CcUC10G193440 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G193440
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Location	CicolChr10: 12368657 .. 12369985 (-)
RNA-Seq Expression	CcUC10G193440
Synteny	CcUC10G193440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTCATTTTCGTGCTTATCCTAATTGTCGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCTTAGTTTTTGAATATTTAGACAATTAAAAAAAACATTGAGACAGTTATGAATTCCCTTGAGTTTCCCTTACTTAATCGAACAACCCAAACTTCCGTTATTTCAACTACATCAAATGATCTTTCAAATTGGTCAAGACTCTCCACTTTATGGTCGCTTCTCTATGGTACCAGTTGTTGCTTCATTGAATTTGCTTCATTAATAGGTTCACGATTCGACTTTGATCGTTATGGACTGGTACCAAGATCTAGTCCTAGACAAGCAGACTTCATTTTAACAGCGGGTACGGTAACAATGAAAATGGATCCTTCTTTAGTAAGATTATATGAGCAAATGCCTGAACCAAAATATGTTATTGCTATGGGAGCATGTACAATTACAGGAGGGATGTTCAGTACCGATTCTTATAGTACTGTTCGGGGAGTCGATAAGTTAATTCCTGTTGATGTGTATTTGCCGGGTTGTCCACCTAAACCCGAGGCTGTTATAGATGCTATAACAAAACTTCGTAAGAAAATATCTTGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGAGAATCGGTGTTTTACTACCAACCACAAATTTCATGTTGGCCTAAGTACTCATACTGGAAATTACGATCAAGGATTACTCTATCAACCATCATCTACTTCAGAGATCATCCCTCCTGAAACTTTTTTCAAATAAAAAAGTGCAGTCTCTTCCTACGAATTAGTAAATTAGGCAATATACTTTTGTACATAATAACAAAGAATGAGTGAATCTTCATAAATTTTTCATTGTAAATGGGAAATACTTATACAAATCAAAAGAAAAAAATGGGGGAGGGAGATAAAAAAGATGCAGGGTCTTTTGTCTTCTTGGCTAGTCAAACATGGACTGGTTCATAGATCTTTGGGTTACGTAGCTTGAACTGTGATGGCCACAATGCTTAGCTATTACCGATCCCCAAGATGTCTTTGGTTGAATCTTCACACTTGATCCACCGTCTGAACTTCCTACATTCACTCCCGGAGAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTTTAGTGCGGCACGAAGCTGCTGACACCGAGTCGGCTCCTATGCCACGCAAATCAATCATGTAG

mRNA sequence

ATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGACAATTAAAAAAAACATTGAGACAGTTATGAATTCCCTTGAGTTTCCCTTACTTAATCGAACAACCCAAACTTCCGTTATTTCAACTACATCAAATGATCTTTCAAATTGGTCAAGACTCTCCACTTTATGGTCGCTTCTCTATGGTACCAGTTGTTGCTTCATTGAATTTGCTTCATTAATAGGTTCACGATTCGACTTTGATCGTTATGGACTGGTACCAAGATCTAGTCCTAGACAAGCAGACTTCATTTTAACAGCGGGAGGGATGTTCAGTACCGATTCTTATAGTACTGTTCGGGGAGTCGATAAAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTTTAGTGCGGCACGAAGCTGCTGACACCGAGTCGGCTCCTATGCCACGCAAATCAATCATGTAG

Coding sequence (CDS)

ATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGACAATTAAAAAAAACATTGAGACAGTTATGAATTCCCTTGAGTTTCCCTTACTTAATCGAACAACCCAAACTTCCGTTATTTCAACTACATCAAATGATCTTTCAAATTGGTCAAGACTCTCCACTTTATGGTCGCTTCTCTATGGTACCAGTTGTTGCTTCATTGAATTTGCTTCATTAATAGGTTCACGATTCGACTTTGATCGTTATGGACTGGTACCAAGATCTAGTCCTAGACAAGCAGACTTCATTTTAACAGCGGGAGGGATGTTCAGTACCGATTCTTATAGTACTGTTCGGGGAGTCGATAAAAGTGGTGGAACGTGCGGAACCACATATTGGATTACTTTAGTGCGGCACGAAGCTGCTGACACCGAGTCGGCTCCTATGCCACGCAAATCAATCATGTAG

