CcUC10G187770 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G187770
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	LSD1 zinc finger family protein
Location	CicolChr10: 1776607 .. 1784299 (-)
RNA-Seq Expression	CcUC10G187770
Synteny	CcUC10G187770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAATGAGAAGGGACTTGGAGGCCCAAATGAACAAGGCCTCATTTTTGAGCCCATGGCTATTGTTTGAAACGACGTCGTAAGGAGCAGCTCTGCTCCTATTTGTTCCAGCGCTCCGCTCGTCGTTCTTGGCGGAATCAGAGGTTTTTCAGAGCAGATAGCTCCATTTCTTCACTCCGTTCCCTGGTTATCGAAAGTAAAAACCCTTAACGTTTATACATCTTTTTATGTTTCCAATTTCTAATTTCCTTTTCTGGGTAATGAGTCTTGATCATGGTCACTGCTTAAAGCTGGGTTGGATTGGATTTCTGATTCACTGTTTTCTTGCACTTTAAATTCTCTCGTTCTTTCTGTTGTGGGTTTCTCTTGTTTTTGGATTTTGATTCAAGAGTATGGTGGGCGCATGTTTGTTAGTCGTACCAAGTTGTTTTCACTTTGGTGTTATTGGGTTTATGCAATGAAGCATCCTTATGAAATTAAATGGAAAGAAAAACAATCCATTTACATTACTACAGTTGTGTTCAATATGTCTTTGTTTGTTACTATGCTTAACTAACAATAGTTTGTTTTGATCACTTAGGACCTGTTTGGTAACGATTTTGTTTCCGGAAATTTTAGTGAAAATTTCTAAGGTAAAAAGAAAACAAGTTCTTAACAAAATGCTACTCTTTTTGTAATGTGACTAAGATTTCAAATATATTTTACGAATGTGATGAGATAGTAAAGTTTACATAATATATGTTATTTTAGAAGCTTAATTTTCTTAAATAGGAAACTTGACACAAAATTGTTTTCAAACTGAATCTTAGTTGTGTAATTTTTTATTTGAAGTATCATCAATCTTTTCTTTAGATTTTGTTTCCAGAATAGACCAGCATTATGGAAGAAAGTAAAAACCATCTTTCTGAACAAAGTACAAAGGGGTTTGCTAAGAACACCAAGGATAAAAAACTAAATGTGTATGTGTGGGACATGGATGAGACCATCATCCTGCTCAAGTCCTTGTTGAATGGGACATATGCTGAGGCTTTTTGTGGTTCAAAGGATGTTAAAAAGGGTGAAGAACTTGGCAAAATTTGGGAGAAGCAGATTCTTGATCTGTGTGATCATCACTTCTACTATGAACAAGTAAGGTTGAGATTTCACCAGATAATCATGTTCAATTATATAATGTCTCAGAAGTTCATGTCATTATCATATTTTTATGCAGATAGAAAACTATAATCAGCCATTTCTTGATGTGTTGAGTGAATATGACGATGGTCGCGATCTTTCTAATTATGATTTTGATCAAGATGGTTTTGGTCCACCATGTGATGATGGAAACAAAAGAAAATTGGCTTTTAGGCAACGTGTTATAGCCAATAAGTACAGAGAGGTATTGGAGAGTTATTATGTTTTCATGCTTGACTTTTTTATACTGCTGTGACTGTGACTTCCTGCACCACAGGGATTTTCCATACTAGAAAGAGAATGATGTCTAGGCTTTGCTTCTTCTTTCCTTCACAGCTCTTAAAAGTATTCCTAACTTATTTCCCGTTTCTTGTTGCTGGAAGCCTTTAGTATTTTCTGTAGTTTCTGATGTTCAAATTTATTCTGGATGGGTGCTGTAAAAGTCTTTTGGATGGTCTTTTACGCATACATTATGGGGGAAAATTAAAATTTTACCCTTATACCTGGTCCATTGAATCAAAACTTAAGCTTTTGACTTCTTTAACCCTAAATTTGGATAAGTGGTGAAATTTATACCTTCAATTAGTTAAGTTTCTAGTTTTCTGGACAAAATTATTTTTGTGAGTATCGTTTTTTCTAGTCATGTTTGATGTTTTTTTTACTAGATTTGAGCATTTAATTGCTAGGTTTAGGCATTTATGTGGCTTGATTTAAAACAAGAGAGCTTTAATACACTACTATATCATATGTTTATGCATTTAAACTGGATGTTTGTGGGGGTGAAAAAGGTAGAGAGCTACCGTCAAAGGGATCTTTAACTTTTGGTTTTTCCTTCTGGGGATGTGCTTCTTTTCCGTTTGCTCTTCCAGGGCCTGCAGAATATCTTTGATCAACAGAAGATGAAGCTCTGGGAAGAGTTATATGAAATGACTGATGTCTATACTGATAGATGGTTTTCCTCAGGTATTCTATTTATTATGATGAAGCTTTGAGCCATTTGATGCCCCCTTCTGATGATTCAATACACTTGCATACTTGCACAATTCATGTCATTTTCTTTTATGAGGAGATAGACAATGTCATGAAAAAGGATTATAATTTTAGTAAACTACATTATCCTAAATGGTTGAACTTTGCGTTGGAGGTAACTACTTGGATTTCTTACCGCTCCTCTATGTTTTTTTTTTTTTTTTTTTTGATATCCGTGAGTGTCCAGGCCAGCTTACGCGCACCTCAACTAATCTCACGGGACAACCCGCTAGACCCTACAACATTTGGGTGTCAAGGAAACTCATAGGAAATTAATTCCTAGGTAGGTGGCAATCATGGATTGAACCCTTGACCTCTTAGTCATTTATTGAGACTGCTCCTTTTTACCACTAGGCCAACCCATGATGGTTTACCCCTCCTCTATGTTAACTCCATGATCATTGGGATCTGAAGTCCGAGTCTGATTGTTGAGGAAATCTTGCATAGTAGTTGACAATTGGGTGTCAGCTAGCATACTAAACTACATCTGATATTTGTACAGTATTTTTAGTAGCCAACTACCTATCCTTATAACTCTTGTAACTGTGCTTTACAATTTATATGCTATAGTGTACTTAATCCTCTGGCTAAAGTTTTTTTCGCTTCTCTAAATACCTGCTAATGATCACTCTTATTTTCTGCCATTCAAGCACGAGCTTTCTTGGAGGAGTGTTCATTTTCAGATAAACGACCACTTGCGTCTGCTGATCAGACACGTAACAGTACTTCTAGAAGTTCTCAGCATGTTAATGTCTTAGTGACTTCTGGTGCATTGATACCCAGCCTTGTGAAATGCTTACTATTTCGACTCGATCATCTAATAACACCTGGAAATGGTGAGTTATTCAATTTTTAATTTCTCTTCTTGATGTTTTTTCAACCATATTTTTAGAGTCAACTTCTAGACAAATGCCTCGTTTCTTTGGAACTGGTGAACTTGTTTACAAAATTGTCTTAATTATCAACTTCAAATTGATTGCTTTTCAGTCTACAGTTCATGGGAAGTAGGCAAACTACAATGTTTCCAGTGGATCAAGGAGCGTTTTGACAAGTCAAATGTTCGTTTCTGCGCAATAGGCGATGGATGGGAAGAGTGTGAAGCTGCACAGTCCTTGAAATGGCCATTTGTTAAGATTGATCTGCAACCTGGAAGTCCTCACAGGTTTCCCGGTCTGTCTTTGAAAACATTAGGCTTTTACTTCTCTGTTATTTATGGTAACTCTGATTCATCAAGTGATGAGGAATAGTTCACATAATCTACAACAGATAAGCTGTCATTTTCCAGGCTTTAACTCTGTTGTTTTGAGTTACAACAGTTACATATTATGGCTGTCATTTATGTTAAATAATTGTATGTAATCAAAATTATTAGCCGGCCATAATAAGGCCGTATTTTCCCTCCATAATTGTACTGTACCTTTAATCAGAGAATTCAGTGAAACTCACTGGTTTTTTCTCCTGCTTGTCTTGTTCAGTCTTCAGTGGCTGTAACTTTATGGGAATATGAAACTTGGTTATCTTAAGTTGCTTTTTGCATTTGGGATGAGCTAAATTTAAGTTTTGAGGTTTCTAGTTTTCTTCAAAACATTGCTTGTATTTGAATGGTTTCATTGGAGTCAAACTTGTTATTAATGACTGTCTTATCTGCAATTTCATGAAGTCATTTTGTTCATCATTGTGGAGTTGCCCTCCCTCATGCTTTCTTTTAAAGATTAAAACATCTTAGCATTCAGATTGACTAACCTAGTAGGCAACATGTCACCATCCTAACCACATTTCAACAATGAAGTGGTGAGAAGTCCTCATCAACATATAATACACCCACTGCAATCTGACAGCCTGATCTATGAAGGGGAGAAAATGATATTACAGTGGCATTGACAGTGGTACTGATTTTATTTATTTAATTTTTGTAATCGTCTTATTGAGGTCCTACTACTTGCATTATGCTCCCTCCTCCTTTAGTGAGGCTTCACCCACCTCAACACCAACTCTAACTAACAATTTCTTACCAAGTTTTCAACTTGGAAGGTCTCTCTAAACATCTCAAACCCTTACATTAGGACATTCCTTCGAGTCATTGGTCTAATACTTTTAATCAACAGTTAATAATCAGTTAATGTACGAGGTGATATTTAACCATTACAAATTATGGACAAATATTTAGATCCATTTGAAAACTGGAATAAAAACAAGTGGACAATCTTATTAGTTCATTAAGAAAGAAGAAGGTACATTATTATTACTACTATTCTATCTTCCTCCTTTTTCCTCCTACCATTGCCATGTTTATCAGTGTCAACTTTTTGGAGGGAGGGATTTTCCTTTTCAAAGTGGTTCTAATGTCAAAGTACTAACTCCCATAAACCTACATTTACTGCAAGCTGCAGAGGTAAATGCCATTTGCCAAGGTCATTGGTTCTTTCATCCAGTTTTCTTTTGCTTTCATTTCATACGTTAGCTCACATCATTTTTTTTTCCCTAAGCAGTTCTTCCATATCCAGAGATGGTAGGGACGAAGACAAAGCACGATGTCGTCTTTGCCTGAGAAACTGAGTTTTGAAGAAATTCTGCAGGAAAGAAGTTTCTCCAACATCACAAAAATGCCATTTCCTCCAGTTACTTGTATGACTACACTACCCCAAAACTTCAAGTTTGGATCTAATTTGAATTGTTTTCCTGTATAGATCTGAGAATAACTAACAAATTTCTAATGTGAGATGGTTATTTTTGTTTGTATATGAGCACTAGGGAGAGAACTCTCAACATGAACAATGAAGTTTAGGGAGAGAATTTGACATTCATATAATTGAAGTTAGACCCTTTTCTTAGTTTTATTGTATCTTTTGCTCTTATGTCTCATTGTACTGAGCTTTTGTCTCTTTCATTTCATCAATGAAGGTTTATGTTTCTGTTTCGGAATAAAAAAAGTTAGATCCTATTCTTAGAAAAATGACCAACTAATGAATTGATTTCACGTCATAATACTATCTTTTAAGAACTGAAACTTGTTGGGCAATAGGTTGTCAAAGCCAAATAGTCTGCTCTGGATGTAAAAATCTGTTGATGTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGTTGTATCTCCTGTGCCAACCTCTGGTTTGTTTCTATATCCTTCCATTTTTCTTTTGATCTTTTTTGAAATTATGCTTTGATCATAATTCAAATCAAAATCTTTTTTCTCAAATTCTAGTGCAATTAGAATAGTTAAAAAGGGTTGCGATTTTATCTATTCCAACTCTAATTCCCACCCCTCCTTTCACCTTTTTTGTTCTGAAAAGTGAAAACATCTTCTTAAAATAAGGAATCCTCTCATTAGTTTTTTATGCTATAGTTAATGCCAAATCGCTCTCCCTTTTCATCACTTTTAGCTTTTCAATGGGAGAAATCTTTTGTAATTGTCCCTTTTCGAGTTTTCCCCTTCTATTGTAATTTCATTCTCAAACTGTTTTGAAGTGATAAGCTCAAACCCAGTTCGAATTACTTGGGAAGTTGAACTCTGACTATCTTTGCATCTATCGTCAATCTTATTAGTTGTTGTCTCCACCGGTTGTAGAGTAAAGAAAGGGCGGAAGTAATGAGGTTGTTACTAAATCTTGTAGAGTCAGGTGGTTGAGTTAGCCTAGATATCCAGAATTATCAACAAAACAAGTTAACTAATGATGATTTGCAAGTTCTTATATTGTTCGTATATATGCTTGGAATTGTGTATAGTTAGAATATGATTGGTTTGGAATATGACCCTTAAGCAGGCTTAATGATGGCTCGGCTGGTATGCAGTGGCTGCCACACCCTGCTCATGTACAGGCGCGGGGCGAGAAGTGTACAATGTTCTTGTTGTCGCACTGTAAATGCAGCCTCCAAAGGTAAATTGTGACAACTAAAGGTTTACATATGTATTTTTTCTTTAGTGAAGAGCAATACTTTTGTTTGATTTACCTTAAAACCACTCATCAAGAAGCCTATTTGTGATCATAGGAATAGTTTACAATTAAGTTTTACCCATGCTTTATGCTTTTTGTGTTATCATAGGAATAGTTTTAATTTCTTTGCATCCAAATGGACTATCATGGAGCTATAGTAGCACGCCTTCGAAACCTTAGATTTACCTTAAAACCACTCATCAAGAAGCCTATTTGTGATATCTTTGACAAGGCACCAAGATAAAATACACTTCCACTAAATTAAAGACCATCTGTAAAGAGGCCAATTTGTAGTGAACCAGCAAATATCTTGAAGCTATTATTTGACGCTCCAAATGACCAAACATGGAGATCTCTGTTTTTGGACTCCGTTGCTCTTCAAGATAATAAAAAATTACTTTCCCTGTCCATGGATATAATAGCTAACACATCGTTAGTGAACTATGTAAATCTATGCGTCGATTTTTTCTTGTTTGCTTCTTTGCTTGTCGGCTGTTTTTGTCATAACATGTAGAATAGTTTAAAAAAAGAAAAAAAACATGTAGAATACTTCACTTCTTGTAGAATCATATAAGAATAATAGGGTGCGTCAAACACTCAATGTGCTGCACATGTAGCTCAAATGTGTTAAATGGGCACAAATAGATGAAACTTTGGACTTACAATTTGGAACTATAGACAATTATTTTTATCATTAAGAGATGCAAGGTATAATCAAGCAGGGAACTGAATTCTAAGCATTAAATTTCATTCTTGATTATTAAGACAATCCTTTGTTGTTGAGTCTTTTTAGCTAGAGATAGGGTAAATCCAGGAAAGAGTTTTAATAAATATATATCCTGAGTAAAGAGTATATTGTATCAAATTATTTGTGTACATAAAATCTTATGATGGGGAAGGGGAATGTTTTAAAATTTGGTCCTCCAATTGGTACTACTGATGGTTTAATCTAATCTCCTCAAAGGCTTATTATGAATGTTGGATTTTGAATGGTTGCAAACAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGGGTGCTGCTGATGTACCAATGTGGGGCACATTCTGTTAAATGTACACTTTGCAATTTTGTGACCTCAGTTGGGATTTTGAGGTTTAATTAGTTCACAATTTTCCCTTTTTGTCTCGAACTTCACAGCACTTGGATCAATGAAGATGAACCCTAAAAGTATCAACACTTTCTATTGGTTCCTAATGAAAAGAAATCTCTTTTAATTAGGATCAAGGCTGTTTGTACCCAATGTCTATTCTAATTTGAGATTTTCTTTTCTCCGTAAACAAGTGTTTTTTTTTTACTCTAATAACTATGAGACGAGAGATTTAACCTCTCACTTCAAAAGAGGGAGCTACCTAATTGTAAGAGAGAGCTTTAATGTTTTTCTTTCATGTCTCTAAATTTACGGGACTGTTTAGCGTGCTAAATTGAGTTCATATGTTTGTGTAGTTTATATATTTATAGAATTCATTTGTTTGTGTTTTGGATGTTGAGTTCATATGTCAGGG

