CcUC10G189940 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G189940
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr10: 4927475 .. 4929552 (+)
RNA-Seq ExpressionCcUC10G189940
SyntenyCcUC10G189940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACATTGAATCTCTTCTCTTCATCCATGCCCGTAAAATGCAATCTACTTGGCTCAACGATGATAGAAACTTCCAGTGGCGCCTTCACTCGAGCGACATACATCCCTGGACTTCCCACATTCTTCACTTTTCGATTGATCGTCACAGGGCCCATTTTCAGATCTATAACTGAGATCGAAGGGTAATTCAAATCCGTCACTTTGAACGATCCATCGCAAACGAAGGTCTTCTTGGATATTTTCTCGATTTGTGTTGCATTGTAGCCTCGAGCACACAAGAAATTGAGGTAATCGTCGATTGTAATGTCGTAAACGAGGCCAGGGTCCATCGCACTGTTTGGATTAACATGTCCAGCACCGTATGCCAATGGAGTTGCTTTGAGTCCTGTGGAGTCCATAATTGGATGTAAATTGTTGTCCGTTGTTTTGGCTGCAGAGATGAAATTGATTGAAAGTTTTTTGGTTAACAGAAAGAAACATCTAGGAGATAGACTTGTTTTTATGTTTTTGATTTGATTGTATGATTGAACCTGTCGTCATGATTGCAGACTTAATGGCGGCTGGACTCCATTTGGGATTTAGGATTTTGAGAAGGCCTACGATGCCAGCAACATGGGGACAGGCCATGGATGTGCCAGAATCTACCTTGAAAGGAGCTTGACGATTGTCCAATGGTAGTTCTGTCAATGGTACTCCATCGGGGTAAGCCGCCAGTATATTCACACCTGGAGCTGTTATATCAGGCTGATAAAACACAACTCATTAATATGATTATATTGAATATGGTTGTCTTCTTTTAGTTTAATTTCACCTTGATTTTAACTCAATACTTTTTAATTGAAACATTTCATAACACATTGGGAAAAAGAAAACCTTAAGGATTGACTCCTCTATTGTATTGGGGCCTCTTGATGAGAAATCAGCCATTACTGGGGATGGTTTGATTTCCAGTTCTGTCATCACAGAACCAATGTAAGCCGTTGGTGTCCTGATCAAAGTAGTTGTTATTATGACTTAAAATTGTAAAAGACAATATATTTATGAACAATCTTGAGAAGTGATAGGGAAGTATAGGGGAATACTTTGTAGAATTGATGTATTGGAAGATGGATATGCTGTCATTATAGGTTACATGGGAAGCTGGAAGGATATGTATATCAGTTAAAATTGCATTCCCACTTTCCTCATCGTTAACCAAAATCATTCCAACAGCCCCTGCCTTGGCAGCTACATAACCCTTAGACACTCTTGGAAGACCCCCTCGAAGGCAAATCACAATCTTCCCTGTTAACTTTATGGGATCAAGCGAGCCCTCCTCACAAACTTCCCTGCAATAATTCATTTAAAGTTTGTTTCGTGCATGGTTTAATTATTCATTCATGTTTTCTTTGATATATTGGTTAAAGGAATCGAGAAAATATATATACTCACGCATCACTATTGGAGACATTGTTGGCTTTTGCATCCACAGCATTGATTAGAGGGTAGAACTTGTTAAATGGCATTGCCTTAAAAGAAAAGCTTGTACCCTGGTCTAGGCAATCGAGAGATATTTAAGATAAAGAATATTGTTCATATTAAGCTTGTCTACTTTTGAATGTATTGAATATGAGTTACCTTGAGTTTCTTCTTGTTCCCCAGGACCACAAAATTAGTGAAATCCCTATTGATGGAACTAGCGCCAACAGTTATAATCCATGGCGACACATTTGATACGGTTCCAGGAGTTGGTCCGACATTCCCAGCTGAGCAAACAACAACAATACCTCGCTCAACTGCATGGAAAGCTCCTACAGAGAGTGCATCACTAAAAAACTCCTTTGGCTCTCCACCGACAGAAATCGAGATAACATCAACGCCATCGCCAATTGCAGCTTCAAAAGCAGCTAAGGTATTTGGGTCCAAACACTCGCCGCTTTCTTCTGGCCAACAAACCTTGTAGGACGCAACACGGGTTCGAGGGGAGCCACCTTTAATAGTTCCGTTCCCCATTCCCAAAACATTAGCTCCAGAGACAAAATTGCCACCAGCAATGGATAAAGTGTGGGTTCCATGGCCTACATTGTCTCTTGAAGAATTG

mRNA sequence

GACATTGAATCTCTTCTCTTCATCCATGCCCGTAAAATGCAATCTACTTGGCTCAACGATGATAGAAACTTCCAGTGGCGCCTTCACTCGAGCGACATACATCCCTGGACTTCCCACATTCTTCACTTTTCGATTGATCGTCACAGGGCCCATTTTCAGATCTATAACTGAGATCGAAGGGACCACAAAATTAGTGAAATCCCTATTGATGGAACTAGCGCCAACAGTTATAATCCATGGCGACACATTTGATACGGTTCCAGGAGTTGGTCCGACATTCCCAGCTGAGCAAACAACAACAATACCTCGCTCAACTGCATGGAAAGCTCCTACAGAGAGTGCATCACTAAAAAACTCCTTTGGCTCTCCACCGACAGAAATCGAGATAACATCAACGCCATCGCCAATTGCAGCTTCAAAAGCAGCTAAGGACGCAACACGGGTTCGAGGGGAGCCACCTTTAATAGTTCCGTTCCCCATTCCCAAAACATTAGCTCCAGAGACAAAATTGCCACCAGCAATGGATAAAGTGTGGGTTCCATGGCCTACATTGTCTCTTGAAGAATTG

Coding sequence (CDS)

ATGCCCGTAAAATGCAATCTACTTGGCTCAACGATGATAGAAACTTCCAGTGGCGCCTTCACTCGAGCGACATACATCCCTGGACTTCCCACATTCTTCACTTTTCGATTGATCGTCACAGGGCCCATTTTCAGATCTATAACTGAGATCGAAGGGACCACAAAATTAGTGAAATCCCTATTGATGGAACTAGCGCCAACAGTTATAATCCATGGCGACACATTTGATACGGTTCCAGGAGTTGGTCCGACATTCCCAGCTGAGCAAACAACAACAATACCTCGCTCAACTGCATGGAAAGCTCCTACAGAGAGTGCATCACTAAAAAACTCCTTTGGCTCTCCACCGACAGAAATCGAGATAACATCAACGCCATCGCCAATTGCAGCTTCAAAAGCAGCTAAGGACGCAACACGGGTTCGAGGGGAGCCACCTTTAATAGTTCCGTTCCCCATTCCCAAAACATTAGCTCCAGAGACAAAATTGCCACCAGCAATGGATAAAGTGTGGGTTCCATGGCCTACATTGTCTCTTGAAGAATTG

Protein sequence

MPVKCNLLGSTMIETSSGAFTRATYIPGLPTFFTFRLIVTGPIFRSITEIEGTTKLVKSLLMELAPTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKAPTESASLKNSFGSPPTEIEITSTPSPIAASKAAKDATRVRGEPPLIVPFPIPKTLAPETKLPPAMDKVWVPWPTLSLEEL
Homology
BLAST of CcUC10G189940 vs. NCBI nr
Match: KAB8086787.1 (hypothetical protein EE612_010319 [Oryza sativa] >BAS78045.1 Os02g0269400 [Oryza sativa Japonica Group])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 54/138 (39.13%), Postives = 68/138 (49.28%), Query Frame = 0

Query: 62  MELAPTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKAPTESASLKNSFGSPPTEIEI 121
           M  A TV+ HG  F TV  VGP+FP   TT IPR+TA + P  S         PP + + 
Sbjct: 9   MVAAATVMTHGTVFCTVCDVGPSFPPANTTVIPRATACRVPWISL-------GPPNDSDN 68

Query: 122 TSTPSPIAASKAAK----------------DATRVRGEPPLIVPFPIPK--TLAPETKLP 181
           TSTPS +A+S AA+                 ATR RG PP   P P P    L   T+ P
Sbjct: 69  TSTPSFMASSTAARTAASPKFPPTPQQTLYTATRARGAPPRATPAPRPPWWWLTFHTRPP 128

BLAST of CcUC10G189940 vs. NCBI nr
Match: KAG5613519.1 (hypothetical protein H5410_024800 [Solanum commersonii])

HSP 1 Score: 68.2 bits (165), Expect = 8.5e-08
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 53   TTKLVKSLLMELAPTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKAPTESASLKNSF 112
            T  + KS  + +A TV I G T  TV G GP+FPAEQ T IP STAW AP    SL+NS 
Sbjct: 2123 TISVSKSRSIVVAATVRIQGATLTTVAGPGPSFPAEQETRIPFSTAWNAPIAIGSLENST 2182

Query: 113  GSP---PTEIEITSTPSPIAASKA 134
              P   P++ + TSTPS IA+S A
Sbjct: 2183 SRPDDEPSDSDKTSTPSAIASSNA 2206

BLAST of CcUC10G189940 vs. NCBI nr
Match: CAA7390606.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-07
Identity = 42/82 (51.22%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 54  TKLVKSLLMELAPTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKAPTESASLKNSFG 113
           TK      M LAPTV I G +  T PG GP FPA Q TT P S A KAP    S K+  G
Sbjct: 3   TKAGNRRSMVLAPTVTIQGASLATEPGAGPLFPAAQITTTPFSMARKAPMAMLSSKSGSG 62

Query: 114 SPPTEIEITSTPSPIAASKAAK 136
           +PP E E TSTPS +A+S  A+
Sbjct: 63  NPPRERESTSTPSLMASSIPAR 84

BLAST of CcUC10G189940 vs. NCBI nr
Match: ERM97025.1 (hypothetical protein AMTR_s00122p00023550 [Amborella trichopoda])

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-07
Identity = 45/116 (38.79%), Postives = 56/116 (48.28%), Query Frame = 0

Query: 62  MELAPTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKAPTESASLKNSFGSPPTEIEI 121
           M LA TV+I G  F TV G GP+FPAE TT IPR+ AW AP  +               +
Sbjct: 9   MVLAATVMIQGAVFLTVRGSGPSFPAEHTTVIPRAMAWNAPMRT--------------RL 68

Query: 122 TSTPSPIAASKAAKDATRVRGEPPLIVPFPIPKTLAPETKLPPAMDKVWVPWPTLS 178
           TST       +    A R  G PP   P   P+ +A  T  P A++   VPWP +S
Sbjct: 69  TST-------RTLYTARRASGAPPRATPTASPRYVADATGEPTAVEAQCVPWPLMS 103

BLAST of CcUC10G189940 vs. NCBI nr
Match: EXB78387.1 (hypothetical protein L484_003249 [Morus notabilis])

HSP 1 Score: 64.7 bits (156), Expect = 9.4e-07
Identity = 43/96 (44.79%), Postives = 51/96 (53.12%), Query Frame = 0

Query: 54  TKLVKSLLMELAPTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKAPTESASLKNSFG 113
           T++ K     LAPTV IHGD F TV G+GP FPA  TT  P +TAW APT  A L ++ G
Sbjct: 9   TRVGKERSSLLAPTVKIHGDVFCTVCGLGPEFPAAHTTATPFATAWNAPTAIAFLWSASG 68

Query: 114 ----SPPTEIEITSTPSPIAASKAAKDATRVRGEPP 146
               S   E + TSTPS    S A   +      PP
Sbjct: 69  YEGTSAAIETDTTSTPSRTDTSNALSMSAPAHNPPP 104

BLAST of CcUC10G189940 vs. ExPASy TrEMBL
Match: A0A0A9EXJ6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-11
Identity = 55/127 (43.31%), Postives = 65/127 (51.18%), Query Frame = 0

Query: 65  APTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKAPTESASLKNSFGSPPTEIEITST 124
           APTV+IHG  F    G GP FPAE  TT+PR  A  APT   S ++    PP+E E TST
Sbjct: 23  APTVMIHGAVFTRDDGFGPLFPAEHETTMPRRVAASAPTAMGSRESGNAPPPSESERTST 82

Query: 125 PSPIAASKAAK--------------DATRVRGEPPLIVPFPIPKTLAPETKLPPAMDKVW 178
           PS +A S  A+               ATR  G  P  VP   P+ LA  T  P A+D V 
Sbjct: 83  PSSMACSMPARMSELKHPCLQHTLYAATRAPGAMPRAVPDAYPRRLASATTAPAAVDAVC 142

BLAST of CcUC10G189940 vs. ExPASy TrEMBL
Match: A0A0A9VGG3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.9e-11
Identity = 54/121 (44.63%), Postives = 59/121 (48.76%), Query Frame = 0

Query: 59  SLLMELAPTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKAPTESASLKNSFGSPPTE 118
           S+ M LAPTV  HG  FDTVP  G  FP EQTT     TAWK    + SLK S    P E
Sbjct: 8   SMSMVLAPTVTSHGAVFDTVPAAGHEFPTEQTTVTQFLTAWKDLMATPSLKYSARDLPRE 67

Query: 119 IEITSTPSPIAASKAA--------------KDATRVRGEPPLIVPFPIPKTLAPETKLPP 166
           +E T TPS +AAS AA              +      G PP  VP P PK  AP T L  
Sbjct: 68  MESTCTPSWMAASNAAMMSASKHSLPFTGRQHTLYAAGAPPFAVPMPYPKRFAPGTNLSA 127

BLAST of CcUC10G189940 vs. ExPASy TrEMBL
Match: A0A3Q7GC38 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.5e-10
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 0

Query: 42   PIFRSITEIEGTTKLVKSLLMELAPTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKA 101
            P+ RS  + E T  + KS  + +A TV I G T  TV G GP+FPAEQ T IP STAW A
Sbjct: 1562 PLMRSKPQEELTISVSKSRSIVVAATVRIQGATLTTVAGPGPSFPAEQETRIPFSTAWNA 1621

Query: 102  PTESASLKNSFGSP---PTEIEITSTPSPIAASKA 134
            P    SL+NS   P   P++ + TSTPS IA+S A
Sbjct: 1622 PIAIGSLENSTSRPDDEPSDSDKTSTPSAIASSNA 1656

BLAST of CcUC10G189940 vs. ExPASy TrEMBL
Match: A0A0P0VHF2 (Os02g0269400 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0269400 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.3e-09
Identity = 54/138 (39.13%), Postives = 68/138 (49.28%), Query Frame = 0

Query: 62  MELAPTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKAPTESASLKNSFGSPPTEIEI 121
           M  A TV+ HG  F TV  VGP+FP   TT IPR+TA + P  S         PP + + 
Sbjct: 9   MVAAATVMTHGTVFCTVCDVGPSFPPANTTVIPRATACRVPWISL-------GPPNDSDN 68

Query: 122 TSTPSPIAASKAAK----------------DATRVRGEPPLIVPFPIPK--TLAPETKLP 181
           TSTPS +A+S AA+                 ATR RG PP   P P P    L   T+ P
Sbjct: 69  TSTPSFMASSTAARTAASPKFPPTPQQTLYTATRARGAPPRATPAPRPPWWWLTFHTRPP 128

BLAST of CcUC10G189940 vs. ExPASy TrEMBL
Match: A0A7I8K2R0 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_02002068 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 42/82 (51.22%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 54  TKLVKSLLMELAPTVIIHGDTFDTVPGVGPTFPAEQTTTIPRSTAWKAPTESASLKNSFG 113
           TK      M LAPTV I G +  T PG GP FPA Q TT P S A KAP    S K+  G
Sbjct: 3   TKAGNRRSMVLAPTVTIQGASLATEPGAGPLFPAAQITTTPFSMARKAPMAMLSSKSGSG 62

Query: 114 SPPTEIEITSTPSPIAASKAAK 136
           +PP E E TSTPS +A+S  A+
Sbjct: 63  NPPRERESTSTPSLMASSIPAR 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAB8086787.11.7e-0839.13hypothetical protein EE612_010319 [Oryza sativa] >BAS78045.1 Os02g0269400 [Oryza... [more]
KAG5613519.18.5e-0851.19hypothetical protein H5410_024800 [Solanum commersonii][more]
CAA7390606.13.2e-0751.22unnamed protein product [Spirodela intermedia][more]
ERM97025.15.5e-0738.79hypothetical protein AMTR_s00122p00023550 [Amborella trichopoda][more]
EXB78387.19.4e-0744.79hypothetical protein L484_003249 [Morus notabilis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A9EXJ61.0e-1143.31Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9VGG38.9e-1144.63Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A3Q7GC387.5e-1049.47Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1[more]
A0A0P0VHF28.3e-0939.13Os02g0269400 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0269400 PE... [more]
A0A7I8K2R01.6e-0751.22Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_02002068 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G189940.1CcUC10G189940.1mRNA