Protein sequence

MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGTIKKNIETVMNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADFILTAGGMFSTDSYSTVRGVDKSGGTCGTTYWITLVRHEAADTESAPMPRKSIM

Homology

[Close]

BLAST of CcUC10G193440 vs. NCBI nr
Match: RDY14683.1 (ATP synthase subunit beta, chloroplastic, partial [Mucuna pruriens])

HSP 1 Score: 235.0 bits (598), Expect = 5.1e-58
Identity = 129/202 (63.86%), Postives = 140/202 (69.31%), Query Frame = 0


Query: 1   MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL--------------------- 60
           +GDAW+QFRIRYYMFAL+FVVFDVETVFLYPWAMSFDVL                     
Sbjct: 674 IGDAWLQFRIRYYMFALIFVVFDVETVFLYPWAMSFDVLGISVFIEAFIFVLILIVGSVY 733

Query: 61  ----GTIKKNIETVMNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFI 120
               GTIKKNIET+MNS+EFPLL++TT+ SVISTT NDLSNWS+LS+LW LLYGTSCCFI
Sbjct: 734 AWRKGTIKKNIETIMNSIEFPLLDQTTKNSVISTTLNDLSNWSKLSSLWPLLYGTSCCFI 793

Query: 121 EFASLIGSRFDFDRYGLVPRSSPRQADFILTA---------------------------- 145
           EFASLIGSRFDFDRYGLVPRSSPRQAD ILTA                            
Sbjct: 794 EFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMG 853

[Close]

BLAST of CcUC10G193440 vs. NCBI nr
Match: OTF84306.1 (putative NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 [Helianthus annuus])

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-56
Identity = 128/193 (66.32%), Postives = 134/193 (69.43%), Query Frame = 0


Query: 1   MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGTI----------------KK 60
           +GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG                   +
Sbjct: 51  IGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVEKTE 110

Query: 61  NIETVMNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSR 120
            IE VMNS+EFPL +RTTQ SVISTT NDLSNWSRLS+LW LLYGTSCCFIEFASLIGSR
Sbjct: 111 KIEIVMNSIEFPLFHRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSR 170

Query: 121 FDFDRYGLVPRSSPRQADFILTA---------------------------------GGMF 145
           FDFDRYGLVPRSSPRQAD ILTA                                 GGMF
Sbjct: 171 FDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF 230

[Close]

BLAST of CcUC10G193440 vs. NCBI nr
Match: YP_010010436.1 (NADH-plastoquinone oxidoreductase subunit 3 [Hippeastrum rutilum] >QOE56782.1 NADH-plastoquinone oxidoreductase subunit 3 [Hippeastrum rutilum])

HSP 1 Score: 222.2 bits (565), Expect = 3.4e-54
Identity = 129/220 (58.64%), Postives = 136/220 (61.82%), Query Frame = 0


Query: 1   MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGTI------------------ 60
           MGDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG                    
Sbjct: 51  MGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALFNFRAYPNCWFS 110

Query: 61  -------------------------KKNIETVMNSLEFPLLNRTTQTSVISTTSNDLSNW 120
                                    K +IETVMN ++FPLL++TT  SVISTTSNDLSNW
Sbjct: 111 LCMAKRSIGMVLAEYSENQKKKKEGKDSIETVMNLIDFPLLDQTTPNSVISTTSNDLSNW 170

Query: 121 SRLSTLWSLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADFILTA---------- 145
           SRLS+LW LLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD ILTA          
Sbjct: 171 SRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPS 230

[Close]

BLAST of CcUC10G193440 vs. NCBI nr
Match: BBN68609.1 (hypothetical protein Prudu_498S000400, partial [Prunus dulcis])

HSP 1 Score: 214.5 bits (545), Expect = 7.1e-52
Identity = 119/161 (73.91%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGT-------------IKKN-- 60
           +GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG              I  N  
Sbjct: 67  IGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILISSNNK 126

Query: 61  -----IETVMNS-LEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFAS 120
                IETVMNS +EFPLL+RTTQ SVISTTS+DLSNWSRLS+LW LLYGTSCCFIEFAS
Sbjct: 127 KKITKIETVMNSIIEFPLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFAS 186

Query: 121 LIGSRFDFDRYGLVPRSSPRQADFILTAGGMFSTDSYSTVR 141
           LIGSRFDFDRYGLVPRSSPRQAD ILTAG +    + S VR
Sbjct: 187 LIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVR 227