mRNA sequence

AATAAATGAGAAGGGACTTGGAGGCCCAAATGAACAAGGCCTCATTTTTGAGCCCATGGCTATTGTTTGAAACGACGTCGTAAGGAGCAGCTCTGCTCCTATTTGTTCCAGCGCTCCGCTCGTCGTTCTTGGCGGAATCAGAGGTTTTTCAGAGCAGATAGCTCCATTTCTTCACTCCGTTCCCTGGTTATCGAAAATTTTGTTTCCAGAATAGACCAGCATTATGGAAGAAAGTAAAAACCATCTTTCTGAACAAAGTACAAAGGGGTTTGCTAAGAACACCAAGGATAAAAAACTAAATGTGTATGTGTGGGACATGGATGAGACCATCATCCTGCTCAAGTCCTTGTTGAATGGGACATATGCTGAGGCTTTTTGTGGTTCAAAGGATGTTAAAAAGGGTGAAGAACTTGGCAAAATTTGGGAGAAGCAGATTCTTGATCTGTGTGATCATCACTTCTACTATGAACAAATAGAAAACTATAATCAGCCATTTCTTGATGTGTTGAGTGAATATGACGATGGTCGCGATCTTTCTAATTATGATTTTGATCAAGATGGTTTTGGTCCACCATGTGATGATGGAAACAAAAGAAAATTGGCTTTTAGGCAACGTGTTATAGCCAATAAGTACAGAGAGGGCCTGCAGAATATCTTTGATCAACAGAAGATGAAGCTCTGGGAAGAGTTATATGAAATGACTGATGTCTATACTGATAGATGGTTTTCCTCAGGCCAGCTTACGCGCACCTCAACTAATCTCACGGGACAACCCGCTAGACCCTACAACATTTGGGTGTCAAGGAAACTCATAGGAAATTAATTCCTAGCACGAGCTTTCTTGGAGGAGTGTTCATTTTCAGATAAACGACCACTTGCGTCTGCTGATCAGACACGTAACAGTACTTCTAGAAGTTCTCAGCATGTTAATGTCTTAGTGACTTCTGGTGCATTGATACCCAGCCTTGTGAAATGCTTACTATTTCGACTCGATCATCTAATAACACCTGGAAATGTCTACAGTTCATGGGAAGTAGGCAAACTACAATGTTTCCAGTGGATCAAGGAGCGTTTTGACAAGTCAAATGTTCGTTTCTGCGCAATAGGCGATGGATGGGAAGAGTGTGAAGCTGCACAGTCCTTGAAATGGCCATTTGTTAAGATTGATCTGCAACCTGGAAGTCCTCACAGGTTTCCCGGTCTGTCTTTGAAAACATTAGGCTTTTACTTCTCTGTTATTTATGGTAACTCTGATTCATCAAGTGATGAGGAATAGTTCACATAATCTACAACAGATAAGCTGTCATTTTCCAGGCTTTAACTCTGTTGTTTTGAGTTACAACAGTTACATATTATGGCTGTCATTTATGTTAAATAATTGTATGTAATCAAAATTATTAGCCGGCCATAATAAGGCCGTATTTTCCCTCCATAATTGTACTGTACCTTTAATCAGAGAATTCAGTGAAACTCACTGGTTTTTTCTCCTGCTTGTCTTGTTCAGTCTTCAGTGGCTGTAACTTTATGGGAATATGAAACTTGGTTATCTTAAGTTGCTTTTTGCATTTGGGATGAGCTAAATTTAAGTTTTGAGGTTTCTAGTTTTCTTCAAAACATTGCTTGTATTTGAATGGTTTCATTGGAGTCAAACTTGTTATTAATGACTGTCTTATCTGCAATTTCATGAAGTCATTTTGTTCATCATTGTGGAGTTGCCCTCCCTCATGCTTTCTTTTAAAGATTAAAACATCTTAGCATTCAGATTGACTAACCTAGTAGGCAACATGTCACCATCCTAACCACATTTCAACAATGAAGTGGTGAGAAGTCCTCATCAACATATAATACACCCACTGCAATCTGACAGCCTGATCTATGAAGGGGAGAAAATGATATTACAGTGGCATTGACAGTGGTACTGATTTTATTTATTTAATTTTTGTAATCGTCTTATTGAGGTCCTACTACTTGCATTATGCTCCCTCCTCCTTTAGTGAGGCTTCACCCACCTCAACACCAACTCTAACTAACAATTTCTTACCAAGTTTTCAACTTGGAAGGTCTCTCTAAACATCTCAAACCCTTACATTAGGACATTCCTTCGAGTCATTGGTCTAATACTTTTAATCAACAGTTAATAATCAGTTAATGTACGAGGTGATATTTAACCATTACAAATTATGGACAAATATTTAGATCCATTTGAAAACTGGAATAAAAACAAGTGGACAATCTTATTAGTTCATTAAGAAAGAAGAAGGTACATTATTATTACTACTATTCTATCTTCCTCCTTTTTCCTCCTACCATTGCCATGTTTATCAGTGTCAACTTTTTGGAGGGAGGGATTTTCCTTTTCAAAGTGGTTCTAATGTCAAAGTACTAACTCCCATAAACCTACATTTACTGCAAGCTGCAGAGGTAAATGCCATTTGCCAAGGTCATTGGTTCTTTCATCCAGTTTTCTTTTGCTTTCATTTCATACGTTAGCTCACATCATTTTTTTTTCCCTAAGCAGTTCTTCCATATCCAGAGATGGTAGGGACGAAGACAAAGCACGATGTCGTCTTTGCCTGAGAAACTGAGTTTTGAAGAAATTCTGCAGGAAAGAAGTTTCTCCAACATCACAAAAATGCCATTTCCTCCAGTTACTTGTTGTCAAAGCCAAATAGTCTGCTCTGGATGTAAAAATCTGTTGATGTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGTTGTATCTCCTGTGCCAACCTCTGGCTTAATGATGGCTCGGCTGGTATGCAGTGGCTGCCACACCCTGCTCATGTACAGGCGCGGGGCGAGAAGTGTACAATGTTCTTGTTGTCGCACTGTAAATGCAGCCTCCAAAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGGGTGCTGCTGATGTACCAATGTGGGGCACATTCTGTTAAATGTACACTTTGCAATTTTGTGACCTCAGTTGGGATTTTGAGGTTTAATTAGTTCACAATTTTCCCTTTTTGTCTCGAACTTCACAGCACTTGGATCAATGAAGATGAACCCTAAAAGTATCAACACTTTCTATTGGTTCCTAATGAAAAGAAATCTCTTTTAATTAGGATCAAGGCTGTTTGTACCCAATGTCTATTCTAATTTGAGATTTTCTTTTCTCCGTAAACAAGTGTTTTTTTTTTACTCTAATAACTATGAGACGAGAGATTTAACCTCTCACTTCAAAAGAGGGAGCTACCTAATTGTAAGAGAGAGCTTTAATGTTTTTCTTTCATGTCTCTAAATTTACGGGACTGTTTAGCGTGCTAAATTGAGTTCATATGTTTGTGTAGTTTATATATTTATAGAATTCATTTGTTTGTGTTTTGGATGTTGAGTTCATATGTCAGGG

