CcUC10G188290 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G188290
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionclassical arabinogalactan protein 9-like
LocationCicolChr10: 2519668 .. 2520141 (-)
RNA-Seq ExpressionCcUC10G188290
SyntenyCcUC10G188290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCGCACGTGCCATGCTCGTGCTCGTCCTATCCCTTCTTGCTCTTTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCTTCAACCCCTCCGCCGGTTGCGCCGGTTGCACCTCCCCCGATGACACCGCCCCCTGTAGCCTCACCGCCGCCAAGCATCTCAAATCCACCGGCGGCGGCTCCTCCCGCCATCCCACCGATGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGGCCCAGGCCCAGGCCCAATGCCCGACAGCCCACCATCACCTCCAGGGCCAAGTTCAAGCCCAATGTCTCCGCCGTCTCCAGCGTCAGCTCCGTCGCCGCCATCACCTCCGCCGCCGGGCGCGGGATTTTCTATCCACCAGGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTCCTGGTTTAA

mRNA sequence

ATGGCTGCCGCACGTGCCATGCTCGTGCTCGTCCTATCCCTTCTTGCTCTTTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCTTCAACCCCTCCGCCGGTTGCGCCGGTTGCACCTCCCCCGATGACACCGCCCCCTGTAGCCTCACCGCCGCCAAGCATCTCAAATCCACCGGCGGCGGCTCCTCCCGCCATCCCACCGATGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGGCCCAGGCCCAGGCCCAATGCCCGACAGCCCACCATCACCTCCAGGGCCAAGTTCAAGCCCAATGTCTCCGCCGTCTCCAGCGTCAGCTCCGTCGCCGCCATCACCTCCGCCGCCGGGCGCGGGATTTTCTATCCACCAGGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTCCTGGTTTAA

Coding sequence (CDS)

ATGGCTGCCGCACGTGCCATGCTCGTGCTCGTCCTATCCCTTCTTGCTCTTTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCTTCAACCCCTCCGCCGGTTGCGCCGGTTGCACCTCCCCCGATGACACCGCCCCCTGTAGCCTCACCGCCGCCAAGCATCTCAAATCCACCGGCGGCGGCTCCTCCCGCCATCCCACCGATGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGGCCCAGGCCCAGGCCCAATGCCCGACAGCCCACCATCACCTCCAGGGCCAAGTTCAAGCCCAATGTCTCCGCCGTCTCCAGCGTCAGCTCCGTCGCCGCCATCACCTCCGCCGCCGGGCGCGGGATTTTCTATCCACCAGGGTGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGCCTGGCCGTCGTCCTGGTTTAA

Protein sequence

MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPPPGAGFSIHQGGYKAAVAAVLGGLAVVLV
Homology
BLAST of CcUC10G188290 vs. NCBI nr
Match: XP_038903480.1 (classical arabinogalactan protein 9-like [Benincasa hispida])

HSP 1 Score: 188.7 bits (478), Expect = 3.7e-44
Identity = 135/159 (84.91%), Postives = 140/159 (88.05%), Query Frame = 0

Query: 1   MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVA 60
           MA+ARAMLVL LSLLAL SSSIAQSPSPAPGPASAAAPPPS+PP   PVA PP TPPP A
Sbjct: 1   MASARAMLVLALSLLALFSSSIAQSPSPAPGPASAAAPPPSSPP---PVAAPPTTPPPAA 60

Query: 61  SPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSP--MSPPSP 120
           SPPP+IS PPAAAPPAIPPM+ASPP MESS  PGPGPMPDSPPSPPGPS SP  MSPP+P
Sbjct: 61  SPPPTISTPPAAAPPAIPPMMASPPSMESS--PGPGPMPDSPPSPPGPSPSPMSMSPPTP 120

Query: 121 ASAPSPPSPPPPGAGFSIHQGGYKAAVAAVLGGLAVVLV 158
           A APSPPSPPPP AGFSIHQGGYKAA AAVLGGLAV LV
Sbjct: 121 APAPSPPSPPPPSAGFSIHQGGYKAAAAAVLGGLAVFLV 154

BLAST of CcUC10G188290 vs. NCBI nr
Match: XP_022923372.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 119/161 (73.91%), Postives = 129/161 (80.12%), Query Frame = 0

Query: 1   MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVA--PVAPPPMTPPP 60
           MA ARAMLVL LSLL+L++S+IAQSPSPAPGPA  AAPPP TPPPVA  P  PPP   PP
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 61  V-ASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPS 120
           + ASPPPS+S PP AAPP +PP +ASPP MES P PGP  MPDSPPSPPGPS  P   P+
Sbjct: 61  MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120

Query: 121 PASAPSPPSPPPPGAGFSIHQGGYKAA-VAAVLGGLAVVLV 158
           PASAPSPP  PPPGAGFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

BLAST of CcUC10G188290 vs. NCBI nr
Match: XP_023553563.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-33
Identity = 122/162 (75.31%), Postives = 131/162 (80.86%), Query Frame = 0

Query: 1   MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVA--PVAPPPMTPPP 60
           MA ARAMLVL LSLL+L++S+IAQSPSPAPGPA  AAPPP TPPPVA  P  PPP   PP
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 61  V-ASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPS 120
           + ASPPPS+S PP AAPP + P +ASPP MES P PGP  MPDSPPSPPGPS  P S PS
Sbjct: 61  MAASPPPSMSTPPMAAPPTVLPPMASPPSMESGPSPGPTTMPDSPPSPPGPSPGPSSEPS 120

Query: 121 PASAPS-PPSPPPPGAGFSIHQGGYKAA-VAAVLGGLAVVLV 158
           PASAPS PPSPPPPGAGFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 161

BLAST of CcUC10G188290 vs. NCBI nr
Match: KAG6596882.1 (hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 5.6e-08
Identity = 83/156 (53.21%), Postives = 88/156 (56.41%), Query Frame = 0

Query: 1   MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVA 60
           MA ARAMLVL L   ALSSS+IAQ PS    PA+AAAP PSTP PVA     P   PP A
Sbjct: 1   MATARAMLVLALYFFALSSSAIAQGPS----PAAAAAPRPSTPSPVA----SPAMSPPAA 60

Query: 61  SPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPSPAS 120
           SPP  IS+         PPM ASPP M  S  P   PMPDSPPS P P            
Sbjct: 61  SPPLIISS---------PPMAASPPSMGMS--PVSVPMPDSPPSLPSPG----------- 119

Query: 121 APSPPSPPPPGAGFSIHQGGYKAAVAAVLGGLAVVL 157
                  P   AGFSIH GGYKA +AAVLGG+A VL
Sbjct: 121 -------PGSSAGFSIHHGGYKAGLAAVLGGMAEVL 119

BLAST of CcUC10G188290 vs. NCBI nr
Match: XP_032830222.1 (basic proline-rich protein-like, partial [Petromyzon marinus])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 64/114 (56.14%), Postives = 75/114 (65.79%), Query Frame = 0

Query: 19  SSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVASPPPSISNPPAAAPPAIP 78
           SS    SP P+P P+S+++PPPS+PPP  P +PPP +PPP  S PPS   P +  PP+ P
Sbjct: 243 SSPPPPSPPPSPPPSSSSSPPPSSPPP-PPSSPPPPSPPPPPSSPPSSPPPSSPPPPSSP 302

Query: 79  PMIASPPPMESS--PGPGPGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPPP 131
           P  +SPPP  SS  P P   P P SPPSPP PS  P SPPSP   PSPPSPPPP
Sbjct: 303 PPPSSPPPPPSSSPPPPSSSPPPSSPPSPPPPSPPPPSPPSP-PPPSPPSPPPP 354

BLAST of CcUC10G188290 vs. ExPASy TrEMBL
Match: A0A0A0L458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 124/160 (77.50%), Postives = 132/160 (82.50%), Query Frame = 0

Query: 1   MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVA 60
           MA+ARAMLVL+LSLL+LSSSSIAQSPSP+PGPAS AAPPPSTPP   PVAPPP TPPP A
Sbjct: 1   MASARAMLVLLLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPP---PVAPPPTTPPPAA 60

Query: 61  SPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGP-MPDSPPSPPGPSSSPMSP--PS 120
           SPP SIS PPAAAP A PPM+ASPPPME S  P PGP MP+ PPSP  PS SPMSP  P+
Sbjct: 61  SPPSSISTPPAAAPTATPPMMASPPPMEPSTAPAPGPAMPEGPPSP--PSQSPMSPPGPA 120

Query: 121 PASAPSPPSPPPPGAGFSIHQGGYKAAVAAVLGGLAVVLV 158
           PA AP+PPS  P  AGFSIHQGGY A VAAVLGGLAVVLV
Sbjct: 121 PAPAPTPPSARPRSAGFSIHQGGYMAGVAAVLGGLAVVLV 155

BLAST of CcUC10G188290 vs. ExPASy TrEMBL
Match: A0A6J1E5X6 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111431090 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 6.5e-34
Identity = 119/161 (73.91%), Postives = 129/161 (80.12%), Query Frame = 0

Query: 1   MAAARAMLVLVLSLLALSSSSIAQSPSPAPGPASAAAPPPSTPPPVA--PVAPPPMTPPP 60
           MA ARAMLVL LSLL+L++S+IAQSPSPAPGPA  AAPPP TPPPVA  P  PPP   PP
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 61  V-ASPPPSISNPPAAAPPAIPPMIASPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPS 120
           + ASPPPS+S PP AAPP +PP +ASPP MES P PGP  MPDSPPSPPGPS  P   P+
Sbjct: 61  MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120

Query: 121 PASAPSPPSPPPPGAGFSIHQGGYKAA-VAAVLGGLAVVLV 158
           PASAPSPP  PPPGAGFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

BLAST of CcUC10G188290 vs. ExPASy TrEMBL
Match: A0A6P9F4J7 (basic proline-rich protein-like OS=Zalophus californianus OX=9704 GN=LOC118356431 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 63/123 (51.22%), Postives = 76/123 (61.79%), Query Frame = 0

Query: 17  LSSSSIAQSPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVASPPPSISNPPAAAPPA 76
           L SSS + SP P+P P+  + PPPS+ P     +PPP +PP + SPPPS    P ++PP+
Sbjct: 241 LPSSSPSSSPPPSPPPSLPSPPPPSSSP-----SPPPSSPPSLPSPPPS---SPPSSPPS 300

Query: 77  IPPMIASPPPMESSPGPG-------PGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPP 133
            PP + SPPP  SSP P        P P P  PPS P  SSSP SPPSP S PSPPSPPP
Sbjct: 301 SPPSLPSPPPPSSSPSPPPSSPPSLPSPSPSPPPSSPSSSSSPPSPPSPPSPPSPPSPPP 355

BLAST of CcUC10G188290 vs. ExPASy TrEMBL
Match: A0A1Y5I1S4 (Patched family-domain-containing protein OS=Ostreococcus tauri OX=70448 GN=BE221DRAFT_207925 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-04
Identity = 60/107 (56.07%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 26   PSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVASPPPSISNPPAAAPP-AIPPMIASP 85
            PSP P P    +PPPS PPP +P  PPP +PPP  SPPPS S PP++ PP + PP ++SP
Sbjct: 919  PSPPPPPNPPPSPPPSPPPPPSP--PPPPSPPPPPSPPPSPSPPPSSNPPLSSPPPLSSP 978

Query: 86   PPMESSPGPGPGPMPD-SPPSPPGPSSSPMSPPSPASAPSPPSPPPP 131
            PP+  SP P P P P  SPP  P PS SP  PPSP+  PSPP PP P
Sbjct: 979  PPLSPSPPPSPPPPPSPSPPPSPPPSPSPPPPPSPSPPPSPPPPPSP 1023

BLAST of CcUC10G188290 vs. ExPASy TrEMBL
Match: A0A090MAY2 (EF-Hand 1, calcium-binding site OS=Ostreococcus tauri OX=70448 GN=OT_ostta10g00450 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.0e-04
Identity = 61/108 (56.48%), Postives = 72/108 (66.67%), Query Frame = 0

Query: 25   SPSPAPGPASAAAPPPSTPPPVAPVAPPPMTPPPVASPPPSISNPPAAAPPAI--PPMIA 84
            +PSP P P+   +PPPS PPP +P  PPP +PPP  SPPPS SNPP ++PP +  PP ++
Sbjct: 960  APSPPPPPSPPPSPPPSPPPPPSP--PPPPSPPPSPSPPPS-SNPPLSSPPPLSSPPPLS 1019

Query: 85   SPPPMESSPGPGPGPMPDSPPSPPGPSSSPMSPPSPASAPSPPSPPPP 131
            SPPP  S P P P P+P SPP PP P   P SP  P S P PPSPPPP
Sbjct: 1020 SPPPPSSPPPPSP-PLPPSPPLPPNPPPPP-SPSPPPSPPLPPSPPPP 1062

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038903480.13.7e-4484.91classical arabinogalactan protein 9-like [Benincasa hispida][more]
XP_022923372.11.3e-3373.91classical arabinogalactan protein 9-like [Cucurbita moschata][more]
XP_023553563.12.3e-3375.31classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo][more]
KAG6596882.15.6e-0853.21hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_032830222.11.0e-0456.14basic proline-rich protein-like, partial [Petromyzon marinus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4581.2e-3577.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1[more]
A0A6J1E5X66.5e-3473.91classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6P9F4J71.4e-0451.22basic proline-rich protein-like OS=Zalophus californianus OX=9704 GN=LOC11835643... [more]
A0A1Y5I1S42.4e-0456.07Patched family-domain-containing protein OS=Ostreococcus tauri OX=70448 GN=BE221... [more]
A0A090MAY27.0e-0456.48EF-Hand 1, calcium-binding site OS=Ostreococcus tauri OX=70448 GN=OT_ostta10g004... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G188290.1CcUC10G188290.1mRNA