CcUC10G186530 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G186530
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	SKP1-like protein
Location	CicolChr10: 566634 .. 568571 (-)
RNA-Seq Expression	CcUC10G186530
Synteny	CcUC10G186530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCGATACAGACTTTTTCTACCACAAAAATCACAATCTTCTTTCTCTTTCGTTTTTCTCCAAATCCATGTCCTCCAAGAAGATCACTCTAAAGAGCTCCGATGGCGACTCTTTCGAAGTCGACGAGGCCGTTGCCCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAATGGCATCCCTCTTCCCAACGTCACTAGCAAGATCCTCGCCAAGGTCATCGAGTACTGCCACAAGCACGTCGACGCTTCCTCCCCCGATCACCGCCTCTCCGAAGACGACCTCAAAGCCTGGGACCGCGACTTCGTTAATGTCGACCAGGCCACTCTTTTCGATCTCATTCTGGTAAAACCTTTTCTTCCCGCCTTAGATCGATGGGCATCGATCCACTTGATTATCTAGGGTTTACCTGTTGGGTATGATATATATATATATATATATATATATATTCAAGAATCAACATTAGAGATTCTTCTGAATCTTTGATTCTGCAAACAATTGCTTTCATGTTTGTAATTGTGCTCTTAGGTGTCTGTAATGTTTGATGTTTTAGAATTGGAACGTTGGTCTTAAAGGAAAATTCTACTGGAAATTATTTAGTATTGTAGTTGTCTATTGTTGATCAATTGCTATGGGGTCTAAATAATGGTAAGTAATTCAGTATGATATGTATGGTCTTTTCCCTTTGATGAATGAAGCCGGTGATTTTGCTGAAATTGGTATTACCGGACATCTATATCTGGCGTCGTTGTCATATTTTTCTCTTTAAGAAATCGAACTTCCATTGAAAAGAAGAAATGAAAGGATACAAGAGCAACCAACAAAACAAGCTTCCAAAAAAGAGGAGTGTAAAACTAACTACAGAAAGGACACCAATCCAAAAGACCGAGACCAATATCGTAATTACACAACGGTCTAATGACCAACGTCCAAACGGAAACATTAAACCTCACCAACTCTCAAGCTTGCTTACAATAACAAAACATTCTACTCCCTGAAAAGACAGCTCAAAACCACCTTCTCCAACAAATAACAACCATCCCTATTTCGAGCTCCATGAATCCTAAAAGAACTCTTCACCGATTCCATAGGAAATTGGCGAACTGCACTCACACAACAAATGACCCAGATCCTCCTGATGCCTCATGCAAAACACCATTGCAAACCCAAGATGAAGGAGGCATAACTTCAGACATAATCCAAGTATCGACTCTCTCTCTGTCAAACTTGCCTAGCAAAAACCTTAACCTTTTCTGGAACTTTTATCTTCCTCAAAGAGGAGAAGATTAAAGCCTTTGGAGCACCCCATTAGGGGACCACCTCCCGACATCCTTTCTCCAGGATCAACAAGGAGATCCGCAGGATGCAACTTCATTGTCAAATGGTTGTAGCTTAGGTTAATGTTGATAAACTTGATTTGTTTTCCATGGTTCTACATGTCGAGAACTTTGATTTACCATATTATACATTTAAGCTGTGTTCTTGCAGTGTCTTGTTTCATTATTTCAATGGAGAGACTCGCTTCCTTTTTTTTTTTACTATTATTGTTGTTCATAGTCGTTTCTTGATTTGGCGCCATGTAAAATTCTCTCCTTCATTCTACAATGCAGGCTGCAAATTTTCTGAACATCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGACTTGTGACTTAAGGATCTTGATCAATAAGATCTGCACATGATAGTAGTATATAAGCACTTCTTTTTCGTTCTCTGTGGTATTCACATTGTTTATGAAATATTTCTGCCTGCTTGAACAATCTAACCACAATTGTGTAAACT

mRNA sequence

AATCGATACAGACTTTTTCTACCACAAAAATCACAATCTTCTTTCTCTTTCGTTTTTCTCCAAATCCATGTCCTCCAAGAAGATCACTCTAAAGAGCTCCGATGGCGACTCTTTCGAAGTCGACGAGGCCGTTGCCCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAATGGCATCCCTCTTCCCAACGTCACTAGCAAGATCCTCGCCAAGGTCATCGAGTACTGCCACAAGCACGTCGACGCTTCCTCCCCCGATCACCGCCTCTCCGAAGACGACCTCAAAGCCTGGGACCGCGACTTCGTTAATGTCGACCAGGCCACTCTTTTCGATCTCATTCTGGCTGCAAATTTTCTGAACATCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGACTTGTGACTTAAGGATCTTGATCAATAAGATCTGCACATGATAGTAGTATATAAGCACTTCTTTTTCGTTCTCTGTGGTATTCACATTGTTTATGAAATATTTCTGCCTGCTTGAACAATCTAACCACAATTGTGTAAACT

Coding sequence (CDS)

ATGTCCTCCAAGAAGATCACTCTAAAGAGCTCCGATGGCGACTCTTTCGAAGTCGACGAGGCCGTTGCCCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAATGGCATCCCTCTTCCCAACGTCACTAGCAAGATCCTCGCCAAGGTCATCGAGTACTGCCACAAGCACGTCGACGCTTCCTCCCCCGATCACCGCCTCTCCGAAGACGACCTCAAAGCCTGGGACCGCGACTTCGTTAATGTCGACCAGGCCACTCTTTTCGATCTCATTCTGGCTGCAAATTTTCTGAACATCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGA

Protein sequence

MSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

[Close]

BLAST of CcUC10G186530 vs. NCBI nr
Match: XP_022965297.1 (SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015829.1 SKP1-like protein 1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.8 bits (743), Expect = 6.9e-75
Identity = 145/153 (94.77%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           SSKKITLKSSDG+SFE+DE VALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK
Sbjct: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62

Query: 62  HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 121
           HVDASS D R+SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 63  HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 122

Query: 122 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CcUC10G186530 vs. NCBI nr
Match: XP_038903121.1 (SKP1-like protein 1A [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 146/153 (95.42%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           SSKKITLKSSDGDSFEVDEAVAL+SQTIRHMIEDDCADNGIPLPNVTS ILAKVIEYC K
Sbjct: 3   SSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSNILAKVIEYCRK 62

Query: 62  HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 121
           HVDASS D RLS+DDLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 63  HVDASSADPRLSDDDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 122

Query: 122 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CcUC10G186530 vs. NCBI nr
Match: XP_022923340.1 (SKP1-like protein 1A [Cucurbita moschata])

HSP 1 Score: 289.3 bits (739), Expect = 2.0e-74
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           SSKKITLKSSDG+SFE+DE VALESQTIRHMIEDDCADNGIPLPNVTSKIL KVIEYCHK
Sbjct: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHK 62

Query: 62  HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 121
           HVDASS D R+SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 63  HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 122

Query: 122 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CcUC10G186530 vs. NCBI nr
Match: XP_023553541.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.0 bits (733), Expect = 9.9e-74
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           SSKKITLKSSDG+SFE+DE VALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEY HK
Sbjct: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSHK 62

Query: 62  HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 121
           HVDASS D R+SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 63  HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 122

Query: 122 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CcUC10G186530 vs. NCBI nr
Match: CAB4287843.1 (unnamed protein product [Prunus armeniaca] >CAB4318214.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 284.6 bits (727), Expect = 4.9e-73
Identity = 141/153 (92.16%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           SSKKITLKSSDG+SFEV+EAVALESQTI+HMIEDDCADNGIPLPNVTSKILAKVIEYC K
Sbjct: 4   SSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCKK 63

Query: 62  HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 121
           HVDA+ PD ++SEDDLKAWD+DFV VDQATLFDLILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 64  HVDAAKPDEKISEDDLKAWDQDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 123

Query: 122 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 124 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of CcUC10G186530 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.3e-67
Identity = 127/160 (79.38%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCH 60
           MS+KKI LKSSDG+SFEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKILAKVIEYC 
Sbjct: 1   MSAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCK 60

Query: 61  KHVDASSPDHR------LSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQT 120
           +HV+A++           S+DDLKAWD DF+ +DQATLF+LILAAN+LNIK+LLDLTCQT
Sbjct: 61  RHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQT 120

Query: 121 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           VADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 VADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CcUC10G186530 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-64
Identity = 124/167 (74.25%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 4   KKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHV 63
           +KITLKSSDG++FE+DEAVALESQTI+HMIEDDC DNGIPLPNVTSKIL+KVIEYC +HV
Sbjct: 5   RKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHV 64

Query: 64  DASSPDHRL----------------SEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSL 123
           +A+                      S++DLK WD +F+ VDQ TLFDLILAAN+LNIK L
Sbjct: 65  EAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGL 124

Query: 124 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 125 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CcUC10G186530 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.3e-64
Identity = 129/166 (77.71%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 4   KKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHV 63
           K ITLKSSDG+ FEV+EAVA+ESQTIRHMIEDDCADNGIPLPNV SKIL+KVIEYC+KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 64  ------------DASSPDHRL---SEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLL 123
                       DA+S    +   S +DLK WD DFV VDQATLFDLILAAN+LNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 124 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of CcUC10G186530 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-58
Identity = 120/165 (72.73%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 6   ITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHV-- 65
           ITL+S +G  FEV EAVA+ESQTIRHMIED CAD GIPLPNV++KIL+KVIEYC KHV  
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 66  ----------DASSP----DHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLD 125
                     DA +P     ++  ED+LK +D +FV VDQ+TLFDLILAAN+LNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 126 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of CcUC10G186530 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.6e-58
Identity = 114/155 (73.55%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCH 60
           MSSK I L SSDG SFEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYC 
Sbjct: 1   MSSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCK 60

Query: 61  K-HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           K HVD ++P   +SE+DL  WD  F++++Q+T+F+LILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  KHHVDEANP---ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 121 KGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CcUC10G186530 vs. ExPASy TrEMBL
Match: A0A6J1HJY3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.3e-75
Identity = 145/153 (94.77%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           SSKKITLKSSDG+SFE+DE VALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK
Sbjct: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62

Query: 62  HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 121
           HVDASS D R+SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 63  HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 122

Query: 122 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CcUC10G186530 vs. ExPASy TrEMBL
Match: A0A6J1EBI5 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.7e-75
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           SSKKITLKSSDG+SFE+DE VALESQTIRHMIEDDCADNGIPLPNVTSKIL KVIEYCHK
Sbjct: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYCHK 62

Query: 62  HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 121
           HVDASS D R+SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 63  HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 122

Query: 122 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CcUC10G186530 vs. ExPASy TrEMBL
Match: A0A6J5VI66 (SKP1-like protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45864 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 141/153 (92.16%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           SSKKITLKSSDG+SFEV+EAVALESQTI+HMIEDDCADNGIPLPNVTSKILAKVIEYC K
Sbjct: 4   SSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCKK 63

Query: 62  HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 121
           HVDA+ PD ++SEDDLKAWD+DFV VDQATLFDLILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 64  HVDAAKPDEKISEDDLKAWDQDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 123

Query: 122 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 124 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of CcUC10G186530 vs. ExPASy TrEMBL
Match: A0A6P5SPM9 (SKP1-like protein OS=Prunus avium OX=42229 GN=LOC110758167 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.1e-73
Identity = 141/153 (92.16%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           SSKKITLKSSDG+SFEV+EAVALESQTI+HMIEDDCADNGIPLPNVTSKILAKVIEYC K
Sbjct: 4   SSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCKK 63

Query: 62  HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 121
           HVDA+ PD ++SEDDLKAWD DFV VDQATLFDLILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 64  HVDAAKPDEKISEDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 123

Query: 122 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 124 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of CcUC10G186530 vs. ExPASy TrEMBL
Match: A0A5E4E5B6 (SKP1-like protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B008750 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.3e-73
Identity = 140/153 (91.50%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           SSKKITLKSSDG+SFEV+EAVALESQTI+HMIEDDCADNGIPLPNVTSKILAKVIEYC K
Sbjct: 4   SSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCKK 63

Query: 62  HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 121
           HVDA+ PD ++S+DDLKAWD+DFV VDQATLFDLILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 64  HVDAAKPDEKISDDDLKAWDQDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 123

Query: 122 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 124 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of CcUC10G186530 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 254.2 bits (648), Expect = 6.6e-68
Identity = 127/160 (79.38%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCH 60
           MS+KKI LKSSDG+SFEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKILAKVIEYC 
Sbjct: 1   MSAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCK 60

Query: 61  KHVDASSPDHR------LSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQT 120
           +HV+A++           S+DDLKAWD DF+ +DQATLF+LILAAN+LNIK+LLDLTCQT
Sbjct: 61  RHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQT 120

Query: 121 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           VADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 VADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CcUC10G186530 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 247.3 bits (630), Expect = 8.1e-66
Identity = 124/167 (74.25%), Postives = 138/167 (82.63%), Query Frame = 0


Query: 4   KKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHV 63
           +KITLKSSDG++FE+DEAVALESQTI+HMIEDDC DNGIPLPNVTSKIL+KVIEYC +HV
Sbjct: 5   RKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHV 64

Query: 64  DASSPDHRL----------------SEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSL 123
           +A+                      S++DLK WD +F+ VDQ TLFDLILAAN+LNIK L
Sbjct: 65  EAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGL 124

Query: 124 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 125 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CcUC10G186530 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 225.3 bits (573), Expect = 3.3e-59
Identity = 114/155 (73.55%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCH 60
           MSSK I L SSDG SFEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYC 
Sbjct: 1   MSSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCK 60

Query: 61  K-HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           K HVD ++P   +SE+DL  WD  F++++Q+T+F+LILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  KHHVDEANP---ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 121 KGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CcUC10G186530 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 224.2 bits (570), Expect = 7.3e-59
Identity = 113/155 (72.90%), Postives = 132/155 (85.16%), Query Frame = 0


Query: 1   MSSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCH 60
           MSSK I L SSDG SFEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYC 
Sbjct: 1   MSSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCK 60

Query: 61  K-HVDASSPDHRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           K HVD ++P   +SE+DL  WD  F++++Q+T+F+LILAAN+LNIKSL DLTCQTVADMI
Sbjct: 61  KYHVDEANP---ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 121 KGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CcUC10G186530 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 215.3 bits (547), Expect = 3.4e-56
Identity = 108/160 (67.50%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 2   SSKKITLKSSDGDSFEVDEAVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 61
           + K I LKSSDG+SFE++EAVA++SQTI+HMIEDDCADNGIPLPNVT  ILAKVIEYC K
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 62  HVDASSPD-------HRLSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQT 121
           HV+A++              D+LK WD +FV VDQ TLFDLILAAN+LNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 122 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

The following BLAST results are available for this feature:

BLAST of CcUC10G186530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965297.1	6.9e-75	94.77	SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, part...	[more]
XP_038903121.1	1.5e-74	95.42	SKP1-like protein 1A [Benincasa hispida]	[more]
XP_022923340.1	2.0e-74	94.12	SKP1-like protein 1A [Cucurbita moschata]	[more]
XP_023553541.1	9.9e-74	94.12	SKP1-like protein 1A [Cucurbita pepo subsp. pepo]	[more]
CAB4287843.1	4.9e-73	92.16	unnamed protein product [Prunus armeniaca] >CAB4318214.1 unnamed protein product...	[more]

BLAST of CcUC10G186530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	9.3e-67	79.38	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9FHW7	1.1e-64	74.25	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q6PL11	3.3e-64	77.71	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	1.2e-58	72.73	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
O49484	4.6e-58	73.55	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]

BLAST of CcUC10G186530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJY3	3.3e-75	94.77	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1	[more]
A0A6J1EBI5	9.7e-75	94.12	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1	[more]
A0A6J5VI66	2.4e-73	92.16	SKP1-like protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45864 PE=3 SV=1	[more]
A0A6P5SPM9	4.1e-73	92.16	SKP1-like protein OS=Prunus avium OX=42229 GN=LOC110758167 PE=3 SV=1	[more]
A0A5E4E5B6	5.3e-73	91.50	SKP1-like protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B008750 PE=3 SV=1	[more]

BLAST of CcUC10G186530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	6.6e-68	79.38	S phase kinase-associated protein 1	[more]
AT5G42190.1	8.1e-66	74.25	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	3.3e-59	73.55	SKP1-like 11	[more]
AT4G34470.1	7.3e-59	72.90	SKP1-like 12	[more]
AT1G20140.1	3.4e-56	67.50	SKP1-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 3..104 e-value: 1.2E-53 score: 194.2
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..154 e-value: 1.5E-75 score: 254.8
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 4..65
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 4..63 e-value: 1.6E-30 score: 105.0
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..154 e-value: 3.3E-68 score: 226.0
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 2..154
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 105..152 e-value: 1.9E-30 score: 104.6
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 2..154
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 5..119 e-value: 5.95246E-60 score: 179.71
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 77..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G186530.1	CcUC10G186530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity