CcUC10G195560 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G195560
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description40S ribosomal protein S29
LocationCicolChr10: 20847079 .. 20849258 (-)
RNA-Seq ExpressionCcUC10G195560
SyntenyCcUC10G195560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGGCTCTCCGATGAATCCGAGCCGCTGTTTTCGCCATATCCTCCTCCTTTGCTTGACCATAGCTTTGTGAAAAGCTTCTTTGACTTGAGCAATCCTTTCATTTTACTAAGAGCTGCTTTGTCAATTCCATTTTTACCATCTCCATTCCTCTCATTACTTCCTTTACCAGTAGCAAGCCTCAAGGAAGCTAGCTCCCCTTTGAGGGCCTTGAGCTCCTCAGCCATGGCAACAGCATCCCAATCTTCCTCGGGATTCGTCGTGGCTGATCTTGAGCTGCTGTGAGACCCACTCGTTAGATCCTTGATGCTTTTATGTAGGTCGGGAGTGCTGCTGCCTGATGATGCTGAGGCCCTGACTTGCTCAAAAAACAATACCTGCACAACCATACGTAGAGGGAGCCGTTCATTTTGTACAGCATGAATGCACGCATCAGCGGATAGTTTCTTGCAGTCTATCAGTTTGCAGATTCTCTTCTTATCACTCTTGCCAATCCCTGGATGTTCCTGTAAATCAAGTCTAATTGAGTGCATATATGGTTTGAGCAAGAGGGAACGACCAGCAGGTCGGGAAAATAAACATAACTTATCATGTGCCTATGACTATGTACTAAAATAACGCCGAAAACTATGAACAATTTCAAGTTAAGTTGAGAAACTGTTACCTTTAGATACATGTCTATGGCTCGATAGAGCCCGTCATGTGAAGGCCGAGCGATGCAAGATACCATCTCTGCAAGATCAATGAACTTTACTGATGAAAGGTTGGGATCTTTTGCAACTTCAGCAAGGTAACCATCAATCAATTTTGCCACCATCAACTTAGTAGCATCCGATAAAATCCCTGGCCCTCTTGGCTCCTGAAGCTCATTTCCCTCTTCAAGTGACTCGATTTCGCTACTATGATCTTGTAACAGAAACACCTCCACCATTTTCTGTACAGCATTAACATCATAAGTCGTAGCTTCACCTTCCGGTGCTCGCAGCAAAAGATCGCTCACTGTAGCCTCCTCTAGCTGCTGTCCCATTCGTCGAACGAGTTCTTCTTTGGTCTCATCTCCAGATGCTAGGAAAATGGACGCTTTCAGCAATTTGGACAAGAAACTACTGGAAACACTGCCTTTCTCAGCAGGTAACAGCCAGACAATTGTCGACACTGCCGACTGATACTTCAGTGGATCCCCACATTGAAGCACACCTTTGCTAAAGCCTGGAAGATAACGGTAAGCATAAGCTTTCAGTGCTTCTCCAATCACATCATTAGGGACTATTCCTTTGCTTTTTATACTCGTTATAACACGCTTATATACATCAATTTCTAGCTCACAAAGATCCTCAACCCACCAGTCCTTCGGCACACTACGATTCCTGACGCCATTCCAGTTGGGATTGTTCCCATTTTCCTCAGGTAGTTTCTTGCGGTTATATGTGTAAGACCAGTCAACTTTAGAAATATCAGCAGAGGCCTTCACAGCAATAGATTCTAAGCAATTGCTTACTAATTTCAGTTCCTCAGATAATGGCATTAACGCCTTTGTGGACTGAAGAACAATGATTGAATCCTTCCAGCTACGAAAGATGCTTGAACTAAGGAAAACGTCGATTTTGTAGGCGAGGTTTCCCTTTTCAACTGTCTCATGCATTCCTAAGTATTCAGCAGCACAACGGGCTGCAACTACGTTATAGGCATTAAGAGTAACAGTCATGCCGTAACAGAATTTGGCACATATCTCAAATGCTGCAGAACCACCCGGGATCTCTGGAATGTATATTTCATCATTGTGCTCCCCAGTGGCAGCTGTGACCAACTTCTGCAAGTGAGCACTCTTTGACAGAAGGGGAAACTGCAAAACAGCAGGTACTACCAATCTATCAGTACAACGAACCATATGCAATGAATAACTATGCGGTATCATAGATGTCGGGATGCATAAAAGCAGCCAGCTTTCAAAAGTGAATGTAGTTAAACTAAGTAAAGTTTGTTGTGCCTCATTTCTGTTACTGGACTAGCACTGAACTTTGTGCATATATCAGTTTTGGTATGGACGTAAGGATAATCATTATCACAATAATGTATTATATTAGATGTTAGCCTGCGAACTTTTGGGTGTTCGCTTTCGTGTAGGAGAGATCCCATTAAGCAGTCAATGCACCAAGAAAGATTATTTGATTCCAAGATCT

mRNA sequence

CCAAGGCTCTCCGATGAATCCGAGCCGCTGTTTTCGCCATATCCTCCTCCTTTGCTTGACCATAGCTTTGTGAAAAGCTTCTTTGACTTGAGCAATCCTTTCATTTTACTAAGAGCTGCTTTGTCAATTCCATTTTTACCATCTCCATTCCTCTCATTACTTCCTTTACCAGTAGCAAGCCTCAAGGAAGCTAGCTCCCCTTTGAGGGCCTTGAGCTCCTCAGCCATGGCAACAGCATCCCAATCTTCCTCGGGATTCGTCGTGGCTGATCTTGAGCTGCTGTCGGGAGTGCTGCTGCCTGATGATGCTGAGGCCCTGACTTGCTCAAAAAACAATACCTGCACAACCATACTCGTAGCTTCACCTTCCGGTGCTCGCAGCAAAAGATCGCTCACTGTAGCCTCCTCTAGCTGCTGTCCCATTCGTCGAACGAGTTCTTCTTTGGTCTCATCTCCAGATGCTAGGAAAATGGACGCTTTCAGCAATTTGGACAAGAAACTACTGGAAACACTGCCTTTCTCAGCAGACAATTGTCGACACTGCCGACTGATACTTCAGTGGATCCCCACATTGAAGCACACCTTTGCTAAAGCCTGGAAGATAACGCTCACAAAGATCCTCAACCCACCAGTCCTTCGGCACACTACGATTCCTGACGCCATTCCAGTTGGGATTGTTCCCATTTTCCTCAGCAGCACAACGGGCTGCAACTACGTTATAGGCATTAAGAGTAACAGTCATGCCGTAACAGAATTTGGCACATATCTCAAATGCTGCAGAACCACCCGGGATCTCTGGAATATGTTAGCCTGCGAACTTTTGGGTGTTCGCTTTCGTGTAGGAGAGATCCCATTAAGCAGTCAATGCACCAAGAAAGATTATTTGATTCCAAGATCT

Coding sequence (CDS)

CCAAGGCTCTCCGATGAATCCGAGCCGCTGTTTTCGCCATATCCTCCTCCTTTGCTTGACCATAGCTTTGTGAAAAGCTTCTTTGACTTGAGCAATCCTTTCATTTTACTAAGAGCTGCTTTGTCAATTCCATTTTTACCATCTCCATTCCTCTCATTACTTCCTTTACCAGTAGCAAGCCTCAAGGAAGCTAGCTCCCCTTTGAGGGCCTTGAGCTCCTCAGCCATGGCAACAGCATCCCAATCTTCCTCGGGATTCGTCGTGGCTGATCTTGAGCTGCTGTCGGGAGTGCTGCTGCCTGATGATGCTGAGGCCCTGACTTGCTCAAAAAACAATACCTGCACAACCATACTCGTAGCTTCACCTTCCGGTGCTCGCAGCAAAAGATCGCTCACTGTAGCCTCCTCTAGCTGCTGTCCCATTCGTCGAACGAGTTCTTCTTTGGTCTCATCTCCAGATGCTAGGAAAATGGACGCTTTCAGCAATTTGGACAAGAAACTACTGGAAACACTGCCTTTCTCAGCAGACAATTGTCGACACTGCCGACTGATACTTCAGTGGATCCCCACATTGAAGCACACCTTTGCTAAAGCCTGGAAGATAACGCTCACAAAGATCCTCAACCCACCAGTCCTTCGGCACACTACGATTCCTGACGCCATTCCAGTTGGGATTGTTCCCATTTTCCTCAGCAGCACAACGGGCTGCAACTACGTTATAGGCATTAAGAGTAACAGTCATGCCGTAACAGAATTTGGCACATATCTCAAATGCTGCAGAACCACCCGGGATCTCTGGAATATGTTAGCCTGCGAACTTTTGGGTGTTCGCTTTCGTGTAGGAGAGATCCCATTAAGCAGTCAATGCACCAAGAAAGATTATTTGATTCCAAGATCT

Protein sequence

PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVASLKEASSPLRALSSSAMATASQSSSGFVVADLELLSGVLLPDDAEALTCSKNNTCTTILVASPSGARSKRSLTVASSSCCPIRRTSSSLVSSPDARKMDAFSNLDKKLLETLPFSADNCRHCRLILQWIPTLKHTFAKAWKITLTKILNPPVLRHTTIPDAIPVGIVPIFLSSTTGCNYVIGIKSNSHAVTEFGTYLKCCRTTRDLWNMLACELLGVRFRVGEIPLSSQCTKKDYLIPRS
Homology
[Close]
BLAST of CcUC10G195560 vs. NCBI nr
Match: KAG7014949.1 (40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.3 bits (469), Expect = 7.9e-43
Identity = 106/130 (81.54%), Postives = 110/130 (84.62%), Query Frame = 0 

Query: 1   PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVAS 60
           PRLSDESE LFSPYPPPLLDHS VKSFFD S PFILLRAALSIPFLP+PFLSL PLP+A+
Sbjct: 58  PRLSDESELLFSPYPPPLLDHSLVKSFFDFSMPFILLRAALSIPFLPTPFLSLPPLPLAT 117

Query: 61  LKEASSPLRALSSSAMATASQSSSGFVVADLEL-------------LSGVLLPDDAEALT 118
           LKEASSPLRA SSSAMATASQSSSGFVVADLEL              SGVLLPDDA+ALT
Sbjct: 118 LKEASSPLRAFSSSAMATASQSSSGFVVADLELPCDPLVRSLIPLGRSGVLLPDDADALT 177

[Close]
BLAST of CcUC10G195560 vs. NCBI nr
Match: GER36904.1 (40S ribosomal protein S29 [Striga asiatica])

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-06
Identity = 59/125 (47.20%), Postives = 65/125 (52.00%), Query Frame = 0 

Query: 1   PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVAS 60
           P L  ES+PLFSP P  +LD    K   D+  P       L IP  P       PL +  
Sbjct: 42  PHLDHESDPLFSPLPDQILD----KILLDIIKPL-----TLPIPARPKSLSFESPL-LPR 101

Query: 61  LKEASSPLRALSSSAMATASQSSSGFVVADLEL---------LSGVLLPDD---AEALTC 114
            K ASSPLRA SSSA ATASQSSS FVV + EL          SGV LP+D   A   TC
Sbjct: 102 RKAASSPLRARSSSAEATASQSSSVFVVVERELPFRSLMAFGRSGVELPEDEAAAAVRTC 156

[Close]
BLAST of CcUC10G195560 vs. ExPASy TrEMBL
Match: A0A5A7PVV7 (40S ribosomal protein S29 OS=Striga asiatica OX=4170 GN=STAS_13282 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 59/125 (47.20%), Postives = 65/125 (52.00%), Query Frame = 0 

Query: 1   PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVAS 60
           P L  ES+PLFSP P  +LD    K   D+  P       L IP  P       PL +  
Sbjct: 42  PHLDHESDPLFSPLPDQILD----KILLDIIKPL-----TLPIPARPKSLSFESPL-LPR 101

Query: 61  LKEASSPLRALSSSAMATASQSSSGFVVADLEL---------LSGVLLPDD---AEALTC 114
            K ASSPLRA SSSA ATASQSSS FVV + EL          SGV LP+D   A   TC
Sbjct: 102 RKAASSPLRARSSSAEATASQSSSVFVVVERELPFRSLMAFGRSGVELPEDEAAAAVRTC 156

[Close]
BLAST of CcUC10G195560 vs. ExPASy TrEMBL
Match: A0A7C9B1R5 (Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-05
Identity = 52/98 (53.06%), Postives = 57/98 (58.16%), Query Frame = 0 

Query: 3  LSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFL-PSPFLSLLPLPVA-- 62
          LSD SEPLFSP    LLD SF  + FD+S P  L  AA S  F  PSPF+ L P  V   
Sbjct: 4  LSDVSEPLFSP-SLSLLDQSFENTLFDISRPLTLWAAAFSASFFEPSPFVLLSPPLVVPR 63

Query: 63 ----SLKEASSPLRALSSSAMATASQSSSGFVVADLEL 94
              SL+ ASSP RA SSS + T S SSS  VV D EL
Sbjct: 64 SGPPSLRLASSPFRARSSSVVGTPSHSSSVLVV-DREL 99

The following BLAST results are available for this feature:
BLAST of CcUC10G195560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014949.17.9e-4381.5440S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
GER36904.12.6e-0647.2040S ribosomal protein S29 [Striga asiatica][more]
BLAST of CcUC10G195560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC10G195560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7PVV71.3e-0647.2040S ribosomal protein S29 OS=Striga asiatica OX=4170 GN=STAS_13282 PE=4 SV=1[more]
A0A7C9B1R53.2e-0553.06Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
BLAST of CcUC10G195560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G195560.1CcUC10G195560.1mRNA