CcUC10G188530 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G188530
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1
LocationCicolChr10: 2866396 .. 2868754 (+)
RNA-Seq ExpressionCcUC10G188530
SyntenyCcUC10G188530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACCCTCAACCCGTTTCAGTACAATCGTTTCTTGTAGAATTCCCAGATCTCCGCTCTTCTTTCATGGCTTCCGCTTGCCAAAGAATTGCCAGCAGAATCTCGCAATCGTCTTTCAAAACATTCGTTCGTACGAACTCTTCCGCCAAATCTTCATCTTCTCCGTTCCCTCTACCTTCCAAATCCACTGCACCATCTGTTCGCCGATTCTCGCTCGCCAGGTATCTTTCTTTATCCTTTCATTTCTCCTTGTTTTGTATATCTTGTTGTTCTTTGTTTCAATTGCTCGTTGTTCTTTTTCAAACCTTCTGATTCTACTTTTAGGCCTCCGTCGGAGCTGGGATGCGTGCAGTCCCTTTTGCCATTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAACATGAAATATTGTACTTTCTTTTGAAGTGTGAGTAGCTTTTTTATGCATTAATCTATAGATTTTCCCTTTTATTGCTCTACAATTGTTTGTCTATGTCCCTGTATTGGTATTTGTGATTCTTGTTGTCTTTGGGATTCTTGTTGTTGTTCCAAAAATCTTTCAGATTGTGTATGAAATGGAATGTTTCTTGATATTTTAGAAGTTAGTTTAGAAGTTTAGAATGCTGGATTGTTGCTTATACTTAAGGAGGTTGTTGGTCAAGTTATGTAAAAGATGGAAGGCTAAGCTAGAATGTTGAAGTTAATCCTTCTTAGGAAGAGAAACCATCGTAGGTTTGGTCCTTCCCTCTGCCTTCGATATCTAGTTTCATTGTTTATTGGTTTCAAACGTTTGTCCCCCAGTTCAATTGGTCATTTTCCTGAGTAAAATTAGTTACTAGAACTGGAATGGAATGAATGGAATGGCTTTGGTTGTTGACTGGGGACCTTGAAACTGACTGGAGTATTTGGTTCCTGCAGGCACATAATATCAATTTTCAATATACTTGAAAGAAATAGATTGGAAGTTTACGGAGCTTTCCGATTATGGTGCAGTGAATCGATTTCAAGTACGAAACTAATTATCTCAAAGTCATCCTAAAATGTCGAAGATATTCAGATTTCTATTATTGTGAGGAACTAGTGGTCTCTGTCAGTGGTGGGGGTCGGCGCCACTTTTAATTACCATATGAAAAATTAAGTGTCACATACGTTCTCATTCAGCAATAGTCAATTCCTGAATCTTTAAATCTTAAGAGATTCCCTTGGAAACCTTTGACTTGAAGAGCGAACTGCCAAATCTAAGAGAATGGAATGACAAATTAGGTTTGCCCATCAATCAGCTTTGTCTCTGCGATCTAGATATATTATCATCCTGAAAAAAAAAAAATTTATCTCGAAAAAAATTTATTCTATTCTTATGGAGGTCGTTACATTAGAGTAAAGGGATGATCCAGTCCAGTCAAGAGTTTAGTTAATTGTAAATCTGTTATGTGAACTAATCTTTGTTTGTTTGATGATTTGCATCATTTTTGTTTACATCAATTGTGTGTCACTCAGATAATATTATGATTGTTCTTATCATTCGACCCATTAGTTTCTTTTATCAAATAATCTATATGACATAACTTCTCATTGCCCCAGATGCAATTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGGTGGGCCAGTCACTCTATGCTTCACTAATCTAGAAATGTCACTTTGGTGTGTTGTGTAAAGGCTCCGTAGATGTTAGTTCTTAGTGCCTTTGGTTTACCTAATGTAAATTTAATGAAACCCATCTCATGCTCCTTTGTTCTTGTGCCAATACACGCACACCTCGACTAATCTTACGGGACAGCTGTCTAACTCAAGAAAAATCTAGATTACTTGGGAATCATTTATTAGTTGGCATTGTTCACACTATTGTCTTTGCAACTGTAGAAGTAGAACTAGATTGCTGCATCAGTTATATTGAATGAGATATGATGAGTCATGTTGCATTTCTGGACTCGATTCCTGCAGTAGAAATTAACTGATATTCTTAGTCTGTTTTTCTTGTTTTGTATTTGTTTTCTGTGGCTGCAGAGTTAGGTTTATCCGTTCCAAGGTGACTTCTTTGGGCAGATTGTTGCAATGAAAAGGGGATATCAGCAATGGTTTAGTGGATTACTTTTACGAACTGTGACCATTACTGCTCAATTTGGTTAACTAATTTTGATTCTTCCAAACGACAGATTGTGTTGAAATAAGAATATAGTGATTCTAGTTGTCATGGCAATTCAGGATATCATATTTTTGCCATTGTTGTGGGTTATAAATGTTTGATCTGTGTCATAC

