSD +AK++GTFVP++K+++ EEK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           +      P+   A G +A++ VP        +   PPN+ILF+QNLPHETT MMLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM++AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of CcUC10G196110 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 267.3 bits (682), Expect = 1.2e-71
Identity = 135/233 (57.94%), Postives = 178/233 (76.39%), Query Frame = 0 

Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEHHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           Q  M          GAT  + +P        +   PPN+ILF+ NLP ET  MMLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of CcUC10G196110 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 264.6 bits (675), Expect = 7.7e-71
Identity = 137/238 (57.56%), Postives = 180/238 (75.63%), Query Frame = 0 

Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGRKKKEHHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPA-----PPNSILFVQNLPHETTPMML 189
           Q  M          GAT  + +P       P  P+     PPN+ILF+ NLP ET  MML
Sbjct: 125 QPSM--------PNGATTQNGMP------PPFQPSGQDTMPPNNILFIHNLPIETNSMML 184

Query: 190 QMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           Q+LF QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]
BLAST of CcUC10G196110 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.8e-59
Identity = 115/202 (56.93%), Postives = 152/202 (75.25%), Query Frame = 0 

Query: 41  QFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIA 100
           +FG++L+V+A KT K +GQAWVVF EV++A+NA+RQMQ FPFYDKPMRIQYAK+KSD + 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 101 KSDGTFVPREKRKRHEEKGRKKKEHHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVP 160
           K++G+FVP+EK+ + EEK  +K+   +  Q  M          GAT  + +P        
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSM--------PNGATTQNGMPVPPFQPSG 126

Query: 161 EAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVA 220
           +   PPN+ILF+ NLP ET  MMLQ+LF QYPGFKE+RM+EAKPGIAFVEY D+VQS++A
Sbjct: 127 QDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMA 186

Query: 221 MQALQGFKMNPQNSMLITYAKK 243
           MQALQGFK+ PQN M++++AKK
Sbjct: 187 MQALQGFKITPQNPMVVSFAKK 200

The following BLAST results are available for this feature:
BLAST of CcUC10G196110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906378.15.3e-13099.17U1 small nuclear ribonucleoprotein A [Benincasa hispida][more]
XP_008454331.12.0e-12998.76PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 sm... [more]
XP_022948748.12.2e-12896.69U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U... [more]
XP_011652939.12.9e-12897.93U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical ... [more]
KAA0044384.14.9e-12898.35U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa][more]
BLAST of CcUC10G196110 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q392442.7e-9774.30U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1... [more]
A2Y0J71.4e-9375.31U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O... [more]
Q0DKM41.4e-9375.31U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
O229221.4e-7259.23U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ... [more]
Q8H1S61.7e-7057.94U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g... [more]
BLAST of CcUC10G196110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E0R39.7e-13098.76U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3BYG39.7e-13098.76U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=... [more]
A0A6J1K6I01.1e-12896.69U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1GA711.1e-12896.69U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A0A0KWK41.4e-12897.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1[more]
BLAST of CcUC10G196110 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47580.11.9e-9874.30spliceosomal protein U1A [more]
AT2G30260.19.7e-7459.23U2 small nuclear ribonucleoprotein B [more]
AT1G06960.11.2e-7157.94RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G06960.27.7e-7157.56RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G06960.31.8e-5956.93RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 16..90
e-value: 1.4E-13
score: 61.1
coord: 169..238
e-value: 2.0E-9
score: 47.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 170..230
e-value: 3.0E-12
score: 46.2
coord: 17..87
e-value: 1.6E-10
score: 40.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 15..94
score: 14.538761
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 168..242
score: 12.099839
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 8..115
e-value: 1.2E-30
score: 107.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 157..242
e-value: 3.0E-20
score: 74.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..132
NoneNo IPR availablePANTHERPTHR10501:SF46U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 6..242
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 6..242
NoneNo IPR availableCDDcd12247RRM2_U1A_likecoord: 166..238
e-value: 3.93321E-38
score: 125.759
NoneNo IPR availableCDDcd12246RRM1_U1A_likecoord: 16..93
e-value: 3.5356E-51
score: 159.231
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 12..232

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G196110.1CcUC10G196110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005685 U1 snRNP
molecular_function GO:0030619 U1 snRNA binding
molecular_function GO:0003676 nucleic acid binding