[Close]

BLAST of CcUC10G193440 vs. NCBI nr
Match: KAG6540670.1 (hypothetical protein Mapa_018002 [Marchantia paleacea])

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-46
Identity = 108/177 (61.02%), Postives = 122/177 (68.93%), Query Frame = 0


Query: 1   MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGTIKKNIETVMNSLEFPLLNR 60
           MG+A +QF+IRYYMFALVFV+FDVETVFLYPWAMSF       K+   + NS+E  +LN+
Sbjct: 51  MGEACIQFQIRYYMFALVFVIFDVETVFLYPWAMSF--YNFEDKSSTMLRNSIESSVLNK 110

Query: 61  TTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 120
           T   S+I TT ND SNW+RLS+LW LLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ
Sbjct: 111 TLTNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 170

Query: 121 ADFILTA---------------------------------GGMFSTDSYSTVRGVDK 145
           AD I+TA                                 GGMFSTDSY+TVRGVDK
Sbjct: 171 ADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDK 225

[Close]

BLAST of CcUC10G193440 vs. ExPASy Swiss-Prot
Match: Q4VZH1 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhK PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.8e-40
Identity = 90/128 (70.31%), Postives = 93/128 (72.66%), Query Frame = 0


Query: 50  MNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSRFDFDR 109
           MNS+EFPLL+RTTQTSVISTTSNDLSNWSRLS+LW LLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 110 YGLVPRSSPRQADFILTA---------------------------------GGMFSTDSY 145
           YGLVPRSSPRQAD ILTA                                 GGMFSTDSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

[Close]

BLAST of CcUC10G193440 vs. ExPASy Swiss-Prot
Match: A1XGP2 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Ranunculus macranthus OX=334596 GN=ndhK PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-39
Identity = 89/128 (69.53%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 50  MNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSRFDFDR 109
           MNS+EFPLLN+TTQ SVISTTSNDLSNWSRLS+LW LLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLNQTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 110 YGLVPRSSPRQADFILTA---------------------------------GGMFSTDSY 145
           YGLVPRSSPRQAD ILTA                                 GGMFSTDSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

[Close]

BLAST of CcUC10G193440 vs. ExPASy Swiss-Prot
Match: Q0G9V8 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Daucus carota OX=4039 GN=ndhK PE=3 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 89/128 (69.53%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 50  MNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSRFDFDR 109
           MNS+EFPLL+RTTQ SVISTTSNDLSNWSRLS+LW LLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 110 YGLVPRSSPRQADFILTA---------------------------------GGMFSTDSY 145
           YGLVPRSSPRQAD ILTA                                 GGMFSTDSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSY 120

[Close]

BLAST of CcUC10G193440 vs. ExPASy Swiss-Prot
Match: Q06GZ3 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Drimys granadensis OX=224735 GN=ndhK PE=3 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 89/128 (69.53%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 50  MNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSRFDFDR 109
           MNS+EFPLL+RTTQ SVISTTSNDLSNWSRLS+LW LLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 110 YGLVPRSSPRQADFILTA---------------------------------GGMFSTDSY 145
           YGLVPRSSPRQAD ILTA                                 GGMFSTDSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

[Close]

BLAST of CcUC10G193440 vs. ExPASy Swiss-Prot
Match: Q0G9L5 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=ndhK PE=3 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 89/128 (69.53%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 50  MNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSRFDFDR 109
           MNS+EFPLL+RTTQ SVISTTSNDLSNWSRLS+LW LLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 110 YGLVPRSSPRQADFILTA---------------------------------GGMFSTDSY 145
           YGLVPRSSPRQAD ILTA                                 GGMFSTDSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

[Close]

BLAST of CcUC10G193440 vs. ExPASy TrEMBL
Match: A0A371II26 (NADH dehydrogenase subunit 3 (Fragment) OS=Mucuna pruriens OX=157652 GN=atpB PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.5e-58
Identity = 129/202 (63.86%), Postives = 140/202 (69.31%), Query Frame = 0


Query: 1   MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL--------------------- 60
           +GDAW+QFRIRYYMFAL+FVVFDVETVFLYPWAMSFDVL                     
Sbjct: 674 IGDAWLQFRIRYYMFALIFVVFDVETVFLYPWAMSFDVLGISVFIEAFIFVLILIVGSVY 733