Coding sequence (CDS)

ATGTCGTCTTTGCCTGAGAAACTGAGTTTTGAAGAAATTCTGCAGGAAAGAAGTTTCTCCAACATCACAAAAATGCCATTTCCTCCAGTTACTTGTTGTCAAAGCCAAATAGTCTGCTCTGGATGTAAAAATCTGTTGATGTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGTTGTATCTCCTGTGCCAACCTCTGGCTTAATGATGGCTCGGCTGGTATGCAGTGGCTGCCACACCCTGCTCATGTACAGGCGCGGGGCGAGAAGTGTACAATGTTCTTGTTGTCGCACTGTAAATGCAGCCTCCAAAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGGGTGCTGCTGATGTACCAATGTGGGGCACATTCTGTTAAATGTACACTTTGCAATTTTGTGACCTCAGTTGGGATTTTGAGGTTTAATTAG

Protein sequence

MSSLPEKLSFEEILQERSFSNITKMPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTLLMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVGILRFN

Homology

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BLAST of CcUC10G187770 vs. NCBI nr
Match: KAE8650032.1 (hypothetical protein Csa_010851 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 4.8e-65
Identity = 120/134 (89.55%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 16  ERSFSNITKMPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMAR 75
           +RSF NITKMPFPPVTCCQ+QI+CSGCKNLL+YPAGATSICCALCH V+PVPTSGL MAR
Sbjct: 369 KRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMAR 428

Query: 76  LVCSGCHTLLMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCT 135
           LVCSGC+TLLMY RGA+SVQCSCCRT+NAAS+ANQMAHINCGNCRVLLMYQC AHSVKCT
Sbjct: 429 LVCSGCYTLLMYSRGAKSVQCSCCRTINAASEANQMAHINCGNCRVLLMYQCEAHSVKCT 488

Query: 136 LCNFVTSVGILRFN 150
           LCNFVTSVGILRFN
Sbjct: 489 LCNFVTSVGILRFN 502

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BLAST of CcUC10G187770 vs. NCBI nr
Match: XP_008448703.1 (PREDICTED: protein LOL1 isoform X1 [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 4.9e-62
Identity = 116/132 (87.88%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 16  ERSFSNITKMPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMAR 75
           +RSF NITKMPFP VTCCQ+QI+CSGCKN+L+YPAGATSICCALCH V+PVPTSGL MAR
Sbjct: 42  KRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMAR 101

Query: 76  LVCSGCHTLLMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCT 135
           LVCSGC+TLLMY RGA SVQCSCCRT+NAASKANQMAH NCGNCRVLLMYQC AHSVKCT
Sbjct: 102 LVCSGCYTLLMYSRGATSVQCSCCRTINAASKANQMAHTNCGNCRVLLMYQCEAHSVKCT 161

Query: 136 LCNFVTSVGILR 148
           LCNFVTSVGILR
Sbjct: 162 LCNFVTSVGILR 173

[Close]

BLAST of CcUC10G187770 vs. NCBI nr
Match: XP_031738784.1 (protein LSD1 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 4.2e-61
Identity = 113/125 (90.40%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 25  MPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTL 84
           MPFPPVTCCQ+QI+CSGCKNLL+YPAGATSICCALCH V+PVPTSGL MARLVCSGC+TL
Sbjct: 1   MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60

Query: 85  LMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG 144
           LMY RGA+SVQCSCCRT+NAAS+ANQMAHINCGNCRVLLMYQC AHSVKCTLCNFVTSVG
Sbjct: 61  LMYSRGAKSVQCSCCRTINAASEANQMAHINCGNCRVLLMYQCEAHSVKCTLCNFVTSVG 120

Query: 145 ILRFN 150
           ILRFN
Sbjct: 121 ILRFN 125

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BLAST of CcUC10G187770 vs. NCBI nr
Match: XP_038903355.1 (protein LSD1-like [Benincasa hispida])

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-56
Identity = 108/121 (89.26%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 25  MPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTL 84
           MPFPPVTCC++ IVCSGCK LL+YPAGAT ICCALCH VSPVPTSGL MARLVCSGCHTL
Sbjct: 1   MPFPPVTCCENHIVCSGCKILLIYPAGATFICCALCHTVSPVPTSGLTMARLVCSGCHTL 60

Query: 85  LMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG 144
           LMY RGA SVQCSCCRTVNAAS+ANQMAHINCGNCRV+LMYQ GAHSVKCTLCNFVTSVG
Sbjct: 61  LMYSRGATSVQCSCCRTVNAASEANQMAHINCGNCRVVLMYQFGAHSVKCTLCNFVTSVG 120

Query: 145 I 146
           I
Sbjct: 121 I 121

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BLAST of CcUC10G187770 vs. NCBI nr
Match: XP_008448702.2 (PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900659.1 PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900660.1 PREDICTED: protein LSD1 isoform X2 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 109/136 (80.15%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 25  MPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTL 84
           MPFP VTCCQ+QI+CSGCKN+L+YPAGATSICCALCH V+PVPTSGL MARLVCSGC+TL
Sbjct: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60

Query: 85  LMYRRGARSVQCSCCRTVNAASK-------------ANQMAHINCGNCRVLLMYQCGAHS 144
           LMY RGA SVQCSCCRT+NAASK             ANQMAH NCGNCRVLLMYQC AHS
Sbjct: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFELWLQTANQMAHTNCGNCRVLLMYQCEAHS 120

Query: 145 VKCTLCNFVTSVGILR 148
           VKCTLCNFVTSVGILR
Sbjct: 121 VKCTLCNFVTSVGILR 136

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BLAST of CcUC10G187770 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-46
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 0


Query: 25  MPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTL 84
           +PF P    QSQ+VCSGC+NLLMYPAGATS+CCA+C  V+ VP  G  MA+LVC GCHTL
Sbjct: 54  VPFTPPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTL 113

Query: 85  LMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG 144
           LMY RGA SVQCSCC TVN A +ANQ+AH+NCGNCR+LLMYQ GA SVKC +CNFVTSVG
Sbjct: 114 LMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG 173

[Close]

BLAST of CcUC10G187770 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.2e-44
Identity = 83/114 (72.81%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 31  TCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTLLMYRRG 90
           T  QSQ+VCSGC+NLLMYP GATS+CCA+C+ V+ VP  G  MA+LVC GCHTLLMY RG
Sbjct: 29  TSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 88