mRNA sequence

AAAACCCTCAACCCGTTTCAGTACAATCGTTTCTTGTAGAATTCCCAGATCTCCGCTCTTCTTTCATGGCTTCCGCTTGCCAAAGAATTGCCAGCAGAATCTCGCAATCGTCTTTCAAAACATTCGTTCGTACGAACTCTTCCGCCAAATCTTCATCTTCTCCGTTCCCTCTACCTTCCAAATCCACTGCACCATCTGTTCGCCGATTCTCGCTCGCCAGGCCTCCGTCGGAGCTGGGATGCGTGCAGTCCCTTTTGCCATTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAACATGAAATATTGTACTTTCTTTTGAAGTGCACATAATATCAATTTTCAATATACTTGAAAGAAATAGATTGGAAGTTTACGGAGCTTTCCGATTATGGTGCAGTGAATCGATTTCAAATGCAATTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGAGTTAGGTTTATCCGTTCCAAGGTGACTTCTTTGGGCAGATTGTTGCAATGAAAAGGGGATATCAGCAATGGTTTAGTGGATTACTTTTACGAACTGTGACCATTACTGCTCAATTTGGTTAACTAATTTTGATTCTTCCAAACGACAGATTGTGTTGAAATAAGAATATAGTGATTCTAGTTGTCATGGCAATTCAGGATATCATATTTTTGCCATTGTTGTGGGTTATAAATGTTTGATCTGTGTCATAC

Coding sequence (CDS)

ATGGCTTCCGCTTGCCAAAGAATTGCCAGCAGAATCTCGCAATCGTCTTTCAAAACATTCGTTCGTACGAACTCTTCCGCCAAATCTTCATCTTCTCCGTTCCCTCTACCTTCCAAATCCACTGCACCATCTGTTCGCCGATTCTCGCTCGCCAGGCCTCCGTCGGAGCTGGGATGCGTGCAGTCCCTTTTGCCATTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAA

Protein sequence

MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Homology
[Close]
BLAST of CcUC10G188530 vs. NCBI nr
Match: XP_004147213.1 (uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 4.5e-43
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELGCV 60
           MASACQRIASRISQSSF+TFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLAR PSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

[Close]
BLAST of CcUC10G188530 vs. NCBI nr
Match: XP_008448835.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 3.8e-42
Identity = 97/101 (96.04%), Postives = 99/101 (98.02%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELGCV 60
           MASACQRIASRISQSSF+TFVRTNSSAKSSSS FPLPSKSTAPSVRRFSLAR PSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

[Close]
BLAST of CcUC10G188530 vs. NCBI nr
Match: XP_038903086.1 (protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 3.8e-42
Identity = 95/101 (94.06%), Postives = 99/101 (98.02%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELGCV 60
           MASACQRIASRISQSSF+TFVRTN+SAKSSSSPFPLP+KSTAPSVRRFSLAR PSELGC+
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNTSAKSSSSPFPLPAKSTAPSVRRFSLARSPSELGCI 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCT PGL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTYPGL 101

[Close]
BLAST of CcUC10G188530 vs. NCBI nr
Match: XP_022154046.1 (uncharacterized protein LOC111021400 isoform X1 [Momordica charantia])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 91/101 (90.10%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELGCV 60
           MASAC RIASRISQSSF+  VRT S  KS SSPFPLPSKSTAPSVRRFSLAR PSELGCV
Sbjct: 1   MASACHRIASRISQSSFRAAVRTQSPVKSPSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFHNAVAGARMISCLSTNSRSCRALSQG LCCTSPGL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPGL 101

[Close]
BLAST of CcUC10G188530 vs. NCBI nr
Match: KAA0041077.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK12031.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 97/129 (75.19%), Postives = 99/129 (76.74%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLA--------- 60
           MASACQRIASRISQSSF+TFVRTNSSAKSSSS FPLPSKSTAPSVRRFSLA         
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARYLSFDPFL 60

Query: 61  -------------------RPPSELGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQG 102
                              R PSELGCVQSLLPFH+AVAGARMISCLSTNSRSCRALSQG
Sbjct: 61  SPCFNFFSLLFYEPSLSTVRSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG 120

[Close]
BLAST of CcUC10G188530 vs. ExPASy Swiss-Prot
Match: Q6NNL9 (Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NOXY2 PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 9.3e-07
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELGCV 60
           MAS C R  S+ + S+F++ +   S    S+S F        PS      +RP  +LG +
Sbjct: 1   MASRC-RSLSKPAFSAFRSAMNKPSIRPKSASSF----IGVPPSP---GFSRPIGQLGSL 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLP ++AVA AR+ SCL  +S++ R+L+QG+LC  +PG+
Sbjct: 61  QSLLPLYSAVASARLTSCLGIDSQNSRSLAQGMLCSANPGV 93

[Close]
BLAST of CcUC10G188530 vs. ExPASy TrEMBL
Match: A0A1S3BKM3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490878 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.9e-42
Identity = 97/101 (96.04%), Postives = 99/101 (98.02%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELGCV 60
           MASACQRIASRISQSSF+TFVRTNSSAKSSSS FPLPSKSTAPSVRRFSLAR PSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

[Close]
BLAST of CcUC10G188530 vs. ExPASy TrEMBL
Match: A0A6J1DMJ3 (uncharacterized protein LOC111021400 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021400 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.6e-39
Identity = 91/101 (90.10%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELGCV 60
           MASAC RIASRISQSSF+  VRT S  KS SSPFPLPSKSTAPSVRRFSLAR PSELGCV
Sbjct: 1   MASACHRIASRISQSSFRAAVRTQSPVKSPSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFHNAVAGARMISCLSTNSRSCRALSQG LCCTSPGL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPGL 101

[Close]
BLAST of CcUC10G188530 vs. ExPASy TrEMBL
Match: A0A5A7THI0 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00430 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.2e-38
Identity = 97/129 (75.19%), Postives = 99/129 (76.74%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLA--------- 60
           MASACQRIASRISQSSF+TFVRTNSSAKSSSS FPLPSKSTAPSVRRFSLA         
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARYLSFDPFL 60

Query: 61  -------------------RPPSELGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQG 102
                              R PSELGCVQSLLPFH+AVAGARMISCLSTNSRSCRALSQG
Sbjct: 61  SPCFNFFSLLFYEPSLSTVRSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQG 120

[Close]
BLAST of CcUC10G188530 vs. ExPASy TrEMBL
Match: A0A0A0L1I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019950 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.2e-37
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 1  MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELGCV 60
          MASACQRIASRISQSSF+TFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLAR PSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]
BLAST of CcUC10G188530 vs. ExPASy TrEMBL
Match: A0A6J1EAY8 (uncharacterized protein LOC111430946 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430946 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.0e-36
Identity = 87/101 (86.14%), Postives = 90/101 (89.11%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELGCV 60
           MASAC+RIASRISQSS +T VRTNS  K+SSSPF LP   TAPSVRRFSLAR PSELGCV
Sbjct: 1   MASACRRIASRISQSSIRTVVRTNSPPKASSSPFTLPFNCTAPSVRRFSLARAPSELGCV 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFHNAVAGARMISCLSTNSRSCRALSQG LCCTSP L
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 101

[Close]
BLAST of CcUC10G188530 vs. TAIR 10
Match: AT4G17310.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 103.6 bits (257), Expect = 9.5e-23
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 0 

Query: 1   MASACQRIASRISQSSFKTFVR--TNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELG 60
           MASAC+++ +R S SS K+ +R  T S++ +SS+ F LPS+ T    R FS +R PSELG
Sbjct: 1   MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPT----RHFSFSRCPSELG 60

Query: 61  CVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           CVQSLLP H+ VA AR+ SCLST SRS RALSQG LCCTSP L
Sbjct: 61  CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQGTLCCTSPDL 99

[Close]
BLAST of CcUC10G188530 vs. TAIR 10
Match: AT4G17310.2 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 9.2e-18
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 0 

Query: 1  MASACQRIASRISQSSFKTFVR--TNSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSELG 60
          MASAC+++ +R S SS K+ +R  T S++ +SS+ F LPS+ T    R FS +R PSELG
Sbjct: 1  MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPT----RHFSFSRCPSELG 60

Query: 61 CVQSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          CVQSLLP H+ VA AR+ SCLST SRS RALSQ
Sbjct: 61 CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQ 89

[Close]
BLAST of CcUC10G188530 vs. TAIR 10
Match: AT5G47455.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0 

Query: 7  RIASRISQSSFKTFVRT----------NSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSE 66
          R  SR S SSFK+ +R+          +S A +SS+ F +PSK  A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQG 93
          LGCVQSLLP H+ VA AR+ SCLST SRS RAL+QG
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQG 99

[Close]
BLAST of CcUC10G188530 vs. TAIR 10
Match: AT5G47455.6 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0 

Query: 7  RIASRISQSSFKTFVRT----------NSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSE 66
          R  SR S SSFK+ +R+          +S A +SS+ F +PSK  A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQG 93
          LGCVQSLLP H+ VA AR+ SCLST SRS RAL+QG
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQG 99

[Close]
BLAST of CcUC10G188530 vs. TAIR 10
Match: AT5G47455.7 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0 

Query: 7  RIASRISQSSFKTFVRT----------NSSAKSSSSPFPLPSKSTAPSVRRFSLARPPSE 66
          R  SR S SSFK+ +R+          +S A +SS+ F +PSK  A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQG 93
          LGCVQSLLP H+ VA AR+ SCLST SRS RAL+QG
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQG 99

The following BLAST results are available for this feature:
BLAST of CcUC10G188530 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147213.14.5e-4397.03uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus][more]
XP_008448835.13.8e-4296.04PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo... [more]
XP_038903086.13.8e-4294.06protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X1 [Benincasa hispid... [more]
XP_022154046.11.2e-3890.10uncharacterized protein LOC111021400 isoform X1 [Momordica charantia][more]
KAA0041077.11.3e-3775.19protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK12031.1 protei... [more]
BLAST of CcUC10G188530 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NNL99.3e-0739.60Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3... [more]
BLAST of CcUC10G188530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BKM31.9e-4296.04protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 OS=Cu... [more]
A0A6J1DMJ35.6e-3990.10uncharacterized protein LOC111021400 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A5A7THI06.2e-3875.19Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A0A0L1I65.2e-3796.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019950 PE=4 SV=1[more]
A0A6J1EAY82.0e-3686.14uncharacterized protein LOC111430946 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of CcUC10G188530 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G17310.19.5e-2360.19unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPR... [more]
AT4G17310.29.2e-1858.06unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPR... [more]
AT5G47455.11.0e-1654.17unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G47455.61.0e-1654.17unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G47455.71.0e-1654.17unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33156:SF9OS02G0658300 PROTEINcoord: 1..100
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G188530.1CcUC10G188530.1mRNA