Query: 61  ----GTIKKNIETVMNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFI 120
               GTIKKNIET+MNS+EFPLL++TT+ SVISTT NDLSNWS+LS+LW LLYGTSCCFI
Sbjct: 734 AWRKGTIKKNIETIMNSIEFPLLDQTTKNSVISTTLNDLSNWSKLSSLWPLLYGTSCCFI 793

Query: 121 EFASLIGSRFDFDRYGLVPRSSPRQADFILTA---------------------------- 145
           EFASLIGSRFDFDRYGLVPRSSPRQAD ILTA                            
Sbjct: 794 EFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMG 853

[Close]

BLAST of CcUC10G193440 vs. ExPASy TrEMBL
Match: A0A1Y3BXS1 (NADH dehydrogenase subunit 3 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c0702g0576861 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 6.1e-57
Identity = 128/193 (66.32%), Postives = 134/193 (69.43%), Query Frame = 0


Query: 1   MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGTI----------------KK 60
           +GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG                   +
Sbjct: 51  IGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFVEALIFVLILIVEKTE 110

Query: 61  NIETVMNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSR 120
            IE VMNS+EFPL +RTTQ SVISTT NDLSNWSRLS+LW LLYGTSCCFIEFASLIGSR
Sbjct: 111 KIEIVMNSIEFPLFHRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSR 170

Query: 121 FDFDRYGLVPRSSPRQADFILTA---------------------------------GGMF 145
           FDFDRYGLVPRSSPRQAD ILTA                                 GGMF
Sbjct: 171 FDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF 230

[Close]

BLAST of CcUC10G193440 vs. ExPASy TrEMBL
Match: A0A1Y3BXB0 (NADH-quinone oxidoreductase subunit B OS=Helianthus annuus OX=4232 GN=nuoB PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.2e-56
Identity = 127/189 (67.20%), Postives = 134/189 (70.90%), Query Frame = 0


Query: 1   MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGTIKKNIET------------ 60
           +GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG +   +E             
Sbjct: 51  IGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG-VSVFVEALIFVLILIVGLI 110

Query: 61  VMNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSRFDFD 120
           VMNS+EFPL +RTTQ SVISTT NDLSNWSRLS+LW LLYGTSCCFIEFASLIGSRFDFD
Sbjct: 111 VMNSIEFPLFHRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFD 170

Query: 121 RYGLVPRSSPRQADFILTA---------------------------------GGMFSTDS 145
           RYGLVPRSSPRQAD ILTA                                 GGMFSTDS
Sbjct: 171 RYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDS 230

[Close]

BLAST of CcUC10G193440 vs. ExPASy TrEMBL
Match: A0A7L8HZ13 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Hippeastrum rutilum OX=214526 GN=ndhC PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.7e-54
Identity = 129/220 (58.64%), Postives = 136/220 (61.82%), Query Frame = 0


Query: 1   MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGTI------------------ 60
           MGDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG                    
Sbjct: 51  MGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALFNFRAYPNCWFS 110

Query: 61  -------------------------KKNIETVMNSLEFPLLNRTTQTSVISTTSNDLSNW 120
                                    K +IETVMN ++FPLL++TT  SVISTTSNDLSNW
Sbjct: 111 LCMAKRSIGMVLAEYSENQKKKKEGKDSIETVMNLIDFPLLDQTTPNSVISTTSNDLSNW 170

Query: 121 SRLSTLWSLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADFILTA---------- 145
           SRLS+LW LLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD ILTA          
Sbjct: 171 SRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPS 230

[Close]

BLAST of CcUC10G193440 vs. ExPASy TrEMBL
Match: A0A5H2XP40 (NADH dehydrogenase subunit 3 (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_498S000400 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.5e-52
Identity = 119/161 (73.91%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGT-------------IKKN-- 60
           +GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG              I  N  
Sbjct: 67  IGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILISSNNK 126

Query: 61  -----IETVMNS-LEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFAS 120
                IETVMNS +EFPLL+RTTQ SVISTTS+DLSNWSRLS+LW LLYGTSCCFIEFAS
Sbjct: 127 KKITKIETVMNSIIEFPLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFAS 186

Query: 121 LIGSRFDFDRYGLVPRSSPRQADFILTAGGMFSTDSYSTVR 141
           LIGSRFDFDRYGLVPRSSPRQAD ILTAG +    + S VR
Sbjct: 187 LIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVR 227

[Close]

BLAST of CcUC10G193440 vs. TAIR 10
Match: ATCG00430.1 (photosystem II reaction center protein G )

HSP 1 Score: 157.9 bits (398), Expect = 7.4e-39
Identity = 85/128 (66.41%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 50  MNSLEFPLLNRTTQTSVISTTSNDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSRFDFDR 109
           MNS++FP+L+RTT+ SVISTT NDLSNWSRLS+LW LLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIKFPILDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 110 YGLVPRSSPRQADFILTA---------------------------------GGMFSTDSY 145
           YGLVPRSSPRQAD ILTA                                 GGMFSTDSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

[Close]

BLAST of CcUC10G193440 vs. TAIR 10
Match: ATCG00440.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-16
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1  MGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG 41
          +GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG
Sbjct: 51 IGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG 90

[Close]

BLAST of CcUC10G193440 vs. TAIR 10
Match: AT5G11770.1 (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial )

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-10
Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 72  NDLSNWSRLSTLWSLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADFILTAG 129
           +DL NW+R  ++W + +G +CC +E      +R+D DR+G++ R SPRQ+D ++ AG
Sbjct: 73  DDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAG 129

The following BLAST results are available for this feature:

BLAST of CcUC10G193440 vs. NCBI nr


Match Name	E-value	Identity	Description
RDY14683.1	5.1e-58	63.86	ATP synthase subunit beta, chloroplastic, partial [Mucuna pruriens]	[more]
OTF84306.1	1.3e-56	66.32	putative NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 [Helianthus annuu...	[more]
YP_010010436.1	3.4e-54	58.64	NADH-plastoquinone oxidoreductase subunit 3 [Hippeastrum rutilum] >QOE56782.1 NA...	[more]
BBN68609.1	7.1e-52	73.91	hypothetical protein Prudu_498S000400, partial [Prunus dulcis]	[more]
KAG6540670.1	1.2e-46	61.02	hypothetical protein Mapa_018002 [Marchantia paleacea]	[more]

BLAST of CcUC10G193440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH1	3.8e-40	70.31	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cucumis sativus OX=36...	[more]
A1XGP2	1.1e-39	69.53	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Ranunculus macranthus...	[more]
Q0G9V8	1.5e-39	69.53	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Daucus carota OX=4039...	[more]
Q06GZ3	1.5e-39	69.53	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Drimys granadensis OX...	[more]
Q0G9L5	1.5e-39	69.53	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Liriodendron tulipife...	[more]

BLAST of CcUC10G193440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371II26	2.5e-58	63.86	NADH dehydrogenase subunit 3 (Fragment) OS=Mucuna pruriens OX=157652 GN=atpB PE=...	[more]
A0A1Y3BXS1	6.1e-57	66.32	NADH dehydrogenase subunit 3 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c0702g...	[more]
A0A1Y3BXB0	5.2e-56	67.20	NADH-quinone oxidoreductase subunit B OS=Helianthus annuus OX=4232 GN=nuoB PE=3 ...	[more]
A0A7L8HZ13	1.7e-54	58.64	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Hippeastrum rutilum O...	[more]
A0A5H2XP40	3.5e-52	73.91	NADH dehydrogenase subunit 3 (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_498S00...	[more]

BLAST of CcUC10G193440 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00430.1	7.4e-39	66.41	photosystem II reaction center protein G	[more]
ATCG00440.1	6.7e-16	95.00	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein	[more]
AT5G11770.1	4.2e-10	40.35	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000440	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	PFAM	PF00507	Oxidored_q4	coord: 2..43 e-value: 1.4E-13 score: 50.8
IPR038430	NADH:ubiquinone oxidoreductase, subunit 3 superfamily	GENE3D	1.20.58.1610	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	coord: 1..55 e-value: 2.0E-14 score: 55.5
None	No IPR available	GENE3D	3.40.50.12280		coord: 56..131 e-value: 3.4E-17 score: 64.1
None	No IPR available	PANTHER	PTHR11995:SF14	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL	coord: 48..128
None	No IPR available	PANTHER	PTHR11995	NADH DEHYDROGENASE	coord: 48..128
None	No IPR available	SUPERFAMILY	56770	HydA/Nqo6-like	coord: 65..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G193440.1	CcUC10G193440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015990	electron transport coupled proton transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding