CcUC10G195500 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G195500
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr10: 20704410 .. 20704691 (+)
RNA-Seq ExpressionCcUC10G195500
SyntenyCcUC10G195500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGCCCAATAAAAACCATAAAAATAATAAGTTGGAAAATAAGAGAGACATGGAGATCAAAAACAAGGTAGCTTTGGTGGGTATGGTAGTTGTGATGGTGGTTATGGCTCAATCCGCCACTGCTGCCGTGGATGAGGGGATTCAGCTCCCGGCCGAAGGCGCAGCTAGTTATTACCATACGCCGCCGCCTCCGAGAGTATGTCCTGTTATGATATTGCCATGCAAAACTGACTCTGAATGTTCTCCATGCTACTGTGTTAATGGCTCCTGCATTTGA

mRNA sequence

ATGGGAAAGCCCAATAAAAACCATAAAAATAATAAGTTGGAAAATAAGAGAGACATGGAGATCAAAAACAAGGTAGCTTTGGTGGGTATGGTAGTTGTGATGGTGGTTATGGCTCAATCCGCCACTGCTGCCGTGGATGAGGGGATTCAGCTCCCGGCCGAAGGCGCAGCTAGTTATTACCATACGCCGCCGCCTCCGAGAGTATGTCCTGTTATGATATTGCCATGCAAAACTGACTCTGAATGTTCTCCATGCTACTGTGTTAATGGCTCCTGCATTTGA

Coding sequence (CDS)

ATGGGAAAGCCCAATAAAAACCATAAAAATAATAAGTTGGAAAATAAGAGAGACATGGAGATCAAAAACAAGGTAGCTTTGGTGGGTATGGTAGTTGTGATGGTGGTTATGGCTCAATCCGCCACTGCTGCCGTGGATGAGGGGATTCAGCTCCCGGCCGAAGGCGCAGCTAGTTATTACCATACGCCGCCGCCTCCGAGAGTATGTCCTGTTATGATATTGCCATGCAAAACTGACTCTGAATGTTCTCCATGCTACTGTGTTAATGGCTCCTGCATTTGA

Protein sequence

MGKPNKNHKNNKLENKRDMEIKNKVALVGMVVVMVVMAQSATAAVDEGIQLPAEGAASYYHTPPPPRVCPVMILPCKTDSECSPCYCVNGSCI
Homology
BLAST of CcUC10G195500 vs. NCBI nr
Match: KGN52766.1 (hypothetical protein Csa_015422 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-25
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 0

Query: 19 MEIKNKVALVGMVVVMVVMAQSA--TAAVDEGIQLPAEGAASYYHTPPPPRVCPVMILPC 78
          ME+KNKVALV MVVVMVVM +SA  TAA+DEGI+LP  G ASYY TPPPPRVCP+MILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 79 KTDSECSPCYCVNGSCI 94
          KTDSECSPCYC NGSCI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

BLAST of CcUC10G195500 vs. NCBI nr
Match: KAA0044341.1 (hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-09
Identity = 47/79 (59.49%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 19 MEIKNKVALVGMVVVMVVMAQSATA-AVDEGIQLP-AEGAASYYHTPPPPRVCPVMILPC 78
          ME+KNK ALV MVV MVVMAQS T    DE I+L   E  A         RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIELSGGENTA---------RVCPATILPC 60

Query: 79 KTDSECSPCYC--VNGSCI 94
          KTDSECSPC C   +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

BLAST of CcUC10G195500 vs. NCBI nr
Match: TYK29470.1 (hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 46/79 (58.23%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 19 MEIKNKVALVGMVVVMVVMAQSATA-AVDEGIQLP-AEGAASYYHTPPPPRVCPVMILPC 78
          ME+KNK ALV MVV MVVMAQS T    DE I++   E  A         RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIEVSGGENTA---------RVCPATILPC 60

Query: 79 KTDSECSPCYC--VNGSCI 94
          KTDSECSPC C   +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

BLAST of CcUC10G195500 vs. NCBI nr
Match: KGN52767.1 (hypothetical protein Csa_015168 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 7.4e-08
Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 19 MEIKNKVALVGMVVVMVVMAQSATA-AVDEGIQLP-AEGAASYYHTPPPPRVCPVMILPC 78
          ME+KNK ALV MVV MVVMAQS T    DE I+L   E  A         RVCP  +LPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIELSGGENTA---------RVCPATLLPC 60

Query: 79 KTDSECSPCYC--VNGSCI 94
          +TDSECSPC C   +G+C+
Sbjct: 61 ETDSECSPCICNVKSGACV 70

BLAST of CcUC10G195500 vs. ExPASy TrEMBL
Match: A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.5e-26
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 0

Query: 19 MEIKNKVALVGMVVVMVVMAQSA--TAAVDEGIQLPAEGAASYYHTPPPPRVCPVMILPC 78
          ME+KNKVALV MVVVMVVM +SA  TAA+DEGI+LP  G ASYY TPPPPRVCP+MILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 79 KTDSECSPCYCVNGSCI 94
          KTDSECSPCYC NGSCI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

BLAST of CcUC10G195500 vs. ExPASy TrEMBL
Match: A0A5A7TRY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00670 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-09
Identity = 47/79 (59.49%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 19 MEIKNKVALVGMVVVMVVMAQSATA-AVDEGIQLP-AEGAASYYHTPPPPRVCPVMILPC 78
          ME+KNK ALV MVV MVVMAQS T    DE I+L   E  A         RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIELSGGENTA---------RVCPATILPC 60

Query: 79 KTDSECSPCYC--VNGSCI 94
          KTDSECSPC C   +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

BLAST of CcUC10G195500 vs. ExPASy TrEMBL
Match: A0A5D3E1Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00670 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.6e-09
Identity = 46/79 (58.23%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 19 MEIKNKVALVGMVVVMVVMAQSATA-AVDEGIQLP-AEGAASYYHTPPPPRVCPVMILPC 78
          ME+KNK ALV MVV MVVMAQS T    DE I++   E  A         RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIEVSGGENTA---------RVCPATILPC 60

Query: 79 KTDSECSPCYC--VNGSCI 94
          KTDSECSPC C   +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

BLAST of CcUC10G195500 vs. ExPASy TrEMBL
Match: A0A0A0KWE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.6e-08
Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 19 MEIKNKVALVGMVVVMVVMAQSATA-AVDEGIQLP-AEGAASYYHTPPPPRVCPVMILPC 78
          ME+KNK ALV MVV MVVMAQS T    DE I+L   E  A         RVCP  +LPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITADETIELSGGENTA---------RVCPATLLPC 60

Query: 79 KTDSECSPCYC--VNGSCI 94
          +TDSECSPC C   +G+C+
Sbjct: 61 ETDSECSPCICNVKSGACV 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52766.11.8e-2581.82hypothetical protein Csa_015422 [Cucumis sativus][more]
KAA0044341.15.2e-0959.49hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa][more]
TYK29470.11.1e-0858.23hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa][more]
KGN52767.17.4e-0854.43hypothetical protein Csa_015168 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KY398.5e-2681.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1[more]
A0A5A7TRY52.5e-0959.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E1Q55.6e-0958.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KWE93.6e-0854.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G195500.1CcUC10G195500.1mRNA