Query: 91  ARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG 145
           A SVQCSCC TVN A +ANQ+AH+NCGNC +LLMYQ GA SVKC +CNFVTSVG
Sbjct: 89  ATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of CcUC10G187770 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-34
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 34  QSQIVCSGCKNLLMYPAGATSICCALCHVV-SPVPTSGLMMARLVCSGCHTLLMYRRGAR 93
           QSQIVC GC+N+L+YP GA S+CCA+CH V S  P+ G+ +A L+C GC TLLMY R A 
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 94  SVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVGI 146
           SV+CSCC TVN     + +AH+NCG C+ +LMY  GA SVKC +CNF+T+ G+
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGM 114

[Close]

BLAST of CcUC10G187770 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-31
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 34  QSQIVCSGCKNLLMYPAGATSICCALCHVVS--PVPTSGLMMARLVCSGCHTLLMYRRGA 93
           QSQIVC GC+++L YP+GA S+CCALC  ++  P P   + MA L+C GC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 94  RSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVGI 146
            +V+CSCC TVN     N +AH++CG CR  LMY  GA SVKC +C+++T+ G+
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGM 115

[Close]

BLAST of CcUC10G187770 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.5e-29
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 34  QSQIVCSGCKNLLMYPAGATSICCALCHVVS--PVPTSGLMMARLVCSGCHTLLMYRRGA 93
           Q Q+VC GC+NLLMYP GA+++ CALC+ ++  P P     MA ++C GC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 94  RSVQCSCCRTVN---------AASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTS 146
            SV+CSCC+T N         A + ++Q+A INCG+CR  LMY  GA SVKC +C FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of CcUC10G187770 vs. ExPASy TrEMBL
Match: A0A1S3BKC0 (protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 116/132 (87.88%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 16  ERSFSNITKMPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMAR 75
           +RSF NITKMPFP VTCCQ+QI+CSGCKN+L+YPAGATSICCALCH V+PVPTSGL MAR
Sbjct: 42  KRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMAR 101

Query: 76  LVCSGCHTLLMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCT 135
           LVCSGC+TLLMY RGA SVQCSCCRT+NAASKANQMAH NCGNCRVLLMYQC AHSVKCT
Sbjct: 102 LVCSGCYTLLMYSRGATSVQCSCCRTINAASKANQMAHTNCGNCRVLLMYQCEAHSVKCT 161

Query: 136 LCNFVTSVGILR 148
           LCNFVTSVGILR
Sbjct: 162 LCNFVTSVGILR 173

[Close]

BLAST of CcUC10G187770 vs. ExPASy TrEMBL
Match: A0A1S3BJQ2 (protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.3e-55
Identity = 109/136 (80.15%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 25  MPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTL 84
           MPFP VTCCQ+QI+CSGCKN+L+YPAGATSICCALCH V+PVPTSGL MARLVCSGC+TL
Sbjct: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60

Query: 85  LMYRRGARSVQCSCCRTVNAASK-------------ANQMAHINCGNCRVLLMYQCGAHS 144
           LMY RGA SVQCSCCRT+NAASK             ANQMAH NCGNCRVLLMYQC AHS
Sbjct: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFELWLQTANQMAHTNCGNCRVLLMYQCEAHS 120

Query: 145 VKCTLCNFVTSVGILR 148
           VKCTLCNFVTSVGILR
Sbjct: 121 VKCTLCNFVTSVGILR 136

[Close]

BLAST of CcUC10G187770 vs. ExPASy TrEMBL
Match: A0A6J1CWA3 (protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.2e-52
Identity = 99/120 (82.50%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 25  MPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTL 84
           MP PPVTCCQS++VCSGCKNLL+YP GATSICC LCH VSPVPT GL MARLVC GCHTL
Sbjct: 1   MPIPPVTCCQSRMVCSGCKNLLIYPVGATSICCTLCHSVSPVPTPGLEMARLVCKGCHTL 60

Query: 85  LMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG 144
           L++ RGA SVQCSCCRTVN+ASKANQ A INC NCR+LLMYQCGAHSV+CTLCNFVT VG
Sbjct: 61  LLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTLVG 120

[Close]

BLAST of CcUC10G187770 vs. ExPASy TrEMBL
Match: A0A0E0EI65 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.0e-44
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 0


Query: 25  MPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTL 84
           +PF P    QSQ+VCSGC+NLLMYPAGATS+CCA+C  V+ VP  G  MA+LVC GCHTL
Sbjct: 13  VPFTPPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTL 72

Query: 85  LMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG 144
           LMY RGA SVQCSCC TVN A +ANQ+AH+NCGNCR+LLMYQ GA SVKC +CNFVTSVG
Sbjct: 73  LMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG 132

[Close]

BLAST of CcUC10G187770 vs. ExPASy TrEMBL
Match: A0A6G1CKU2 (Uncharacterized protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_034376 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.0e-44
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 0


Query: 25  MPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTL 84
           +PF P    QSQ+VCSGC+NLLMYPAGATS+CCA+C  V+ VP  G  MA+LVC GCHTL
Sbjct: 13  VPFTPPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTL 72

Query: 85  LMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG 144
           LMY RGA SVQCSCC TVN A +ANQ+AH+NCGNCR+LLMYQ GA SVKC +CNFVTSVG
Sbjct: 73  LMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG 132

[Close]

BLAST of CcUC10G187770 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-45
Identity = 85/124 (68.55%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 21  NITKMPFPPVTCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSG 80
           N   + F   T  QSQ+VCSGC+NLLMYP GATS+CCA+C+ V+ VP  G  MA+LVC G
Sbjct: 52  NKNNLRFVGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGG 111

Query: 81  CHTLLMYRRGARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFV 140
           CHTLLMY RGA SVQCSCC TVN A +ANQ+AH+NCGNC +LLMYQ GA SVKC +CNFV
Sbjct: 112 CHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFV 171

Query: 141 TSVG 145
           TSVG
Sbjct: 172 TSVG 175

[Close]

BLAST of CcUC10G187770 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 177.9 bits (450), Expect = 5.8e-45
Identity = 83/114 (72.81%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 31  TCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTLLMYRRG 90
           T  QSQ+VCSGC+NLLMYP GATS+CCA+C+ V+ VP  G  MA+LVC GCHTLLMY RG
Sbjct: 29  TSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 88

Query: 91  ARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG 145
           A SVQCSCC TVN A +ANQ+AH+NCGNC +LLMYQ GA SVKC +CNFVTSVG
Sbjct: 89  ATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of CcUC10G187770 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 177.9 bits (450), Expect = 5.8e-45
Identity = 83/114 (72.81%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 31  TCCQSQIVCSGCKNLLMYPAGATSICCALCHVVSPVPTSGLMMARLVCSGCHTLLMYRRG 90
           T  QSQ+VCSGC+NLLMYP GATS+CCA+C+ V+ VP  G  MA+LVC GCHTLLMY RG
Sbjct: 29  TSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 88

Query: 91  ARSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG 145
           A SVQCSCC TVN A +ANQ+AH+NCGNC +LLMYQ GA SVKC +CNFVTSVG
Sbjct: 89  ATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of CcUC10G187770 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 128.3 bits (321), Expect = 5.3e-30
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 34  QSQIVCSGCKNLLMYPAGATSICCALCHVVS--PVPTSGLMMARLVCSGCHTLLMYRRGA 93
           Q Q+VC GC+NLLMYP GA+++ CALC+ ++  P P     MA ++C GC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 94  RSVQCSCCRTVN---------AASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTS 146
            SV+CSCC+T N         A + ++Q+A INCG+CR  LMY  GA SVKC +C FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of CcUC10G187770 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 128.3 bits (321), Expect = 5.3e-30
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 34  QSQIVCSGCKNLLMYPAGATSICCALCHVVS--PVPTSGLMMARLVCSGCHTLLMYRRGA 93
           Q Q+VC GC+NLLMYP GA+++ CALC+ ++  P P     MA ++C GC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 94  RSVQCSCCRTVN---------AASKANQMAHINCGNCRVLLMYQCGAHSVKCTLCNFVTS 146
            SV+CSCC+T N         A + ++Q+A INCG+CR  LMY  GA SVKC +C FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

The following BLAST results are available for this feature:

BLAST of CcUC10G187770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650032.1	4.8e-65	89.55	hypothetical protein Csa_010851 [Cucumis sativus]	[more]
XP_008448703.1	4.9e-62	87.88	PREDICTED: protein LOL1 isoform X1 [Cucumis melo]	[more]
XP_031738784.1	4.2e-61	90.40	protein LSD1 [Cucumis sativus]	[more]
XP_038903355.1	2.4e-56	89.26	protein LSD1-like [Benincasa hispida]	[more]
XP_008448702.2	2.6e-55	80.15	PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900659.1 PREDICTED: pro...	[more]

BLAST of CcUC10G187770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J7V9	1.4e-46	72.50	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q93ZB1	8.2e-44	72.81	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q2QMB3	3.5e-34	57.52	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	2.1e-31	53.51	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	7.5e-29	51.22	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of CcUC10G187770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BKC0	2.4e-62	87.88	protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1	[more]
A0A1S3BJQ2	1.3e-55	80.15	protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1	[more]
A0A6J1CWA3	2.2e-52	82.50	protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1	[more]
A0A0E0EI65	5.0e-44	72.50	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
A0A6G1CKU2	5.0e-44	72.50	Uncharacterized protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_034...	[more]

BLAST of CcUC10G187770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.1	2.0e-45	68.55	lsd one like 1	[more]
AT1G32540.2	5.8e-45	72.81	lsd one like 1	[more]
AT1G32540.3	5.8e-45	72.81	lsd one like 1	[more]
AT4G20380.2	5.3e-30	51.22	LSD1 zinc finger family protein	[more]
AT4G20380.1	5.3e-30	51.22	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 78..102 e-value: 1.2E-11 score: 44.2 coord: 39..63 e-value: 1.1E-10 score: 41.1 coord: 116..140 e-value: 2.6E-10 score: 39.9
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 36..63 e-value: 3.3E-12 score: 43.8 coord: 113..143 e-value: 5.9E-10 score: 36.6 coord: 76..103 e-value: 5.6E-12 score: 43.1
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 25..145
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 25..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G187770.1	CcUC10G187770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0045595	regulation of cell differentiation
cellular_component	GO:0005634	nucleus