CcUC10G186210 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G186210
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	High mobility group protein
Location	CicolChr10: 332815 .. 335343 (+)
RNA-Seq Expression	CcUC10G186210
Synteny	CcUC10G186210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAAAACAAGCAGAATGATAGAAAATACAAACACGACAAGAATTCCGACGGAAAAAAGAAAATCAAGCGAAAAAGCGAACCTTCTTCAGGTGCTCCAGCCATCTAGCGAGAAACTGAAAACCGATAACGATAAAAAATATGAATGGAGCGGCAATTGAGCTTCGATGCTCTACGATTCCTTCCGCTTCCATTTCCGGAGGATTTTTCTGCCACCACTGTGAATTAATCAAACCAAAAGACTCCGTTCGGTCGTCGCAATACGACGGAGGTTATTAAGGAAGAAGTTGGGATCGGAATTCGGCTCTGAACATCAACAAATAGGCTTCAGCAGAAGGTCCCAAAATCCAAGGCCCAAAACTCAAGGCCCAGCCCAATTCGTGGAGAAACAAAACGCGGCATTTTAACTTAACAAGAGAAAATATCTTAGGAAAAGAATCCAAGTTACGAAAATACCCCGGACTTGTGAGATCAATGATTACCCCAATGACGCGTTAATCGTTTTATCACGTTTATGTGATAAGTTCCGCACTAACGAAGGGACGAGTTGAAGGAAGGGAGGGGCAAATCCGTCATTTCGTGCTCAAACAACGAGCTTTAACTCACGTGTCCGGATCTGTTTAGAGGGAACAATTCACAGCGAAGAAATTGCAAACAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGGCGAAGAGTAGCCAATGAGAAGCGAGGACATGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGAACTTTCAATTGATATCGCGATTTCTCTCTCTCTCTCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCGCTACGCTCTTCCCTTCAAAGGGCTCTCCACATAGCACTCAAAGCCAATCCCAAAACGCATCACACGGACCAAACCAAACCAAGCGAAATTTCTCCTCACATTTCACTCTCACACTCTCCTTTCTTATCTTCTTCCCAAACCCTAGAGTTTTACAGGTAAACTCCCAATATCTCCGCCGCTCGCTCGCTTGCTCTTCGTCTCTCCACCGCCTGTTGTCTTTACCTCTTTTTTTCTCCTTCGTGTATCTGCAGGATTCATCATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACTAAGTGAGTTCATCGATAACTTTTAATTTCTTTATGCGTATTTTTATCTATATGATAGTATGTTTAGGAGTAGGCAGTTGGATCGGACGCGTTCGTTTTGTAATCGTTGGTTCTGTTCTCAGTTATTTATTATGTATTTTGTTATTTGATTTTTACTAGATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCAAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGTACATATCTCTCTCTTTCTCTCTCAAACTTATCCTTTTTTTTTTTTAAATTTTTTTATCGATTTTCAGATCCGTGTAATTATGGATTTTTTACTGGTTCGATTTCTTTGTTGATGAACATAGGGAGGAGTTCAGGAAGCAGTACAAGAAGGAGCATCCTAATAACAAATCCGTCGCCGCCGTAAGTAGTTTTAGATCTGTGCACTGTTTTTCTTTTCGTGGTTCTGTTGGAGATTCTTAGGTTTTAAAAGCGTGCTCGGTTGGTCAAATGAACAGGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGTAAGTAATTACATGGAACTTGGTGTTTGCTTGCTCTGTGCTGTGGAAATTGCATAAAAGTACTCATTTGCTCGTATGTGTGCTCTATTTTTCAGGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGTAAGTTCTCTTATGTTATTTCATTTTCTATTAGTATTTCTACACATCATTATTCTCAACCGTCCTAATCATGTGCCATACTGTTAGGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCCGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGTTCGTTTACAAGTTATACCTCAAATATGTAATTCTAGCTATAAAACAAAATAATAACCTTTTGGCAATCTTTGGTTTTGAATTGCAGGAAGACGATGATGAGTAAATGTTAGGGACGAGGAATGATTTGGTGGAAGAACAAGCATTTAACTCCTTCATAGTTTGGAGCAAAAAGACTCAGCAATTTAGATTTTTCTTATGTCTCGGATAAATAGCTACTTCTTTTTCCCTTTTTTTTTTTGGGTAATTAGGATAGATGGGAGAAAAGAAATCAAAACAAAGATGGTTCAGTTTTAATTGTTAGATTTCTTAAGTTGACATGAATCTGTATTCAAGGAAAATCTGTTAGTAATTGCACAATGATTCAGTTTTAGTTGATTATTCTACTAATCTCCATGAATTTTTTCTGTTCTTCTACTTCTTGTTCTGGGAGATGGGG

mRNA sequence

TTGAAAAACAAGCAGAATGATAGAAAATACAAACACGACAAGAATTCCGACGGAAAAAAGAAAATCAAGCGAAAAAGCGAACCTTCTTCAGCGGCAATTGAGCTTCGATGCTCTACGATTCCTTCCGCTTCCATTTCCGGAGGATTTTTCTGCCACCACTGTGAATTAATCAAACCAAAAGACTCCGTTCGGTCGTCGCAATACGACGGAGAAGGTCCCAAAATCCAAGGCCCAAAACTCAAGGCCCAGCCCAATTCGTGGAGAAACAAAACGCGGCATTTTAACTTAACAAGAGAAAATATCTTAGGAAAAGAATCCAAGTTACGAAAATACCCCGGACTTGGACGAGTTGAAGGAAGGGAGGGGCAAATCCGTCATTTCGTGCTCAAACAACGAGCTTTAACTCACGTGTCCGGATCTAGGGAACAATTCACAGCGAAGAAATTGCAAACAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGGCGAAGAGTAGCCAATGAGAAGCGAGGACATGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGAACTTTCAATTGATATCGCGATTTCTCTCTCTCTCTCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCGCTACGCTCTTCCCTTCAAAGGGCTCTCCACATAGCACTCAAAGCCAATCCCAAAACGCATCACACGGACCAAACCAAACCAAGCGAAATTTCTCCTCACATTTCACTCTCACACTCTCCTTTCTTATCTTCTTCCCAAACCCTAGAGTAAACTCCCAATATCTCCGCCGCTCGCTCGCTTGCTCTTCGTCTCTCCACCGCCTGTTGATTCATCATGAAGGGCGATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCAAAGAGGCCTGCTAGTGCTTTCTTCGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCCGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGAAGACGATGATGAGTAAATGTTAGGGACGAGGAATGATTTGGTGGAAGAACAAGCATTTAACTCCTTCATAGTTTGGAGCAAAAAGACTCAGCAATTTAGATTTTTCTTATGTCTCGGATAAATAGCTACTTCTTTTTCCCTTTTTTTTTTTGGGTAATTAGGATAGATGGGAGAAAAGAAATCAAAACAAAGATGGTTCAGTTTTAATTGTTAGATTTCTTAAGTTGACATGAATCTGTATTCAAGGAAAATCTGTTAGTAATTGCACAATGATTCAGTTTTAGTTGATTATTCTACTAATCTCCATGAATTTTTTCTGTTCTTCTACTTCTTGTTCTGGGAGATGGGG

Coding sequence (CDS)

TTGAAAAACAAGCAGAATGATAGAAAATACAAACACGACAAGAATTCCGACGGAAAAAAGAAAATCAAGCGAAAAAGCGAACCTTCTTCAGCGGCAATTGAGCTTCGATGCTCTACGATTCCTTCCGCTTCCATTTCCGGAGGATTTTTCTGCCACCACTGTGAATTAATCAAACCAAAAGACTCCGTTCGGTCGTCGCAATACGACGGAGAAGGTCCCAAAATCCAAGGCCCAAAACTCAAGGCCCAGCCCAATTCGTGGAGAAACAAAACGCGGCATTTTAACTTAACAAGAGAAAATATCTTAGGAAAAGAATCCAAGTTACGAAAATACCCCGGACTTGGACGAGTTGAAGGAAGGGAGGGGCAAATCCGTCATTTCGTGCTCAAACAACGAGCTTTAACTCACGTGTCCGGATCTAGGGAACAATTCACAGCGAAGAAATTGCAAACAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGGCGAAGAGTAGCCAATGAGAAGCGAGGACATGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGAACTTTCAATTGATATCGCGATTTCTCTCTCTCTCTCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCGCTACGCTCTTCCCTTCAAAGGGCTCTCCACATAGCACTCAAAGCCAATCCCAAAACGCATCACACGGACCAAACCAAACCAAGCGAAATTTCTCCTCACATTTCACTCTCACACTCTCCTTTCTTATCTTCTTCCCAAACCCTAGAGTAAACTCCCAATATCTCCGCCGCTCGCTCGCTTGCTCTTCGTCTCTCCACCGCCTGTTGATTCATCATGAAGGGCGATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCAAAGAGGCCTGCTAGTGCTTTCTTCGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCCGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGAAGACGATGATGAGTAA

Protein sequence

LKNKQNDRKYKHDKNSDGKKKIKRKSEPSSAAIELRCSTIPSASISGGFFCHHCELIKPKDSVRSSQYDGEGPKIQGPKLKAQPNSWRNKTRHFNLTRENILGKESKLRKYPGLGRVEGREGQIRHFVLKQRALTHVSGSREQFTAKKLQTTHKGNTKERKANVKRRRVANEKRGHGSMTWQKIFEIPPKPELSIDIAISLSLSLFNETDSLHIPLATLFPSKGSPHSTQSQSQNASHGPNQTKRNFSSHFTLTLSFLIFFPNPRVNSQYLRRSLACSSSLHRLLIHHEGRLKSKSAGASKKSAKAAKDPNKPKRPASAFFEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE

Homology

[Close]

BLAST of CcUC10G186210 vs. NCBI nr
Match: XP_022145438.1 (HMG1/2-like protein [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-33
Identity = 127/256 (49.61%), Postives = 146/256 (57.03%), Query Frame = 0


Query: 179 MTWQKIFEIPPKPELSIDIAISLSLSLFNETDSLHIPLATLFPSKGSPHST--------- 238
           MTWQKIFEIPPKP L +   IS  LSL +ET+ L + L+   PSK  P +T         
Sbjct: 1   MTWQKIFEIPPKPGLQL---ISRFLSL-SETNRL-LLLSRSSPSKTFPQNTLITHTLTKP 60

Query: 239 ---QSQSQNASHGPNQTKR-NFSSHFTLTLSFLIFFPNPRVNSQYLRRSLACSSSLHRLL 298
                 + NASH PN T   + S   + TL F  F      +    +++           
Sbjct: 61  NPNPKPNANASHEPNATPHISLSLSSSQTLEFAGFVMKGGKSKAAPKKT----------- 120

Query: 299 IHHEGRLKSKSAGASKKSAKAAKDPNKPKRPASAFF------------------------ 358
              + +LKSKS GASKKSAKAAKDPNKPKRPASAFF                        
Sbjct: 121 ---DTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVG 180

Query: 359 -------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVN 385
                        EKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEEESDKSKSEVN
Sbjct: 181 KAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEEESDKSKSEVN 237

[Close]

BLAST of CcUC10G186210 vs. NCBI nr
Match: XP_038904814.1 (HMG1/2-like protein [Benincasa hispida])

HSP 1 Score: 137.9 bits (346), Expect = 1.9e-28
Identity = 93/131 (70.99%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 291 RLKSKSAGASKKSAKAAKDPNKPKRPASAFF----------------------------- 350
           +LKSKSAGASKKSAKAAKDPNKPKRPASAFF                             
Sbjct: 16  KLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 351 --------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 385
                   EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED
Sbjct: 76  KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 135

[Close]

BLAST of CcUC10G186210 vs. NCBI nr
Match: NP_001267705.1 (HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-like protein [Cucumis melo] >AAY26151.1 high mobility group protein [Cucumis sativus] >KAE8649989.1 hypothetical protein Csa_010903 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-27
Identity = 91/131 (69.47%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 291 RLKSKSAGASKKSAKAAKDPNKPKRPASAFF----------------------------- 350
           +LKSKSAGASKKSAKAAKDPNKPKRPASAFF                             
Sbjct: 16  KLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 351 --------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 385
                   EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED
Sbjct: 76  KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 135

[Close]

BLAST of CcUC10G186210 vs. NCBI nr
Match: KAG6577813.1 (hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-25
Identity = 86/131 (65.65%), Postives = 91/131 (69.47%), Query Frame = 0


Query: 291 RLKSKSAGASKKSAKAAKDPNKPKRPASAFF----------------------------- 350
           +LKSK AGASKKSAKAAKDPNKPKRPASAFF                             
Sbjct: 27  KLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 86

Query: 351 --------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 385
                   EKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEEESDKSKSEVND+DED
Sbjct: 87  KWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEEESDKSKSEVNDEDED 146

[Close]

BLAST of CcUC10G186210 vs. NCBI nr
Match: XP_022923434.1 (HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cucurbita moschata] >XP_023007627.1 HMG1/2-like protein [Cucurbita maxima] >XP_023007628.1 HMG1/2-like protein [Cucurbita maxima] >XP_023552251.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-25
Identity = 86/131 (65.65%), Postives = 91/131 (69.47%), Query Frame = 0


Query: 291 RLKSKSAGASKKSAKAAKDPNKPKRPASAFF----------------------------- 350
           +LKSK AGASKKSAKAAKDPNKPKRPASAFF                             
Sbjct: 16  KLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 351 --------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 385
                   EKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEEESDKSKSEVND+DED
Sbjct: 76  KWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEEESDKSKSEVNDEDED 135

[Close]

BLAST of CcUC10G186210 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-13
Identity = 63/127 (49.61%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 295 KSAGASKKSAKAAKDPNKPKRPASAFF--------------------------------- 354
           K A  +KK+ KA KDPNKPKRP SAFF                                 
Sbjct: 18  KQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQ 77

Query: 355 ----EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDES 385
               EKAP+I+KAEKRK EY K++QAYNK+ A G   AEEEESDKS+SEVNDDDED D S
Sbjct: 78  LTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVNDDDEDQDGS 137

[Close]

BLAST of CcUC10G186210 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-12
Identity = 61/139 (43.88%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 283 RLLIHHEGRLKSKSAGASKKSAKAAKDPNKPKRPASAFF--------------------- 342
           +L ++ +G        A K   KAAKDPNKPKRP SAFF                     
Sbjct: 16  KLAVNKKGAATKARKPAGK--GKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVS 75

Query: 343 ----------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKS 385
                           EKAPY+ K+EKRK EY K+M+AYNK+ AEG  G +EEES+KS S
Sbjct: 76  AVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVS 135

[Close]

BLAST of CcUC10G186210 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.0e-10
Identity = 59/129 (45.74%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 293 KSKSAGASKKSAKAAKDPNKPKRPASAFF------------------------------- 352
           K  + GA +  A AAKDPNKPKRPASAFF                               
Sbjct: 19  KKPAKGAGRGKA-AAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKW 78

Query: 353 ------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDD 385
                 EKAPY+ KAEKRK EY K+++AYNK++ EG    E+EESDKS SEVND+D+ +D
Sbjct: 79  KSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDEESDKSVSEVNDEDDAED 138

[Close]

BLAST of CcUC10G186210 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-09
Identity = 59/133 (44.36%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 293 KSKSAGASKKSAK----AAKDPNKPKRPASAFF--------------------------- 352
           +S     +KK AK    AAKDPNKPKRP+SAFF                           
Sbjct: 11  RSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAG 70

Query: 353 ----------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDD 385
                     EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+EESDKS SEVND+D
Sbjct: 71  GEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDEESDKSVSEVNDED 130

[Close]

BLAST of CcUC10G186210 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.1e-07
Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 0


Query: 283 RLLIHHEGRLKSKSAGASKKSAKAAKDPNKPKRPASAFF--------------------- 342
           +L ++ +G   +K  G      K  KDPNKPKRP SAFF                     
Sbjct: 16  KLAVNKKGAAATK-GGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVA 75

Query: 343 ----------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKS 384
                           EKAPY+++A K+K EY  ++QAYNK++ EG +  +EE SDKSKS
Sbjct: 76  AVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EGKD--DEEGSDKSKS 135

[Close]

BLAST of CcUC10G186210 vs. ExPASy TrEMBL
Match: A0A6J1CVX4 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-33
Identity = 127/256 (49.61%), Postives = 146/256 (57.03%), Query Frame = 0


Query: 179 MTWQKIFEIPPKPELSIDIAISLSLSLFNETDSLHIPLATLFPSKGSPHST--------- 238
           MTWQKIFEIPPKP L +   IS  LSL +ET+ L + L+   PSK  P +T         
Sbjct: 1   MTWQKIFEIPPKPGLQL---ISRFLSL-SETNRL-LLLSRSSPSKTFPQNTLITHTLTKP 60

Query: 239 ---QSQSQNASHGPNQTKR-NFSSHFTLTLSFLIFFPNPRVNSQYLRRSLACSSSLHRLL 298
                 + NASH PN T   + S   + TL F  F      +    +++           
Sbjct: 61  NPNPKPNANASHEPNATPHISLSLSSSQTLEFAGFVMKGGKSKAAPKKT----------- 120

Query: 299 IHHEGRLKSKSAGASKKSAKAAKDPNKPKRPASAFF------------------------ 358
              + +LKSKS GASKKSAKAAKDPNKPKRPASAFF                        
Sbjct: 121 ---DTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVG 180

Query: 359 -------------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVN 385
                        EKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEEESDKSKSEVN
Sbjct: 181 KAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEEESDKSKSEVN 237

[Close]

BLAST of CcUC10G186210 vs. ExPASy TrEMBL
Match: A0A0A0L1J4 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002290 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-29
Identity = 91/116 (78.45%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 291 RLKSKSAGASKKSAKAAKDPNKPKRPASAFF----------------------EKAPYIN 350
           +LKSKSAGASKKSAKAAKDPNKPKRPASAFF                      EKAPYIN
Sbjct: 16  KLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAEKAPYIN 75

Query: 351 KAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 385
           KAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGE++DDE
Sbjct: 76  KAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEDEDDE 131

[Close]

BLAST of CcUC10G186210 vs. ExPASy TrEMBL
Match: Q4ZH67 (High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-28
Identity = 91/131 (69.47%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 291 RLKSKSAGASKKSAKAAKDPNKPKRPASAFF----------------------------- 350
           +LKSKSAGASKKSAKAAKDPNKPKRPASAFF                             
Sbjct: 16  KLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 351 --------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 385
                   EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED
Sbjct: 76  KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 135

[Close]

BLAST of CcUC10G186210 vs. ExPASy TrEMBL
Match: A0A1S3BJR7 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-28
Identity = 91/131 (69.47%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 291 RLKSKSAGASKKSAKAAKDPNKPKRPASAFF----------------------------- 350
           +LKSKSAGASKKSAKAAKDPNKPKRPASAFF                             
Sbjct: 16  KLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 351 --------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 385
                   EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED
Sbjct: 76  KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 135

[Close]

BLAST of CcUC10G186210 vs. ExPASy TrEMBL
Match: A0A6J1KZ83 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-25
Identity = 86/131 (65.65%), Postives = 91/131 (69.47%), Query Frame = 0


Query: 291 RLKSKSAGASKKSAKAAKDPNKPKRPASAFF----------------------------- 350
           +LKSK AGASKKSAKAAKDPNKPKRPASAFF                             
Sbjct: 16  KLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 351 --------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 385
                   EKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEEESDKSKSEVND+DED
Sbjct: 76  KWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEEESDKSKSEVNDEDED 135

[Close]

BLAST of CcUC10G186210 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-11
Identity = 60/128 (46.88%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 293 KSKSAGASKKSAKAAKDPNKPKRPASAFF------------------------------- 352
           K  + GA +  A AAKDPNKPKRPASAFF                               
Sbjct: 19  KKPAKGAGRGKA-AAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKW 78

Query: 353 ------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDD 384
                 EKAPY+ KAEKRK EY K+++AYNK++ EG    E+EESDKS SEVND+D+ +D
Sbjct: 79  KSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDEESDKSVSEVNDEDDAED 138

[Close]

BLAST of CcUC10G186210 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 66.2 bits (160), Expect = 6.4e-11
Identity = 59/129 (45.74%), Postives = 73/129 (56.59%), Query Frame = 0


Query: 293 KSKSAGASKKSAKAAKDPNKPKRPASAFF------------------------------- 352
           K  + GA +  A AAKDPNKPKRPASAFF                               
Sbjct: 19  KKPAKGAGRGKA-AAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKW 78

Query: 353 ------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDD 385
                 EKAPY+ KAEKRK EY K+++AYNK++ EG    E+EESDKS SEVND+D+ +D
Sbjct: 79  KSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDEESDKSVSEVNDEDDAED 138

[Close]

BLAST of CcUC10G186210 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 65.9 bits (159), Expect = 8.3e-11
Identity = 59/133 (44.36%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 293 KSKSAGASKKSAK----AAKDPNKPKRPASAFF--------------------------- 352
           +S     +KK AK    AAKDPNKPKRP+SAFF                           
Sbjct: 11  RSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAG 70

Query: 353 ----------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDD 385
                     EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+EESDKS SEVND+D
Sbjct: 71  GEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDEESDKSVSEVNDED 130

[Close]

BLAST of CcUC10G186210 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 65.9 bits (159), Expect = 8.3e-11
Identity = 58/127 (45.67%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 293 KSKSAGASKKSAKAAKDPNKPKRPASAFF------------------------------- 352
           K  + GA +  A AAKDPNKPKRPASAFF                               
Sbjct: 19  KKPAKGAGRGKA-AAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKW 78

Query: 353 ------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDD 383
                 EKAPY+ KAEKRK EY K+++AYNK++ EG    E+EESDKS SEVND+D+ +D
Sbjct: 79  KSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDEESDKSVSEVNDEDDAED 138

[Close]

BLAST of CcUC10G186210 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-10
Identity = 56/128 (43.75%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 293 KSKSAGASKKSAK----AAKDPNKPKRPASAFF--------------------------- 352
           +S     +KK AK    AAKDPNKPKRP+SAFF                           
Sbjct: 11  RSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAG 70

Query: 353 ----------EKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDD 380
                     EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+EESDKS SEVND+D
Sbjct: 71  GEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDEESDKSVSEVNDED 130

The following BLAST results are available for this feature:

BLAST of CcUC10G186210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145438.1	3.3e-33	49.61	HMG1/2-like protein [Momordica charantia]	[more]
XP_038904814.1	1.9e-28	70.99	HMG1/2-like protein [Benincasa hispida]	[more]
NP_001267705.1	1.2e-27	69.47	HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-lik...	[more]
KAG6577813.1	3.3e-25	65.65	hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923434.1	3.3e-25	65.65	HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cu...	[more]

BLAST of CcUC10G186210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40619	1.7e-13	49.61	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P26585	1.5e-12	43.88	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
O49596	9.0e-10	45.74	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P93047	1.2e-09	44.36	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40620	7.1e-07	39.13	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of CcUC10G186210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVX4	1.6e-33	49.61	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1	[more]
A0A0A0L1J4	1.1e-29	78.45	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002290 PE=...	[more]
Q4ZH67	5.8e-28	69.47	High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]
A0A1S3BJR7	5.8e-28	69.47	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=3 SV=1	[more]
A0A6J1KZ83	1.6e-25	65.65	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1	[more]

BLAST of CcUC10G186210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20693.3	2.2e-11	46.88	high mobility group B2	[more]
AT1G20693.1	6.4e-11	45.74	high mobility group B2	[more]
AT1G20696.1	8.3e-11	44.36	high mobility group B3	[more]
AT1G20693.2	8.3e-11	45.67	high mobility group B2	[more]
AT1G20696.3	3.2e-10	43.75	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 327..347
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..340
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 363..384
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 292..384
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..85
None	No IPR available	PANTHER	PTHR46261:SF18	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 289..321 coord: 322..382
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 289..321 coord: 322..382
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 299..350

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G186210.1	CcUC10G186210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding