CcUC10G193660 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G193660
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Location	CicolChr10: 14955254 .. 14955647 (-)
RNA-Seq Expression	CcUC10G193660
Synteny	CcUC10G193660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAACAACCGTAAATGGTCCAGAACAGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAGTTGAGTCGTATAACTTCTCATCTGTTATGGCTTGGCCCTTTTATGGTGGATATTGGGGCACAGACTCCTTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATTTATTCGAAGCAACCACCGGTATGAGAATGATGCATAAATTTTTATGAACTTATTTTCATTTTCAGCAATTCATGGAAAGATTAATCGAGGAAAAACTTATGAATGGACCAGCTACAAGCAAAGACCTCATGATAGTGAATATGGGACCTCACCACCCATCAATGCACGGTGTTCTTCAGCTCATCCTTACTTTGGATGG

mRNA sequence

AAGCAACAACCGTAAATGGTCCAGAACAGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAGTTGAGTCGTATAACTTCTCATCTGTTATGGCTTGGCCCTTTTATGGTGGATATTGGGGCACAGACTCCTTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATTTATTCGAAGCAACCACCGCAATTCATGGAAAGATTAATCGAGGAAAAACTTATGAATGGACCAGCTACAAGCAAAGACCTCATGATAGTGAATATGGGACCTCACCACCCATCAATGCACGGTGTTCTTCAGCTCATCCTTACTTTGGATGG

Coding sequence (CDS)

ATGTTGGAGTTGAGTCGTATAACTTCTCATCTGTTATGGCTTGGCCCTTTTATGGTGGATATTGGGGCACAGACTCCTTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATTTATTCGAAGCAACCACCGCAATTCATGGAAAGATTAATCGAGGAAAAACTTATGAATGGACCAGCTACAAGCAAAGACCTCATGATAGTGAATATGGGACCTCACCACCCATCAATGCACGGTGTTCTTCAGCTCATCCTTACTTTGGATGG

Protein sequence

MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAIHGKINRGKTYEWTSYKQRPHDSEYGTSPPINARCSSAHPYFGW

Homology

[Close]

BLAST of CcUC10G193660 vs. NCBI nr
Match: QCE14651.1 (NADH dehydrogenase I subunit 7 [Vigna unguiculata])

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAIH--------GKIN 60
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFREREL+YDLFEA T +         G + 
Sbjct: 91  MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVA 150

Query: 61  RGKTYEWTSY 63
           + K Y++ +Y
Sbjct: 151 KDKCYDFCNY 160

[Close]

BLAST of CcUC10G193660 vs. NCBI nr
Match: YP_009462576.1 (NADH-plastoquinone oxidoreductase subunit 7 [Boehmeria spicata] >AUV64891.1 NADH-plastoquinone oxidoreductase subunit 7 [Boehmeria spicata])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEATT +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEATTGM 151

[Close]

BLAST of CcUC10G193660 vs. NCBI nr
Match: KAG4109411.1 (hypothetical protein ERO13_1Z049694v2 [Gossypium hirsutum])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEATT +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEATTGM 151

[Close]

BLAST of CcUC10G193660 vs. NCBI nr
Match: YP_009462675.1 (NADH-plastoquinone oxidoreductase subunit 7 [Boehmeria umbrosa] >AUV64990.1 NADH-plastoquinone oxidoreductase subunit 7 [Boehmeria umbrosa])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEATT +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEATTGM 151

[Close]

BLAST of CcUC10G193660 vs. NCBI nr
Match: TYJ00663.1 (hypothetical protein E1A91_A13G100700v1 [Gossypium mustelinum])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRITSHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEA T +
Sbjct: 105 MLELSRITSHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGM 151

[Close]

BLAST of CcUC10G193660 vs. ExPASy Swiss-Prot
Match: B1A990 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carica papaya OX=3649 GN=ndhH PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-17
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEA T +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGM 151

[Close]

BLAST of CcUC10G193660 vs. ExPASy Swiss-Prot
Match: Q09MC0 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrus sinensis OX=2711 GN=ndhH PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-17
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEA T +
Sbjct: 107 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGM 153

[Close]

BLAST of CcUC10G193660 vs. ExPASy Swiss-Prot
Match: Q4VZL2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhH PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-17
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEA T +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGM 151

[Close]

BLAST of CcUC10G193660 vs. ExPASy Swiss-Prot
Match: Q49KU2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ndhH PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-17
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEA T +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGM 151

[Close]

BLAST of CcUC10G193660 vs. ExPASy Swiss-Prot
Match: A0ZZ91 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gossypium barbadense OX=3634 GN=ndhH PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-17
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEA T +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGM 151

[Close]

BLAST of CcUC10G193660 vs. ExPASy TrEMBL
Match: A0A4D6NNY3 (NADH dehydrogenase I subunit 7 OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g1654 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.8e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAIH--------GKIN 60
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFREREL+YDLFEA T +         G + 
Sbjct: 91  MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVA 150

Query: 61  RGKTYEWTSY 63
           + K Y++ +Y
Sbjct: 151 KDKCYDFCNY 160

[Close]

BLAST of CcUC10G193660 vs. ExPASy TrEMBL
Match: A0A2K9VR14 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Boehmeria spicata OX=1303698 GN=ndhH PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEATT +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEATTGM 151

[Close]

BLAST of CcUC10G193660 vs. ExPASy TrEMBL
Match: A0A5D2QRS9 (Complex1_49kDa domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A05G359000v1 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEATT +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEATTGM 151

[Close]

BLAST of CcUC10G193660 vs. ExPASy TrEMBL
Match: A0A411AV18 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Chunia bucklandioides OX=96568 GN=ndhH PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEATT +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEATTGM 151

[Close]

BLAST of CcUC10G193660 vs. ExPASy TrEMBL
Match: A0A5J5VW89 (Complex1_49kDa domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G336900v1 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERELVYDLFEATT +
Sbjct: 95  MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEATTGM 141

[Close]

BLAST of CcUC10G193660 vs. TAIR 10
Match: ATCG01110.1 (NAD(P)H dehydrogenase subunit H )

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-18
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1   MLELSRITSHLLWLGPFMVDIGAQTPFFYIFRERELVYDLFEATTAI 48
           MLELSRI SHLLWLGPFM DIGAQTPFFYIFRERE VYDLFEA T +
Sbjct: 105 MLELSRIASHLLWLGPFMADIGAQTPFFYIFREREFVYDLFEAATGM 151

The following BLAST results are available for this feature:

BLAST of CcUC10G193660 vs. NCBI nr


Match Name	E-value	Identity	Description
QCE14651.1	1.6e-15	64.29	NADH dehydrogenase I subunit 7 [Vigna unguiculata]	[more]
YP_009462576.1	2.1e-15	91.49	NADH-plastoquinone oxidoreductase subunit 7 [Boehmeria spicata] >AUV64891.1 NADH...	[more]
KAG4109411.1	2.1e-15	91.49	hypothetical protein ERO13_1Z049694v2 [Gossypium hirsutum]	[more]
YP_009462675.1	2.1e-15	91.49	NADH-plastoquinone oxidoreductase subunit 7 [Boehmeria umbrosa] >AUV64990.1 NADH...	[more]
TYJ00663.1	2.1e-15	91.49	hypothetical protein E1A91_A13G100700v1 [Gossypium mustelinum]	[more]

BLAST of CcUC10G193660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1A990	1.0e-17	89.36	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carica papaya OX=3649...	[more]
Q09MC0	1.0e-17	89.36	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrus sinensis OX=27...	[more]
Q4VZL2	1.0e-17	89.36	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q49KU2	1.0e-17	89.36	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Eucalyptus globulus s...	[more]
A0ZZ91	1.0e-17	89.36	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gossypium barbadense ...	[more]

BLAST of CcUC10G193660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D6NNY3	7.8e-16	64.29	NADH dehydrogenase I subunit 7 OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g1654 P...	[more]
A0A2K9VR14	1.0e-15	91.49	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Boehmeria spicata OX=...	[more]
A0A5D2QRS9	1.0e-15	91.49	Complex1_49kDa domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES3...	[more]
A0A411AV18	1.0e-15	91.49	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Chunia bucklandioides...	[more]
A0A5J5VW89	1.0e-15	91.49	Complex1_49kDa domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES31...	[more]

BLAST of CcUC10G193660 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01110.1	2.2e-18	87.23	NAD(P)H dehydrogenase subunit H	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029014	[NiFe]-hydrogenase, large subunit	GENE3D	1.10.645.10		coord: 1..53 e-value: 7.7E-12 score: 46.6
IPR029014	[NiFe]-hydrogenase, large subunit	SUPERFAMILY	56762	HydB/Nqo4-like	coord: 1..45
IPR022885	NAD(P)H-quinone oxidoreductase subunit D/H	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 1..47
None	No IPR available	PANTHER	PTHR11993:SF39	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT H, CHLOROPLASTIC	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G193660.1	CcUC10G193660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H