Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCGCACGTGCCATGCTCGTGCTCGTCCTATCCCTTCTTGCTCTTTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCTTCAACCCCTCCGCCGGTTGCGCCGGTTGCACCTCCCCCGATGACACCGCCCCCTGTAGCCTCACCGCCGCCAAGCATCTCAAATCCACCGGCGGCGGCTCCTCCCGCCATCCCACCGATGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGGCCCAGGCCCAGGCCCAATGCCCGACAGCCCACCATCACCTCCAGGGCCAAGTTCAAGCCCAATGTCTCCGCCGTCTCCAGCGTCAGCTCCGTCGCCGCCATCACCTCCGCCGCCGGGCGCGGGATTTTCTATCCACCAGGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTCCTGGTTTAA
mRNA sequence
ATGGCTGCCGCACGTGCCATGCTCGTGCTCGTCCTATCCCTTCTTGCTCTTTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCTTCAACCCCTCCGCCGGTTGCGCCGGTTGCACCTCCCCCGATGACACCGCCCCCTGTAGCCTCACCGCCGCCAAGCATCTCAAATCCACCGGCGGCGGCTCCTCCCGCCATCCCACCGATGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGGCCCAGGCCCAGGCCCAATGCCCGACAGCCCACCATCACCTCCAGGGCCAAGTTCAAGCCCAATGTCTCCGCCGTCTCCAGCGTCAGCTCCGTCGCCGCCATCACCTCCGCCGCCGGGCGCGGGATTTTCTATCCACCAGGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTCCTGGTTTAA
Coding sequence (CDS)
ATGGCTGCCGCACGTGCCATGCTCGTGCTCGTCCTATCCCTTCTTGCTCTTTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCTTCAACCCCTCCGCCGGTTGCGCCGGTTGCACCTCCCCCGATGACACCGCCCCCTGTAGCCTCACCGCCGCCAAGCATCTCAAATCCACCGGCGGCGGCTCCTCCCGCCATCCCACCGATGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGGCCCAGGCCCAGGCCCAATGCCCGACAGCCCACCATCACCTCCAGGGCCAAGTTCAAGCCCAATGTCTCCGCCGTCTCCAGCGTCAGCTCCGTCGCCGCCATCACCTCCGCCGCCGGGCGCGGGATTTTCTATCCACCAGGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTCCTGGTTTAA
Protein sequence
MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPPPGAGFSIHQGGYKAAVAAVLGGLAVVLV
Homology
BLAST of CcUC10G188290 vs. NCBI nr
Match:
XP_038903480.1 (classical arabinogalactan protein 9-like [Benincasa hispida])
HSP 1 Score: 188.7 bits (478), Expect = 3.7e-44
Identity = 135/159 (84.91%), Postives = 140/159 (88.05%), Query Frame = 0
Query: 1 MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVA 60
MA+ARAMLVL LSLLAL SSSIAQSPSPAPGPASAAAPPPS+PP PVA PP TPPP A
Sbjct: 1 MASARAMLVLALSLLALFSSSIAQSPSPAPGPASAAAPPPSSPP---PVAAPPTTPPPAA 60
Query: 61 SPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSP--MSPPSP 120
SPPP+IS PPAAAPPAIPPM+ASPP MESS PGPGPMPDSPPSPPGPS SP MSPP+P
Sbjct: 61 SPPPTISTPPAAAPPAIPPMMASPPSMESS--PGPGPMPDSPPSPPGPSPSPMSMSPPTP 120
Query: 121 ASAPSPPSPPPPGAGFSIHQGGYKAAVAAVLGGLAVVLV 158
A APSPPSPPPP AGFSIHQGGYKAA AAVLGGLAV LV
Sbjct: 121 APAPSPPSPPPPSAGFSIHQGGYKAAAAAVLGGLAVFLV 154
BLAST of CcUC10G188290 vs. NCBI nr
Match:
XP_022923372.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])
HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 119/161 (73.91%), Postives = 129/161 (80.12%), Query Frame = 0
Query: 1 MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVA--PVAPPPMTPPP 60
MA ARAMLVL LSLL+L++S+IAQSPSPAPGPA AAPPP TPPPVA P PPP PP
Sbjct: 1 MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60
Query: 61 V-ASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPS 120
+ ASPPPS+S PP AAPP +PP +ASPP MES P PGP MPDSPPSPPGPS P P+
Sbjct: 61 MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120
Query: 121 PASAPSPPSPPPPGAGFSIHQGGYKAA-VAAVLGGLAVVLV 158
PASAPSPP PPPGAGFSI GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160
BLAST of CcUC10G188290 vs. NCBI nr
Match:
XP_023553563.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 152.9 bits (385), Expect = 2.3e-33
Identity = 122/162 (75.31%), Postives = 131/162 (80.86%), Query Frame = 0
Query: 1 MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVA--PVAPPPMTPPP 60
MA ARAMLVL LSLL+L++S+IAQSPSPAPGPA AAPPP TPPPVA P PPP PP
Sbjct: 1 MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60
Query: 61 V-ASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPS 120
+ ASPPPS+S PP AAPP + P +ASPP MES P PGP MPDSPPSPPGPS P S PS
Sbjct: 61 MAASPPPSMSTPPMAAPPTVLPPMASPPSMESGPSPGPTTMPDSPPSPPGPSPGPSSEPS 120
Query: 121 PASAPS-PPSPPPPGAGFSIHQGGYKAA-VAAVLGGLAVVLV 158
PASAPS PPSPPPPGAGFSI GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 161
BLAST of CcUC10G188290 vs. NCBI nr
Match:
KAG6596882.1 (hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 68.6 bits (166), Expect = 5.6e-08
Identity = 83/156 (53.21%), Postives = 88/156 (56.41%), Query Frame = 0
Query: 1 MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVA 60
MA ARAMLVL L ALSSS+IAQ PS PA+AAAP PSTP PVA P PP A
Sbjct: 1 MATARAMLVLALYFFALSSSAIAQGPS----PAAAAAPRPSTPSPVA----SPAMSPPAA 60
Query: 61 SPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPSPAS 120
SPP IS+ PPM ASPP M S P PMPDSPPS P P
Sbjct: 61 SPPLIISS---------PPMAASPPSMGMS--PVSVPMPDSPPSLPSPG----------- 119
Query: 121 APSPPSPPPPGAGFSIHQGGYKAAVAAVLGGLAVVL 157
P AGFSIH GGYKA +AAVLGG+A VL
Sbjct: 121 -------PGSSAGFSIHHGGYKAGLAAVLGGMAEVL 119
BLAST of CcUC10G188290 vs. NCBI nr
Match:
XP_032830222.1 (basic proline-rich protein-like, partial [Petromyzon marinus])
HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 64/114 (56.14%), Postives = 75/114 (65.79%), Query Frame = 0
Query: 19 SSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVASPPPSISNPPAAAPPAIP 78
SS SP P+P P+S+++PPPS+PPP P +PPP +PPP S PPS P + PP+ P
Sbjct: 243 SSPPPPSPPPSPPPSSSSSPPPSSPPP-PPSSPPPPSPPPPPSSPPSSPPPSSPPPPSSP 302
Query: 79 PMIASPPPMESS--PGPGPGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPPP 131
P +SPPP SS P P P P SPPSPP PS P SPPSP PSPPSPPPP
Sbjct: 303 PPPSSPPPPPSSSPPPPSSSPPPSSPPSPPPPSPPPPSPPSP-PPPSPPSPPPP 354
BLAST of CcUC10G188290 vs. ExPASy TrEMBL
Match:
A0A0A0L458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 124/160 (77.50%), Postives = 132/160 (82.50%), Query Frame = 0
Query: 1 MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVA 60
MA+ARAMLVL+LSLL+LSSSSIAQSPSP+PGPAS AAPPPSTPP PVAPPP TPPP A
Sbjct: 1 MASARAMLVLLLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPP---PVAPPPTTPPPAA 60
Query: 61 SPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGP-MPDSPPSPPGPSSSPMSP--PS 120
SPP SIS PPAAAP A PPM+ASPPPME S P PGP MP+ PPSP PS SPMSP P+
Sbjct: 61 SPPSSISTPPAAAPTATPPMMASPPPMEPSTAPAPGPAMPEGPPSP--PSQSPMSPPGPA 120
Query: 121 PASAPSPPSPPPPGAGFSIHQGGYKAAVAAVLGGLAVVLV 158
PA AP+PPS P AGFSIHQGGY A VAAVLGGLAVVLV
Sbjct: 121 PAPAPTPPSARPRSAGFSIHQGGYMAGVAAVLGGLAVVLV 155
BLAST of CcUC10G188290 vs. ExPASy TrEMBL
Match:
A0A6J1E5X6 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111431090 PE=4 SV=1)
HSP 1 Score: 153.7 bits (387), Expect = 6.5e-34
Identity = 119/161 (73.91%), Postives = 129/161 (80.12%), Query Frame = 0
Query: 1 MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVA--PVAPPPMTPPP 60
MA ARAMLVL LSLL+L++S+IAQSPSPAPGPA AAPPP TPPPVA P PPP PP
Sbjct: 1 MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60
Query: 61 V-ASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPS 120
+ ASPPPS+S PP AAPP +PP +ASPP MES P PGP MPDSPPSPPGPS P P+
Sbjct: 61 MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120
Query: 121 PASAPSPPSPPPPGAGFSIHQGGYKAA-VAAVLGGLAVVLV 158
PASAPSPP PPPGAGFSI GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160
BLAST of CcUC10G188290 vs. ExPASy TrEMBL
Match:
A0A6P9F4J7 (basic proline-rich protein-like OS=Zalophus californianus OX=9704 GN=LOC118356431 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 63/123 (51.22%), Postives = 76/123 (61.79%), Query Frame = 0
Query: 17 LSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVASPPPSISNPPAAAPPA 76
L SSS + SP P+P P+ + PPPS+ P +PPP +PP + SPPPS P ++PP+
Sbjct: 241 LPSSSPSSSPPPSPPPSLPSPPPPSSSP-----SPPPSSPPSLPSPPPS---SPPSSPPS 300
Query: 77 IPPMIASPPPMESSPGPG-------PGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPP 133
PP + SPPP SSP P P P P PPS P SSSP SPPSP S PSPPSPPP
Sbjct: 301 SPPSLPSPPPPSSSPSPPPSSPPSLPSPSPSPPPSSPSSSSSPPSPPSPPSPPSPPSPPP 355
BLAST of CcUC10G188290 vs. ExPASy TrEMBL
Match:
A0A1Y5I1S4 (Patched family-domain-containing protein OS=Ostreococcus tauri OX=70448 GN=BE221DRAFT_207925 PE=4 SV=1)
HSP 1 Score: 55.5 bits (132), Expect = 2.4e-04
Identity = 60/107 (56.07%), Postives = 70/107 (65.42%), Query Frame = 0
Query: 26 PSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVASPPPSISNPPAAAPP-AIPPMIASP 85
PSP P P +PPPS PPP +P PPP +PPP SPPPS S PP++ PP + PP ++SP
Sbjct: 919 PSPPPPPNPPPSPPPSPPPPPSP--PPPPSPPPPPSPPPSPSPPPSSNPPLSSPPPLSSP 978
Query: 86 PPMESSPGPGPGPMPD-SPPSPPGPSSSPMSPPSPASAPSPPSPPPP 131
PP+ SP P P P P SPP P PS SP PPSP+ PSPP PP P
Sbjct: 979 PPLSPSPPPSPPPPPSPSPPPSPPPSPSPPPPPSPSPPPSPPPPPSP 1023
BLAST of CcUC10G188290 vs. ExPASy TrEMBL
Match:
A0A090MAY2 (EF-Hand 1, calcium-binding site OS=Ostreococcus tauri OX=70448 GN=OT_ostta10g00450 PE=4 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 7.0e-04
Identity = 61/108 (56.48%), Postives = 72/108 (66.67%), Query Frame = 0
Query: 25 SPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVASPPPSISNPPAAAPPAI--PPMIA 84
+PSP P P+ +PPPS PPP +P PPP +PPP SPPPS SNPP ++PP + PP ++
Sbjct: 960 APSPPPPPSPPPSPPPSPPPPPSP--PPPPSPPPSPSPPPS-SNPPLSSPPPLSSPPPLS 1019
Query: 85 SPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPPP 131
SPPP S P P P P+P SPP PP P P SP P S P PPSPPPP
Sbjct: 1020 SPPPPSSPPPPSP-PLPPSPPLPPNPPPPP-SPSPPPSPPLPPSPPPP 1062
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038903480.1 | 3.7e-44 | 84.91 | classical arabinogalactan protein 9-like [Benincasa hispida] | [more] |
XP_022923372.1 | 1.3e-33 | 73.91 | classical arabinogalactan protein 9-like [Cucurbita moschata] | [more] |
XP_023553563.1 | 2.3e-33 | 75.31 | classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo] | [more] |
KAG6596882.1 | 5.6e-08 | 53.21 | hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_032830222.1 | 1.0e-04 | 56.14 | basic proline-rich protein-like, partial [Petromyzon marinus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L458 | 1.2e-35 | 77.50 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1 | [more] |
A0A6J1E5X6 | 6.5e-34 | 73.91 | classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
A0A6P9F4J7 | 1.4e-04 | 51.22 | basic proline-rich protein-like OS=Zalophus californianus OX=9704 GN=LOC11835643... | [more] |
A0A1Y5I1S4 | 2.4e-04 | 56.07 | Patched family-domain-containing protein OS=Ostreococcus tauri OX=70448 GN=BE221... | [more] |
A0A090MAY2 | 7.0e-04 | 56.48 | EF-Hand 1, calcium-binding site OS=Ostreococcus tauri OX=70448 GN=OT_ostta10g004... | [more] |
Match Name | E-value | Identity | Description | |