CcUC10G193540 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G193540
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA-directed RNA polymerase subunit beta
LocationCicolChr10: 13225072 .. 13226075 (-)
RNA-Seq ExpressionCcUC10G193540
SyntenyCcUC10G193540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAGATCAAGAAATTGAATTTCAATTATTTGTGGTGGTAGAACCATTTCTAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCTGAATTCTACGTATCCGCAGGATTAATTTGGAAAACCCGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAACATTCCTCTAATGAATTCCCTGGGAACTTCTATAGTAAATGGACTATACAGAATTGTGATCAGTCAAATATTGCAAAGCCCCGGTATCTATTACCGGTCAGAATTGGACCATAACGGAATTTCGGTCTATACCGGCACCATAATATCTGATTGGGGAGGAAGATTAGAATTAGAGATTGATCGAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACAGAAAATATCTATTCTAGTTCTATCATCAGCTATGGGTTCGAATCTNCACTTTTTTTTTCTTTTTTTTTTTATAATTTTCTTTTCTTTCCTTTTTCCTTTTCTTTCCTTTCTTTTTATTTCTTTCTTTCTCTTTAATTTAAATAAATAAATAACTAAATAAATAATTCACTTTTACGCCCCCCTTAATAATCAAGATAAATTTTAGCTCGATTCCCTCTTAATGACTTAAATGTGCAACTTACCACAAATTACTTCTGGCTTTCTCCCCTTCTTCCTTCGATCTACAAGAGAAAAACAACTTAGTCCACTTCGGTACTACGTACTTATGTTTAACACTTACAAATGAAAGTAGGGTTTACAGATGGTCAAACGGAGCATTTGAACCAAACCTTGGAAGATATGTTGCGCACTTGCACAATGGATTTTTTTAGCAGATGTAGGCGACAAAAAAGGATTTGCAACTCTTTAATGCCAAAACAAAAAGTCGAAGAACTTTCTAAGTTTCCAAAAATTGAAGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGTGGTAGAACCATTTCTAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCTGAATTC

mRNA sequence

ACAGATCAAGAAATTGAATTTCAATTATTTGTGGTGGTAGAACCATTTCTAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCTGAATTCTACGTATCCGCAGGATTAATTTGGAAAACCCGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAACATTCCTCTAATGAATTCCCTGGGAACTTCTATAGTAAATGGACTATACAGAATTGTGATCAGTCAAATATTGCAAAGCCCCGGTATCTATTACCGGTCAGAATTGGACCATAACGGAATTTCGGTCTATACCGGCACCATAATATCTGATTGGGGAGGAAGATTAGAATTAGAGATTGATCGAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACAGAAAATATCTATTCTAGTTCTATCATCAGCTATGGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGTGGTAGAACCATTTCTAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCTGAATTC

Coding sequence (CDS)

ACAGATCAAGAAATTGAATTTCAATTATTTGTGGTGGTAGAACCATTTCTAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCTGAATTCTACGTATCCGCAGGATTAATTTGGAAAACCCGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAACATTCCTCTAATGAATTCCCTGGGAACTTCTATAGTAAATGGACTATACAGAATTGTGATCAGTCAAATATTGCAAAGCCCCGGTATCTATTACCGGTCAGAATTGGACCATAACGGAATTTCGGTCTATACCGGCACCATAATATCTGATTGGGGAGGAAGATTAGAATTAGAGATTGATCGAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACAGAAAATATCTATTCTAGTTCTATCATCAGCTATGGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGTGGTAGAACCATTTCTAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCTGAATTC

Protein sequence

TDQEIEFQLFVVVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTDQEIEFQLFVVVEPFLKERDAVYESLTYSSEF
Homology
[Close]
BLAST of CcUC10G193540 vs. NCBI nr
Match: AHM89856.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 264.2 bits (674), Expect = 7.8e-67
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. NCBI nr
Match: YP_009753166.1 (RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase subunit beta [Trichosanthes truncata])

HSP 1 Score: 264.2 bits (674), Expect = 7.8e-67
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. NCBI nr
Match: AHM89028.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 264.2 bits (674), Expect = 7.8e-67
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. NCBI nr
Match: AHM90682.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 264.2 bits (674), Expect = 7.8e-67
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. NCBI nr
Match: QZL38585.1 (RNA polymerase beta subunit [Citrullus naudinianus])

HSP 1 Score: 264.2 bits (674), Expect = 7.8e-67
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 264.2 bits (674), Expect = 1.0e-69
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. ExPASy Swiss-Prot
Match: Q0ZJ28 (DNA-directed RNA polymerase subunit beta OS=Vitis vinifera OX=29760 GN=rpoB PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.5e-68
Identity = 133/147 (90.48%), Postives = 139/147 (94.56%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKT RDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVI+QILQSPGIYYRSELDHNGISVYTGTI+SDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVINQILQSPGIYYRSELDHNGISVYTGTIVSDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. ExPASy Swiss-Prot
Match: Q0G9X0 (DNA-directed RNA polymerase subunit beta OS=Daucus carota OX=4039 GN=rpoB PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.9e-68
Identity = 131/147 (89.12%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSEFY+SAGLIWKT RDMQEQTIF+GN
Sbjct: 44  TDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSEFYISAGLIWKTSRDMQEQTIFLGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           +KARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 KKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. ExPASy Swiss-Prot
Match: Q49L06 (DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoB PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.3e-68
Identity = 132/147 (89.80%), Postives = 139/147 (94.56%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKT RDMQEQT+FIGN
Sbjct: 44  TDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTLFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. ExPASy Swiss-Prot
Match: A0ZZ27 (DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense OX=3634 GN=rpoB PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.2e-67
Identity = 131/147 (89.12%), Postives = 139/147 (94.56%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           T+QEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKT +DMQEQTIFIGN
Sbjct: 44  TEQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSKDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. ExPASy TrEMBL
Match: A0A218KG28 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoB PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.8e-67
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. ExPASy TrEMBL
Match: A0A6H0ETN6 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=rpoB PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.8e-67
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. ExPASy TrEMBL
Match: A0A1X9Q1B9 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.8e-67
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. ExPASy TrEMBL
Match: A0A1P8LDX8 (DNA-directed RNA polymerase subunit beta OS=Citrullus mucosospermus OX=519315 GN=rpoB PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.8e-67
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. ExPASy TrEMBL
Match: A0A6M3RVI4 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rpoB PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.8e-67
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGN 60
           TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGN
Sbjct: 44  TDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKTRRDMQEQTIFIGN 103

Query: 61  IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 120
           IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID
Sbjct: 104 IPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEID 163

Query: 121 RKARIWARVSRKQKISILVLSSAMDTD 144
           RKARIWARVSRKQKISILVLSSAM ++
Sbjct: 164 RKARIWARVSRKQKISILVLSSAMGSN 190

[Close]
BLAST of CcUC10G193540 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 248.8 bits (634), Expect = 3.1e-66
Identity = 127/143 (88.81%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 2   DQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNI 61
           D EIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKT R+MQEQ IFIGNI
Sbjct: 45  DHEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRNMQEQRIFIGNI 104

Query: 62  PLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDR 121
           PLMNSLGTSIVNG+YRIVI+QILQSPGIYY+SELDHNGISVYTGTIISDWGGRLELEID+
Sbjct: 105 PLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHNGISVYTGTIISDWGGRLELEIDK 164

Query: 122 KARIWARVSRKQKISILVLSSAM 141
           KARIWARVSRKQKISILVLSSAM
Sbjct: 165 KARIWARVSRKQKISILVLSSAM 187

The following BLAST results are available for this feature:
BLAST of CcUC10G193540 vs. NCBI nr
Match NameE-valueIdentityDescription
AHM89856.17.8e-6792.52RNA polymerase beta subunit [Lagenaria siceraria][more]
YP_009753166.17.8e-6792.52RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase ... [more]
AHM89028.17.8e-6792.52RNA polymerase beta subunit [Lagenaria siceraria][more]
AHM90682.17.8e-6792.52RNA polymerase beta subunit [Lagenaria siceraria][more]
QZL38585.17.8e-6792.52RNA polymerase beta subunit [Citrullus naudinianus][more]
BLAST of CcUC10G193540 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP11.0e-6992.52DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
Q0ZJ281.5e-6890.48DNA-directed RNA polymerase subunit beta OS=Vitis vinifera OX=29760 GN=rpoB PE=3... [more]
Q0G9X01.9e-6889.12DNA-directed RNA polymerase subunit beta OS=Daucus carota OX=4039 GN=rpoB PE=3 S... [more]
Q49L063.3e-6889.80DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus ... [more]
A0ZZ271.2e-6789.12DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense OX=3634 GN=rpoB... [more]
BLAST of CcUC10G193540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A218KG283.8e-6792.52DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=3... [more]
A0A6H0ETN63.8e-6792.52DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=r... [more]
A0A1X9Q1B93.8e-6792.52DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
A0A1P8LDX83.8e-6792.52DNA-directed RNA polymerase subunit beta OS=Citrullus mucosospermus OX=519315 GN... [more]
A0A6M3RVI43.8e-6792.52DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii var. japonic... [more]
BLAST of CcUC10G193540 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00190.13.1e-6688.81RNA polymerase subunit beta [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1100.10coord: 5..84
e-value: 5.4E-36
score: 125.7
NoneNo IPR availablePANTHERPTHR20856:SF30DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 2..140
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 5..157
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10RNA polymerase Rpb2, domain 2coord: 85..152
e-value: 5.4E-36
score: 125.7
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 81..146
e-value: 2.4E-15
score: 56.7
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 2..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G193540.1CcUC10G193540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding